Wall clock time and date at job start Wed Apr 1 2020 04:31:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34639 * 117.00077 * 2 1 4 4 O 1.21511 * 119.99841 * 359.97438 * 3 2 1 5 5 N 1.34771 * 119.99969 * 180.02562 * 3 2 1 6 6 C 1.46505 * 119.99887 * 179.97438 * 5 3 2 7 7 C 1.50706 * 109.47186 * 179.97438 * 6 5 3 8 8 O 1.21281 * 119.99498 * 359.97438 * 7 6 5 9 9 N 1.34767 * 119.99974 * 180.02562 * 7 6 5 10 10 C 1.46500 * 119.99977 * 179.97438 * 9 7 6 11 11 H 1.09001 * 110.64301 * 36.68713 * 10 9 7 12 12 C 1.54323 * 110.72001 * 273.54250 * 10 9 7 13 13 N 1.47022 * 107.27361 * 219.26559 * 12 10 9 14 14 C 1.36935 * 125.65039 * 178.92481 * 13 12 10 15 15 H 1.08001 * 120.00219 * 174.91121 * 14 13 12 16 16 C 1.38815 * 119.99846 * 354.90979 * 14 13 12 17 17 N 1.31618 * 120.00164 * 7.07687 * 16 14 13 18 18 Si 1.86803 * 119.99935 * 187.07675 * 16 14 13 19 19 H 1.48502 * 109.47269 * 94.98750 * 18 16 14 20 20 H 1.48499 * 109.46983 * 214.98843 * 18 16 14 21 21 H 1.48499 * 109.46913 * 334.98588 * 18 16 14 22 22 C 1.47423 * 108.70348 * 358.94320 * 13 12 10 23 23 C 1.54913 * 104.92567 * 24.07046 * 22 13 12 24 24 H 1.08997 * 111.00040 * 81.12312 * 23 22 13 25 25 C 1.50704 * 111.00406 * 204.96780 * 23 22 13 26 26 C 1.38237 * 119.99620 * 58.28135 * 25 23 22 27 27 C 1.38239 * 120.00001 * 179.78693 * 26 25 23 28 28 C 1.38232 * 119.99649 * 0.46136 * 27 26 25 29 29 C 1.38240 * 120.00365 * 359.76453 * 28 27 26 30 30 C 1.38231 * 119.99635 * 0.03008 * 29 28 27 31 31 H 1.09006 * 109.47115 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47255 * 300.00403 * 1 2 3 33 33 H 1.08997 * 109.47147 * 60.00386 * 1 2 3 34 34 H 0.97006 * 120.00404 * 359.97438 * 5 3 2 35 35 H 1.08995 * 109.47363 * 59.99578 * 6 5 3 36 36 H 1.08996 * 109.46921 * 299.99682 * 6 5 3 37 37 H 0.97004 * 120.00572 * 359.97438 * 9 7 6 38 38 H 1.09001 * 109.88071 * 99.85154 * 12 10 9 39 39 H 1.08993 * 110.01330 * 338.75800 * 12 10 9 40 40 H 0.96996 * 120.00070 * 179.97438 * 17 16 14 41 41 H 1.08995 * 110.36945 * 142.96355 * 22 13 12 42 42 H 1.09005 * 110.36872 * 265.18035 * 22 13 12 43 43 H 1.08006 * 120.00014 * 359.97438 * 26 25 23 44 44 H 1.08000 * 120.00037 * 180.24638 * 27 26 25 45 45 H 1.08005 * 119.99959 * 179.79157 * 28 27 26 46 46 H 1.07996 * 119.99795 * 180.02562 * 29 28 27 47 47 H 1.08000 * 120.00220 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1996 0.0000 4 8 1.4014 2.2187 -0.0005 5 7 3.4091 1.2701 -0.0005 6 6 4.0742 2.5755 -0.0011 7 6 5.5683 2.3781 -0.0010 8 8 6.0318 1.2573 0.0000 9 7 6.3892 3.4468 -0.0009 10 6 7.8416 3.2549 -0.0002 11 1 8.1157 2.3935 -0.6093 12 6 8.3706 3.0954 1.4407 13 7 9.6475 3.8197 1.5197 14 6 10.4294 3.9394 2.6375 15 1 11.3926 4.4238 2.5735 16 6 9.9841 3.4381 3.8529 17 7 8.8778 2.7269 3.9059 18 14 10.9548 3.7728 5.4134 19 1 10.3919 4.9626 6.1010 20 1 10.8681 2.5942 6.3127 21 1 12.3762 4.0275 5.0670 22 6 9.9466 4.3963 0.1963 23 6 8.5696 4.5320 -0.5003 24 1 8.0510 5.4316 -0.1686 25 6 8.7191 4.5193 -1.9998 26 6 9.3118 3.4388 -2.6261 27 6 9.4451 3.4251 -4.0020 28 6 8.9943 4.4961 -4.7507 29 6 8.4058 5.5787 -4.1240 30 6 8.2687 5.5905 -2.7485 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 3.9375 0.4566 -0.0005 35 1 3.7817 3.1328 0.8888 36 1 3.7811 3.1322 -0.8911 37 1 6.0185 4.3433 -0.0013 38 1 8.5288 2.0400 1.6628 39 1 7.6590 3.5203 2.1485 40 1 8.5668 2.3763 4.7551 41 1 10.4145 5.3747 0.3056 42 1 10.5945 3.7281 -0.3711 43 1 9.6680 2.6040 -2.0407 44 1 9.9045 2.5792 -4.4916 45 1 9.1014 4.4870 -5.8253 46 1 8.0532 6.4152 -4.7090 47 1 7.8094 6.4364 -2.2588 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691191798.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:16 Heat of formation + Delta-G solvation = -81.307208 kcal Electronic energy + Delta-G solvation = -30386.821506 eV Core-core repulsion = 26148.615886 eV Total energy + Delta-G solvation = -4238.205620 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.71733 -41.16696 -40.19826 -38.68613 -37.69421 -35.84111 -35.55742 -34.32737 -32.57000 -31.71546 -30.67330 -29.28947 -28.60376 -27.62761 -26.26212 -23.83138 -23.15984 -22.76943 -22.18200 -21.43219 -21.12588 -20.15035 -18.94910 -18.18991 -17.99303 -17.73787 -17.59087 -17.20290 -16.83168 -16.40468 -16.19464 -15.95911 -15.52147 -15.37911 -15.08933 -14.80303 -14.69180 -14.33462 -14.18782 -14.06454 -13.90694 -13.86766 -13.61875 -13.53320 -13.02571 -12.95457 -12.77517 -12.65448 -12.51889 -12.09587 -12.00083 -11.88703 -11.87699 -11.80920 -11.63516 -11.50824 -11.12953 -10.73584 -10.46600 -10.15011 -9.73210 -9.49751 -8.93099 -7.86502 -5.23150 0.50163 0.58681 1.00406 1.45621 1.47129 1.47401 1.56391 1.63900 2.11707 2.48700 2.91493 3.22940 3.31520 3.45933 3.64869 3.74781 3.95790 4.00259 4.22174 4.23285 4.25715 4.28295 4.31655 4.36059 4.36697 4.39107 4.54786 4.58272 4.69410 4.73399 4.82654 4.93665 4.96371 5.14337 5.17807 5.22636 5.28709 5.31007 5.43583 5.58560 5.66096 5.70111 5.72809 5.84312 6.15085 6.20329 6.21928 6.45175 7.04982 7.13838 7.15709 7.73735 8.37079 9.22685 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.006488 B = 0.003645 C = 0.002462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4314.820036 B = 7679.393734 C =11371.929396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 O -0.377 6.377 3 C 0.652 3.348 4 O -0.599 6.599 5 N -0.697 5.697 6 C 0.128 3.872 7 C 0.510 3.490 8 O -0.573 6.573 9 N -0.694 5.694 10 C 0.147 3.853 11 H 0.076 0.924 12 C 0.187 3.813 13 N -0.624 5.624 14 C -0.242 4.242 15 H 0.086 0.914 16 C -0.064 4.064 17 N -0.948 5.948 18 Si 0.977 3.023 19 H -0.284 1.284 20 H -0.299 1.299 21 H -0.267 1.267 22 C 0.142 3.858 23 C -0.049 4.049 24 H 0.106 0.894 25 C -0.074 4.074 26 C -0.131 4.131 27 C -0.127 4.127 28 C -0.128 4.128 29 C -0.120 4.120 30 C -0.116 4.116 31 H 0.135 0.865 32 H 0.062 0.938 33 H 0.066 0.934 34 H 0.418 0.582 35 H 0.115 0.885 36 H 0.129 0.871 37 H 0.418 0.582 38 H -0.007 1.007 39 H 0.025 0.975 40 H 0.245 0.755 41 H 0.055 0.945 42 H 0.024 0.976 43 H 0.103 0.897 44 H 0.132 0.868 45 H 0.144 0.856 46 H 0.148 0.852 47 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.285 3.250 -16.957 20.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 O -0.290 6.290 3 C 0.405 3.595 4 O -0.490 6.490 5 N -0.358 5.358 6 C 0.002 3.998 7 C 0.296 3.704 8 O -0.452 6.452 9 N -0.345 5.345 10 C 0.041 3.959 11 H 0.094 0.906 12 C 0.061 3.939 13 N -0.350 5.350 14 C -0.371 4.371 15 H 0.104 0.896 16 C -0.257 4.257 17 N -0.597 5.597 18 Si 0.805 3.195 19 H -0.211 1.211 20 H -0.226 1.226 21 H -0.191 1.191 22 C 0.016 3.984 23 C -0.069 4.069 24 H 0.124 0.876 25 C -0.075 4.075 26 C -0.149 4.149 27 C -0.145 4.145 28 C -0.145 4.145 29 C -0.138 4.138 30 C -0.134 4.134 31 H 0.153 0.847 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.257 0.743 35 H 0.133 0.867 36 H 0.146 0.854 37 H 0.256 0.744 38 H 0.011 0.989 39 H 0.043 0.957 40 H 0.054 0.946 41 H 0.073 0.927 42 H 0.041 0.959 43 H 0.121 0.879 44 H 0.150 0.850 45 H 0.162 0.838 46 H 0.166 0.834 47 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -11.323 2.865 -16.749 20.419 hybrid contribution 0.633 -0.378 1.489 1.662 sum -10.690 2.487 -15.259 18.796 Atomic orbital electron populations 1.23549 0.72338 1.05734 1.02875 1.86275 1.26168 1.29883 1.86671 1.18015 0.83049 0.82476 0.76011 1.90977 1.65149 1.35604 1.57272 1.44279 1.03230 1.10880 1.77442 1.21062 0.87018 0.84754 1.06999 1.20758 0.89489 0.84732 0.75402 1.90718 1.78052 1.25246 1.51225 1.45552 1.05599 1.09632 1.73734 1.22054 0.79385 0.97967 0.96463 0.90551 1.21159 0.87261 0.93739 0.91759 1.44682 1.22715 1.60781 1.06851 1.19455 0.99345 1.32189 0.86111 0.89589 1.25673 0.98952 1.00230 1.00832 1.70213 1.25274 1.39662 1.24503 0.85080 0.78388 0.76694 0.79298 1.21133 1.22586 1.19110 1.21766 0.94449 0.97004 0.85131 1.21449 0.96535 0.97527 0.91395 0.87636 1.19592 0.99146 0.95329 0.93409 1.21100 0.99985 0.98257 0.95530 1.21334 1.00250 0.99618 0.93292 1.21460 0.98480 0.93657 1.00939 1.21454 0.98888 0.99070 0.94370 1.21278 0.99900 0.97792 0.94457 0.84709 0.91886 0.91505 0.74338 0.86742 0.85358 0.74430 0.98895 0.95666 0.94566 0.92707 0.95860 0.87917 0.85011 0.83841 0.83433 0.84124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.73 10.56 113.37 1.20 1.92 16 2 O -0.38 -8.62 10.62 -55.49 -0.59 -9.21 16 3 C 0.65 17.26 8.75 129.79 1.14 18.39 16 4 O -0.60 -18.08 16.13 19.81 0.32 -17.76 16 5 N -0.70 -17.76 5.53 -594.61 -3.29 -21.05 16 6 C 0.13 2.92 6.15 85.63 0.53 3.45 16 7 C 0.51 15.38 7.90 87.66 0.69 16.08 16 8 O -0.57 -22.33 15.39 -3.03 -0.05 -22.38 16 9 N -0.69 -19.91 5.14 -436.73 -2.24 -22.15 16 10 C 0.15 5.35 2.64 46.22 0.12 5.47 16 11 H 0.08 3.04 6.34 -2.39 -0.02 3.02 16 12 C 0.19 9.28 5.13 86.73 0.45 9.72 16 13 N -0.62 -31.52 3.40 -691.99 -2.35 -33.87 16 14 C -0.24 -13.45 10.27 84.03 0.86 -12.59 16 15 H 0.09 4.54 7.84 -2.91 -0.02 4.51 16 16 C -0.06 -3.63 5.48 84.86 0.46 -3.16 16 17 N -0.95 -57.81 10.36 21.65 0.22 -57.59 16 18 Si 0.98 45.86 29.56 68.60 2.03 47.88 16 19 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 20 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 21 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 22 C 0.14 5.54 6.65 86.86 0.58 6.12 16 23 C -0.05 -1.52 2.88 -10.10 -0.03 -1.55 16 24 H 0.11 2.88 7.83 -2.39 -0.02 2.86 16 25 C -0.07 -1.94 5.00 -19.86 -0.10 -2.04 16 26 C -0.13 -3.57 8.28 22.27 0.18 -3.39 16 27 C -0.13 -2.83 10.05 22.27 0.22 -2.61 16 28 C -0.13 -2.34 10.05 22.27 0.22 -2.11 16 29 C -0.12 -2.11 10.05 22.27 0.22 -1.88 16 30 C -0.12 -2.39 9.69 22.27 0.22 -2.17 16 31 H 0.13 1.08 8.14 -2.38 -0.02 1.06 16 32 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.42 11.13 7.55 -92.70 -0.70 10.43 16 35 H 0.11 2.44 8.14 -2.39 -0.02 2.42 16 36 H 0.13 2.28 8.14 -2.39 -0.02 2.26 16 37 H 0.42 8.83 8.53 -92.71 -0.79 8.04 16 38 H -0.01 -0.43 7.61 -2.39 -0.02 -0.45 16 39 H 0.03 1.38 7.18 -2.39 -0.02 1.36 16 40 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 41 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 42 H 0.02 0.93 7.05 -2.38 -0.02 0.92 16 43 H 0.10 3.17 7.02 -2.91 -0.02 3.15 16 44 H 0.13 2.47 8.06 -2.91 -0.02 2.45 16 45 H 0.14 1.83 8.06 -2.91 -0.02 1.80 16 46 H 0.15 1.72 8.06 -2.91 -0.02 1.69 16 47 H 0.14 2.26 7.99 -2.91 -0.02 2.24 16 Total: -1.00 -78.45 393.22 0.54 -77.91 By element: Atomic # 1 Polarization: 29.04 SS G_CDS: -0.48 Total: 28.56 kcal Atomic # 6 Polarization: 22.68 SS G_CDS: 6.97 Total: 29.65 kcal Atomic # 7 Polarization: -127.00 SS G_CDS: -7.66 Total: -134.66 kcal Atomic # 8 Polarization: -49.03 SS G_CDS: -0.32 Total: -49.35 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 2.03 Total: 47.88 kcal Total: -78.45 0.54 -77.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691191798.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.398 kcal (2) G-P(sol) polarization free energy of solvation -78.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds