Wall clock time and date at job start Wed Apr 1 2020 05:12:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52998 * 109.47448 * 2 1 4 4 C 1.53003 * 109.47025 * 240.00059 * 2 1 3 5 5 N 1.46494 * 109.47231 * 120.00493 * 2 1 3 6 6 S 1.65606 * 120.00291 * 65.71896 * 5 2 1 7 7 O 1.42108 * 104.27149 * 332.44314 * 6 5 2 8 8 O 1.42100 * 104.27556 * 204.58986 * 6 5 2 9 9 C 1.81395 * 104.45098 * 88.51635 * 6 5 2 10 10 C 1.52997 * 112.85082 * 32.65357 * 9 6 5 11 11 N 1.46502 * 109.46971 * 49.38288 * 10 9 6 12 12 C 1.34781 * 119.99754 * 185.45282 * 11 10 9 13 13 O 1.21588 * 119.99929 * 354.90252 * 12 11 10 14 14 N 1.34770 * 119.99948 * 174.90439 * 12 11 10 15 15 C 1.46499 * 120.00370 * 185.08260 * 14 12 11 16 16 C 1.50696 * 109.47391 * 179.97438 * 15 14 12 17 17 H 1.08002 * 120.00063 * 0.02562 * 16 15 14 18 18 C 1.37879 * 120.00033 * 179.97438 * 16 15 14 19 19 N 1.31514 * 120.00008 * 180.02562 * 18 16 15 20 20 Si 1.86796 * 120.00000 * 0.02562 * 18 16 15 21 21 H 1.48503 * 109.47435 * 89.99700 * 20 18 16 22 22 H 1.48495 * 109.47505 * 209.99794 * 20 18 16 23 23 H 1.48509 * 109.47152 * 329.99637 * 20 18 16 24 24 C 1.53778 * 113.61545 * 163.85239 * 9 6 5 25 25 C 1.54049 * 86.98904 * 140.01717 * 24 9 6 26 26 C 1.53783 * 113.61301 * 261.45951 * 9 6 5 27 27 H 1.08996 * 109.46955 * 299.99942 * 1 2 3 28 28 H 1.09003 * 109.46921 * 59.99457 * 1 2 3 29 29 H 1.08996 * 109.47534 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47398 * 184.85233 * 3 2 1 31 31 H 1.08996 * 109.47575 * 304.85503 * 3 2 1 32 32 H 1.09006 * 109.46943 * 64.85894 * 3 2 1 33 33 H 1.08999 * 109.47250 * 309.47222 * 4 2 1 34 34 H 1.09004 * 109.46823 * 69.47577 * 4 2 1 35 35 H 1.09005 * 109.47485 * 189.46558 * 4 2 1 36 36 H 0.97003 * 120.00405 * 245.71457 * 5 2 1 37 37 H 1.09002 * 109.47308 * 169.38346 * 10 9 6 38 38 H 1.08999 * 109.47007 * 289.38562 * 10 9 6 39 39 H 0.97001 * 119.99943 * 5.45382 * 11 10 9 40 40 H 0.97007 * 119.99922 * 5.08302 * 14 12 11 41 41 H 1.08996 * 109.47120 * 300.00524 * 15 14 12 42 42 H 1.09009 * 109.46819 * 60.00086 * 15 14 12 43 43 H 0.97000 * 120.00149 * 180.02562 * 19 18 16 44 44 H 1.09003 * 113.61699 * 254.61486 * 24 9 6 45 45 H 1.09005 * 113.61316 * 25.51351 * 24 9 6 46 46 H 1.09002 * 113.62017 * 220.02388 * 25 24 9 47 47 H 1.08999 * 113.69065 * 89.12237 * 25 24 9 48 48 H 1.09003 * 113.61590 * 334.48114 * 26 9 6 49 49 H 1.09000 * 113.61883 * 105.29877 * 26 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 7 2.0183 -0.6907 1.1960 6 16 1.7383 -2.3115 1.3887 7 8 0.5423 -2.5496 0.6590 8 8 1.7908 -2.5115 2.7945 9 6 3.1489 -3.1140 0.5783 10 6 4.4399 -2.3006 0.6903 11 7 4.6463 -1.9016 2.0848 12 6 5.6661 -1.0815 2.4072 13 8 6.4692 -0.7472 1.5577 14 7 5.7957 -0.6321 3.6711 15 6 6.8364 0.3459 3.9978 16 6 6.7679 0.6812 5.4654 17 1 6.0238 0.2123 6.0922 18 6 7.6557 1.5857 6.0081 19 7 7.5962 1.8779 7.2890 20 14 8.9432 2.3960 4.9241 21 1 8.3928 3.6535 4.3574 22 1 10.1492 2.7043 5.7337 23 1 9.3111 1.4745 3.8191 24 6 3.3182 -4.5940 0.9597 25 6 3.6708 -4.8504 -0.5178 26 6 2.8463 -3.5956 -0.8504 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1265 1.4437 -0.0869 31 1 1.6075 1.9808 -0.8432 32 1 1.7495 1.9305 0.9304 33 1 1.5451 -1.6884 -1.3379 34 1 1.8213 -0.1190 -2.1311 35 1 3.1168 -0.8700 -1.1689 36 1 2.5057 -0.1987 1.8753 37 1 5.2819 -2.9078 0.3577 38 1 4.3642 -1.4109 0.0652 39 1 4.0489 -2.2277 2.7760 40 1 5.1998 -0.9562 4.3646 41 1 7.8152 -0.0740 3.7659 42 1 6.6812 1.2513 3.4110 43 1 8.2206 2.5145 7.6707 44 1 4.1456 -4.7764 1.6456 45 1 2.3912 -5.0720 1.2767 46 1 3.2440 -5.7713 -0.9152 47 1 4.7330 -4.7461 -0.7390 48 1 1.7906 -3.8011 -1.0275 49 1 3.2917 -2.9715 -1.6252 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001681910605.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:12:55 Heat of formation + Delta-G solvation = -107.497474 kcal Electronic energy + Delta-G solvation = -31169.486983 eV Core-core repulsion = 27065.589620 eV Total energy + Delta-G solvation = -4103.897363 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.26500 -40.08512 -39.07893 -38.05150 -37.09907 -36.23676 -35.38465 -34.35646 -31.88561 -30.41509 -28.93719 -28.27290 -28.06826 -26.64209 -25.34072 -23.92473 -22.00156 -21.59760 -20.83475 -20.22834 -19.45046 -18.82246 -18.29454 -18.22897 -17.32172 -17.03854 -16.68305 -16.35285 -16.22785 -15.93402 -15.47139 -15.18776 -15.06696 -14.87269 -14.64577 -14.43807 -14.35466 -14.15715 -13.94527 -13.75303 -13.36167 -13.25373 -13.11469 -13.03562 -13.01048 -12.98019 -12.84982 -12.67094 -12.55829 -12.31713 -12.26696 -11.90842 -11.67241 -11.62270 -11.56934 -11.37708 -11.33855 -11.11028 -10.90045 -10.39519 -10.31402 -9.73074 -8.37649 -6.45018 -0.80300 1.35417 1.37095 1.50379 1.63843 1.70355 2.14992 2.30478 2.69400 2.77456 2.97954 3.12100 3.34439 3.45387 3.48154 3.73605 3.79252 3.99735 4.07073 4.25681 4.36964 4.41481 4.56713 4.60115 4.73382 4.74440 4.76287 4.79978 4.87281 4.92421 4.96543 5.01216 5.05843 5.07751 5.09292 5.20676 5.25816 5.28113 5.33551 5.35602 5.45907 5.53550 5.61007 5.86663 6.02306 6.22217 6.57362 7.08607 7.20701 7.58894 8.77367 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.013898 B = 0.003374 C = 0.003138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2014.181169 B = 8296.547344 C = 8921.739142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.175 3.825 3 C -0.150 4.150 4 C -0.195 4.195 5 N -1.109 6.109 6 S 2.614 3.386 7 O -0.961 6.961 8 O -0.994 6.994 9 C -0.595 4.595 10 C 0.182 3.818 11 N -0.754 5.754 12 C 0.704 3.296 13 O -0.629 6.629 14 N -0.724 5.724 15 C 0.252 3.748 16 C -0.548 4.548 17 H 0.055 0.945 18 C 0.026 3.974 19 N -0.933 5.933 20 Si 0.941 3.059 21 H -0.263 1.263 22 H -0.275 1.275 23 H -0.258 1.258 24 C -0.117 4.117 25 C -0.118 4.118 26 C -0.099 4.099 27 H 0.048 0.952 28 H 0.083 0.917 29 H 0.087 0.913 30 H 0.057 0.943 31 H 0.089 0.911 32 H 0.054 0.946 33 H 0.076 0.924 34 H 0.096 0.904 35 H 0.073 0.927 36 H 0.415 0.585 37 H 0.087 0.913 38 H 0.092 0.908 39 H 0.403 0.597 40 H 0.403 0.597 41 H 0.013 0.987 42 H 0.016 0.984 43 H 0.272 0.728 44 H 0.088 0.912 45 H 0.098 0.902 46 H 0.096 0.904 47 H 0.094 0.906 48 H 0.114 0.886 49 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.079 -10.883 -22.333 28.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C 0.087 3.913 3 C -0.209 4.209 4 C -0.253 4.253 5 N -0.867 5.867 6 S 2.710 3.290 7 O -0.951 6.951 8 O -0.984 6.984 9 C -0.688 4.688 10 C 0.057 3.943 11 N -0.414 5.414 12 C 0.404 3.596 13 O -0.511 6.511 14 N -0.377 5.377 15 C 0.128 3.872 16 C -0.586 4.586 17 H 0.073 0.927 18 C -0.174 4.174 19 N -0.572 5.572 20 Si 0.765 3.235 21 H -0.188 1.188 22 H -0.200 1.200 23 H -0.182 1.182 24 C -0.156 4.156 25 C -0.157 4.157 26 C -0.137 4.137 27 H 0.067 0.933 28 H 0.102 0.898 29 H 0.105 0.895 30 H 0.076 0.924 31 H 0.108 0.892 32 H 0.073 0.927 33 H 0.095 0.905 34 H 0.115 0.885 35 H 0.092 0.908 36 H 0.249 0.751 37 H 0.105 0.895 38 H 0.110 0.890 39 H 0.240 0.760 40 H 0.237 0.763 41 H 0.031 0.969 42 H 0.033 0.967 43 H 0.081 0.919 44 H 0.107 0.893 45 H 0.116 0.884 46 H 0.114 0.886 47 H 0.113 0.887 48 H 0.133 0.867 49 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -14.152 -10.889 -22.636 28.831 hybrid contribution 0.864 0.641 1.232 1.636 sum -13.288 -10.248 -21.403 27.197 Atomic orbital electron populations 1.22761 0.94354 1.04976 1.02697 1.20250 0.93896 0.93513 0.83593 1.22077 1.01606 0.93935 1.03262 1.22859 1.02274 1.02472 0.97684 1.55647 1.72622 1.26822 1.31579 1.04896 0.76487 0.73764 0.73809 1.93486 1.42295 1.84913 1.74398 1.93547 1.88019 1.85401 1.31455 1.31869 1.14755 1.08340 1.13822 1.20764 0.93754 0.98440 0.81311 1.45351 1.32805 1.52545 1.10736 1.15978 0.81626 0.79169 0.82861 1.90849 1.45457 1.64884 1.49882 1.45215 1.37745 1.46492 1.08268 1.18980 0.86733 0.87191 0.94314 1.21297 1.18155 1.26135 0.92985 0.92711 1.25618 0.99178 0.96472 0.96180 1.69995 1.38763 1.35076 1.13372 0.85805 0.78875 0.79677 0.79192 1.18787 1.20047 1.18178 1.22904 1.04106 0.87867 1.00707 1.22842 1.01330 0.98479 0.93010 1.22972 1.03171 0.97991 0.89575 0.93317 0.89784 0.89479 0.92363 0.89223 0.92669 0.90481 0.88505 0.90802 0.75118 0.89516 0.88975 0.76045 0.76271 0.96898 0.96651 0.91883 0.89310 0.88369 0.88565 0.88717 0.86746 0.87373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.37 8.42 71.98 0.61 -2.77 16 2 C 0.17 2.98 1.06 3.60 0.00 2.99 16 3 C -0.15 -2.47 8.58 71.98 0.62 -1.85 16 4 C -0.19 -2.45 6.57 71.98 0.47 -1.98 16 5 N -1.11 -22.74 4.48 -152.23 -0.68 -23.43 16 6 S 2.61 56.02 4.30 -56.49 -0.24 55.78 16 7 O -0.96 -22.11 12.23 -127.65 -1.56 -23.67 16 8 O -0.99 -28.60 16.60 -127.65 -2.12 -30.72 16 9 C -0.59 -9.32 0.59 -10.27 -0.01 -9.33 16 10 C 0.18 3.65 4.41 86.38 0.38 4.03 16 11 N -0.75 -20.21 4.99 -478.53 -2.39 -22.60 16 12 C 0.70 26.02 8.55 179.06 1.53 27.55 16 13 O -0.63 -27.29 16.36 -3.99 -0.07 -27.35 16 14 N -0.72 -29.49 5.55 -482.30 -2.68 -32.17 16 15 C 0.25 12.33 4.50 85.63 0.39 12.71 16 16 C -0.55 -30.50 9.83 25.60 0.25 -30.25 16 17 H 0.05 3.25 7.84 -2.91 -0.02 3.23 16 18 C 0.03 1.45 5.47 84.66 0.46 1.91 16 19 N -0.93 -56.15 13.96 21.45 0.30 -55.85 16 20 Si 0.94 43.79 27.47 68.60 1.88 45.67 16 21 H -0.26 -11.74 7.11 99.48 0.71 -11.04 16 22 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 23 H -0.26 -11.81 6.54 99.48 0.65 -11.16 16 24 C -0.12 -1.56 7.25 31.21 0.23 -1.34 16 25 C -0.12 -1.07 7.74 31.21 0.24 -0.83 16 26 C -0.10 -0.98 4.78 31.12 0.15 -0.83 16 27 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.09 1.82 5.12 -2.39 -0.01 1.81 16 30 H 0.06 1.05 8.14 -2.39 -0.02 1.04 16 31 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.05 1.00 8.14 -2.38 -0.02 0.98 16 33 H 0.08 0.91 4.71 -2.39 -0.01 0.90 16 34 H 0.10 0.87 8.12 -2.39 -0.02 0.85 16 35 H 0.07 0.88 5.21 -2.38 -0.01 0.87 16 36 H 0.41 9.24 8.59 -96.74 -0.83 8.41 16 37 H 0.09 1.72 7.34 -2.39 -0.02 1.70 16 38 H 0.09 1.80 5.99 -2.39 -0.01 1.79 16 39 H 0.40 10.33 6.57 -92.71 -0.61 9.72 16 40 H 0.40 15.11 8.34 -92.70 -0.77 14.34 16 41 H 0.01 0.67 7.20 -2.39 -0.02 0.65 16 42 H 0.02 0.77 7.57 -2.38 -0.02 0.75 16 43 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 44 H 0.09 1.29 8.10 -2.39 -0.02 1.27 16 45 H 0.10 1.15 8.10 -2.38 -0.02 1.14 16 46 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 47 H 0.09 0.84 7.65 -2.39 -0.02 0.82 16 48 H 0.11 1.04 7.02 -2.39 -0.02 1.03 16 49 H 0.11 0.76 6.93 -2.39 -0.02 0.74 16 Total: -1.00 -74.53 382.01 -3.50 -78.03 By element: Atomic # 1 Polarization: 37.56 SS G_CDS: -1.27 Total: 36.29 kcal Atomic # 6 Polarization: -5.30 SS G_CDS: 5.32 Total: 0.02 kcal Atomic # 7 Polarization: -128.59 SS G_CDS: -5.45 Total: -134.04 kcal Atomic # 8 Polarization: -78.00 SS G_CDS: -3.75 Total: -81.75 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 1.88 Total: 45.67 kcal Atomic # 16 Polarization: 56.02 SS G_CDS: -0.24 Total: 55.78 kcal Total: -74.53 -3.50 -78.03 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001681910605.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.465 kcal (2) G-P(sol) polarization free energy of solvation -74.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds