Wall clock time and date at job start Wed Apr 1 2020 05:09:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.46987 * 2 1 4 4 C 1.52997 * 109.47359 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.47365 * 54.99764 * 4 3 2 6 6 C 1.50697 * 109.47402 * 174.99786 * 4 3 2 7 7 O 1.21285 * 119.99859 * 35.00076 * 6 4 3 8 8 N 1.34780 * 120.00085 * 214.99517 * 6 4 3 9 9 C 1.46502 * 119.99879 * 179.97438 * 8 6 4 10 10 H 1.09004 * 110.64199 * 325.70443 * 9 8 6 11 11 C 1.55160 * 110.71870 * 88.84968 * 9 8 6 12 12 C 1.54905 * 101.58379 * 153.86371 * 11 9 8 13 13 N 1.47425 * 104.83123 * 322.98871 * 12 11 9 14 14 C 1.36936 * 125.64892 * 204.16183 * 13 12 11 15 15 H 1.08006 * 120.00152 * 168.13992 * 14 13 12 16 16 C 1.38813 * 119.99892 * 348.13515 * 14 13 12 17 17 N 1.31617 * 120.00272 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 119.99849 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47141 * 60.00386 * 18 16 14 20 20 H 1.48498 * 109.46971 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47076 * 300.00012 * 18 16 14 22 22 C 1.47324 * 108.73488 * 24.28614 * 13 12 11 23 23 H 1.08999 * 109.84459 * 239.38730 * 22 13 12 24 24 C 1.52998 * 110.06459 * 118.12651 * 22 13 12 25 25 C 1.52997 * 109.47102 * 177.33869 * 24 22 13 26 26 S 1.81399 * 109.47044 * 294.99896 * 4 3 2 27 27 N 1.65603 * 104.45031 * 300.00053 * 26 4 3 28 28 O 1.42104 * 110.54070 * 51.62461 * 26 4 3 29 29 O 1.42105 * 110.54312 * 188.37236 * 26 4 3 30 30 H 1.09002 * 109.46491 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46535 * 299.99915 * 1 2 3 32 32 H 1.09001 * 109.46937 * 60.00353 * 1 2 3 33 33 H 1.08999 * 109.46965 * 240.00404 * 2 1 3 34 34 H 1.09003 * 109.47240 * 120.00091 * 2 1 3 35 35 H 1.09003 * 109.47706 * 59.99926 * 3 2 1 36 36 H 1.09003 * 109.47205 * 300.00112 * 3 2 1 37 37 H 0.96996 * 120.00036 * 0.02562 * 8 6 4 38 38 H 1.08999 * 111.00232 * 271.93889 * 11 9 8 39 39 H 1.09001 * 111.00531 * 35.74718 * 11 9 8 40 40 H 1.09006 * 110.36682 * 81.82632 * 12 11 9 41 41 H 1.08995 * 110.36692 * 204.04072 * 12 11 9 42 42 H 0.96997 * 120.00355 * 180.02562 * 17 16 14 43 43 H 1.08996 * 109.47527 * 297.34231 * 24 22 13 44 44 H 1.09007 * 109.47150 * 57.34099 * 24 22 13 45 45 H 1.09005 * 109.47445 * 305.50100 * 25 24 22 46 46 H 1.09000 * 109.47241 * 65.50112 * 25 24 22 47 47 H 1.09008 * 109.47387 * 185.49690 * 25 24 22 48 48 H 0.96999 * 119.99824 * 359.97438 * 27 26 4 49 49 H 0.96999 * 120.00268 * 180.02562 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 1 3.9331 0.8533 -0.8427 6 6 4.0722 2.8580 -0.1245 7 8 3.4634 3.7657 0.4012 8 7 5.1981 3.1152 -0.8194 9 6 5.6860 4.4913 -0.9403 10 1 4.8522 5.1917 -0.9890 11 6 6.6313 4.8440 0.2384 12 6 7.5154 5.9490 -0.3918 13 7 7.7117 5.5237 -1.7896 14 6 8.7555 5.8907 -2.5964 15 1 8.9170 5.3821 -3.5354 16 6 9.6059 6.9165 -2.2075 17 7 9.4094 7.5361 -1.0630 18 14 11.0303 7.4167 -3.3077 19 1 10.5062 7.8646 -4.6230 20 1 11.7822 8.5271 -2.6699 21 1 11.9351 6.2557 -3.5046 22 6 6.5976 4.6407 -2.1765 23 1 6.9840 3.6654 -2.4723 24 6 5.8105 5.2639 -3.3311 25 6 4.6987 4.3068 -3.7655 26 16 4.1753 0.7196 1.5490 27 7 3.5575 1.7005 2.7317 28 8 3.5628 -0.5409 1.7838 29 8 5.5828 0.8821 1.6587 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3632 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 1.6767 1.9564 0.8900 36 1 1.6767 1.9563 -0.8900 37 1 5.6849 2.3893 -1.2401 38 1 6.0687 5.2310 1.0880 39 1 7.2311 3.9818 0.5298 40 1 7.0035 6.9107 -0.3562 41 1 8.4726 6.0101 0.1258 42 1 10.0034 8.2531 -0.7913 43 1 5.3714 6.2065 -3.0045 44 1 6.4810 5.4470 -4.1708 45 1 5.1285 3.3327 -3.9992 46 1 3.9748 4.2002 -2.9577 47 1 4.2006 4.7057 -4.6494 48 1 3.0067 2.4619 2.4915 49 1 3.7471 1.5141 3.6645 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691995975.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:09:12 Heat of formation + Delta-G solvation = -96.427492 kcal Electronic energy + Delta-G solvation = -30606.581173 eV Core-core repulsion = 26503.163840 eV Total energy + Delta-G solvation = -4103.417333 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 2.12 seconds Orbital eigenvalues (eV) -40.21641 -38.00678 -37.55272 -36.26861 -35.70362 -34.24841 -33.29806 -32.86964 -31.90301 -31.01339 -28.98220 -26.78657 -25.35651 -24.21362 -22.34115 -21.76247 -20.95913 -20.26824 -19.98145 -19.50522 -18.35400 -17.83815 -16.96264 -16.89234 -16.32117 -15.97160 -15.82858 -14.90068 -14.81877 -14.56060 -14.19866 -14.12714 -13.97737 -13.81049 -13.33979 -13.15282 -12.78518 -12.73813 -12.45006 -12.40763 -12.32439 -12.09230 -11.99571 -11.82258 -11.71457 -11.35953 -11.28822 -11.21979 -10.92864 -10.86269 -10.68890 -10.59919 -10.58431 -10.51316 -10.36838 -10.13382 -9.94380 -9.75379 -9.66943 -8.82441 -8.61385 -6.86226 -5.75984 -3.12934 -0.21201 2.33711 2.51627 2.90779 3.24490 3.38219 3.42830 3.43939 3.72376 4.12492 4.45392 4.48304 4.53275 4.73743 4.81981 5.12974 5.18814 5.28158 5.29625 5.44206 5.47281 5.50408 5.50775 5.65514 5.73352 5.75298 5.77322 5.84329 5.88744 5.97275 6.09565 6.14050 6.18979 6.33440 6.39555 6.47393 6.61307 6.65810 6.85914 6.88451 7.03215 7.39954 7.51108 7.57353 7.77895 7.99420 8.24540 9.15794 9.76487 10.42976 11.34799 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.019084 B = 0.002914 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.863663 B = 9606.144008 C =10351.725647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.169 4.169 3 C -0.086 4.086 4 C -0.617 4.617 5 H 0.160 0.840 6 C 0.531 3.469 7 O -0.525 6.525 8 N -0.696 5.696 9 C 0.135 3.865 10 H 0.097 0.903 11 C -0.159 4.159 12 C 0.172 3.828 13 N -0.594 5.594 14 C -0.228 4.228 15 H 0.075 0.925 16 C -0.004 4.004 17 N -0.917 5.917 18 Si 0.912 3.088 19 H -0.285 1.285 20 H -0.290 1.290 21 H -0.285 1.285 22 C 0.160 3.840 23 H 0.037 0.963 24 C -0.132 4.132 25 C -0.147 4.147 26 S 2.628 3.372 27 N -1.244 6.244 28 O -0.950 6.950 29 O -0.946 6.946 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.053 0.947 33 H 0.068 0.932 34 H 0.107 0.893 35 H 0.084 0.916 36 H 0.088 0.912 37 H 0.401 0.599 38 H 0.064 0.936 39 H 0.068 0.932 40 H 0.025 0.975 41 H 0.081 0.919 42 H 0.254 0.746 43 H 0.059 0.941 44 H 0.065 0.935 45 H 0.047 0.953 46 H 0.047 0.953 47 H 0.045 0.955 48 H 0.421 0.579 49 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.588 -14.260 3.280 22.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.207 4.207 3 C -0.125 4.125 4 C -0.727 4.727 5 H 0.178 0.822 6 C 0.313 3.687 7 O -0.401 6.401 8 N -0.345 5.345 9 C 0.031 3.969 10 H 0.115 0.885 11 C -0.198 4.198 12 C 0.047 3.953 13 N -0.318 5.318 14 C -0.357 4.357 15 H 0.093 0.907 16 C -0.201 4.201 17 N -0.564 5.564 18 Si 0.742 3.258 19 H -0.211 1.211 20 H -0.216 1.216 21 H -0.211 1.211 22 C 0.052 3.948 23 H 0.055 0.945 24 C -0.172 4.172 25 C -0.205 4.205 26 S 2.716 3.284 27 N -0.921 5.921 28 O -0.938 6.938 29 O -0.935 6.935 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.087 0.913 34 H 0.125 0.875 35 H 0.103 0.897 36 H 0.107 0.893 37 H 0.236 0.764 38 H 0.083 0.917 39 H 0.086 0.914 40 H 0.043 0.957 41 H 0.100 0.900 42 H 0.065 0.935 43 H 0.077 0.923 44 H 0.084 0.916 45 H 0.066 0.934 46 H 0.066 0.934 47 H 0.064 0.936 48 H 0.249 0.751 49 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -16.165 -14.307 3.625 21.889 hybrid contribution 0.519 0.704 -1.112 1.414 sum -15.646 -13.603 2.514 20.885 Atomic orbital electron populations 1.21691 0.94898 1.01997 1.01934 1.22261 0.97461 0.95424 1.05511 1.21292 0.86487 0.99014 1.05679 1.30659 1.09656 1.07159 1.25242 0.82217 1.19039 0.81380 0.87855 0.80398 1.90735 1.57071 1.45219 1.47115 1.46094 1.25133 1.11075 1.52207 1.22271 0.96829 0.80697 0.97132 0.88466 1.23474 0.98180 1.01401 0.96765 1.21498 0.97876 0.91691 0.84209 1.44509 1.21873 1.55559 1.09888 1.18905 1.02775 1.12870 1.01122 0.90685 1.24868 0.99959 0.97532 0.97696 1.69905 1.39418 1.25877 1.21190 0.86214 0.81946 0.77943 0.79716 1.21140 1.21589 1.21125 1.21127 0.88116 0.94638 0.90923 0.94536 1.22018 0.96807 0.98555 0.99818 1.21782 0.98879 0.99576 1.00286 1.04525 0.74409 0.74075 0.75414 1.52954 1.70887 1.46651 1.21623 1.93552 1.77221 1.40174 1.82894 1.93672 1.29815 1.85772 1.84235 0.92300 0.92461 0.92773 0.91299 0.87498 0.89699 0.89319 0.76368 0.91738 0.91376 0.95666 0.90043 0.93542 0.92267 0.91608 0.93436 0.93401 0.93592 0.75052 0.74932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.91 37.16 0.37 -0.62 16 2 C -0.17 -1.27 5.65 -26.73 -0.15 -1.42 16 3 C -0.09 -0.68 4.21 -26.73 -0.11 -0.79 16 4 C -0.62 -5.52 2.75 -27.89 -0.08 -5.59 16 5 H 0.16 0.94 8.11 -51.92 -0.42 0.52 16 6 C 0.53 6.63 6.59 -10.99 -0.07 6.56 16 7 O -0.52 -7.70 15.19 5.55 0.08 -7.62 16 8 N -0.70 -9.37 4.92 -52.03 -0.26 -9.63 16 9 C 0.13 2.30 1.95 -66.09 -0.13 2.17 16 10 H 0.10 1.75 7.25 -51.93 -0.38 1.37 16 11 C -0.16 -3.06 6.77 -24.58 -0.17 -3.22 16 12 C 0.17 4.10 5.46 -2.53 -0.01 4.08 16 13 N -0.59 -14.37 3.14 -162.35 -0.51 -14.88 16 14 C -0.23 -6.09 9.80 -15.06 -0.15 -6.24 16 15 H 0.08 1.93 7.83 -52.48 -0.41 1.52 16 16 C 0.00 -0.10 5.47 -17.43 -0.10 -0.20 16 17 N -0.92 -26.31 10.47 55.49 0.58 -25.73 16 18 Si 0.91 21.65 29.55 -169.99 -5.02 16.63 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 20 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 22 C 0.16 3.06 2.95 -66.79 -0.20 2.86 16 23 H 0.04 0.68 7.70 -51.93 -0.40 0.28 16 24 C -0.13 -2.34 5.42 -26.73 -0.14 -2.48 16 25 C -0.15 -2.03 9.57 37.16 0.36 -1.67 16 26 S 2.63 27.09 5.46 -107.50 -0.59 26.50 16 27 N -1.24 -10.69 9.13 60.35 0.55 -10.14 16 28 O -0.95 -10.91 14.89 -57.54 -0.86 -11.77 16 29 O -0.95 -13.44 18.01 -57.54 -1.04 -14.48 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.11 0.93 4.90 -51.93 -0.25 0.68 16 35 H 0.08 0.63 6.96 -51.93 -0.36 0.27 16 36 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.40 4.57 8.31 -40.82 -0.34 4.24 16 38 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 40 H 0.03 0.65 8.12 -51.93 -0.42 0.23 16 41 H 0.08 2.17 6.72 -51.93 -0.35 1.82 16 42 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 43 H 0.06 1.12 8.08 -51.93 -0.42 0.70 16 44 H 0.07 1.26 7.93 -51.92 -0.41 0.84 16 45 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.05 0.64 7.38 -51.93 -0.38 0.26 16 47 H 0.04 0.58 8.14 -51.92 -0.42 0.16 16 48 H 0.42 3.38 6.95 -34.47 -0.24 3.14 16 49 H 0.42 2.89 8.96 -34.47 -0.31 2.58 16 LS Contribution 395.39 15.07 5.96 5.96 Total: -1.00 -33.82 395.39 -9.71 -43.54 By element: Atomic # 1 Polarization: 16.23 SS G_CDS: -8.04 Total: 8.19 kcal Atomic # 6 Polarization: -5.99 SS G_CDS: -0.58 Total: -6.57 kcal Atomic # 7 Polarization: -60.75 SS G_CDS: 0.37 Total: -60.38 kcal Atomic # 8 Polarization: -32.05 SS G_CDS: -1.81 Total: -33.86 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Atomic # 16 Polarization: 27.09 SS G_CDS: -0.59 Total: 26.50 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -33.82 -9.71 -43.54 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691995975.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.889 kcal (2) G-P(sol) polarization free energy of solvation -33.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.12 seconds