Wall clock time and date at job start Wed Apr 1 2020 04:55:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 C 1.53001 * 109.46886 * 180.02562 * 3 2 1 5 5 H 1.08994 * 109.47704 * 54.99481 * 4 3 2 6 6 C 1.50701 * 109.47025 * 175.00080 * 4 3 2 7 7 O 1.21274 * 120.00206 * 34.99369 * 6 4 3 8 8 N 1.34777 * 119.99730 * 214.99710 * 6 4 3 9 9 C 1.48125 * 127.03382 * 359.68039 * 8 6 4 10 10 C 1.54602 * 103.42045 * 219.28752 * 9 8 6 11 11 C 1.54613 * 102.91165 * 322.86585 * 10 9 8 12 12 C 1.52995 * 110.32984 * 262.80882 * 11 10 9 13 13 C 1.53007 * 110.32514 * 140.59313 * 11 10 9 14 14 N 1.46501 * 109.46953 * 64.37594 * 13 11 10 15 15 C 1.36937 * 119.99664 * 179.97438 * 14 13 11 16 16 H 1.07993 * 120.00307 * 0.02562 * 15 14 13 17 17 C 1.38816 * 119.99640 * 180.02562 * 15 14 13 18 18 N 1.31617 * 120.00144 * 0.02562 * 17 15 14 19 19 Si 1.86794 * 119.99928 * 179.97438 * 17 15 14 20 20 H 1.48509 * 109.46973 * 60.00351 * 19 17 15 21 21 H 1.48501 * 109.47581 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47403 * 300.00368 * 19 17 15 23 23 C 1.47486 * 127.03573 * 179.97438 * 8 6 4 24 24 S 1.81408 * 109.46896 * 294.99544 * 4 3 2 25 25 N 1.65599 * 104.45032 * 300.00120 * 24 4 3 26 26 O 1.42103 * 110.54194 * 51.62564 * 24 4 3 27 27 O 1.42098 * 110.54420 * 188.37545 * 24 4 3 28 28 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 30 30 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 31 31 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 32 32 H 1.09001 * 109.46832 * 119.99872 * 2 1 3 33 33 H 1.09001 * 109.47194 * 299.99650 * 3 2 1 34 34 H 1.08992 * 109.47399 * 59.99823 * 3 2 1 35 35 H 1.08996 * 110.65904 * 337.77397 * 9 8 6 36 36 H 1.08996 * 110.66058 * 100.88950 * 9 8 6 37 37 H 1.09000 * 110.83133 * 204.44525 * 10 9 8 38 38 H 1.08998 * 110.72803 * 81.24871 * 10 9 8 39 39 H 1.08998 * 109.47103 * 175.62584 * 12 11 10 40 40 H 1.09005 * 109.46994 * 295.62172 * 12 11 10 41 41 H 1.08997 * 109.47562 * 55.62237 * 12 11 10 42 42 H 1.08999 * 109.47341 * 184.37988 * 13 11 10 43 43 H 1.09002 * 109.47052 * 304.38290 * 13 11 10 44 44 H 0.96998 * 120.00063 * 0.02562 * 14 13 11 45 45 H 0.97001 * 120.00135 * 180.02562 * 18 17 15 46 46 H 1.09000 * 109.91202 * 273.87574 * 23 8 6 47 47 H 1.09005 * 109.90990 * 34.95689 * 23 8 6 48 48 H 0.97008 * 120.00085 * 0.02562 * 25 24 4 49 49 H 0.97000 * 120.00352 * 179.97438 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9330 0.8531 -0.8426 6 6 4.0723 2.8579 -0.1245 7 8 3.4635 3.7656 0.4011 8 7 5.1981 3.1150 -0.8194 9 6 6.0620 2.1323 -1.5137 10 6 7.4917 2.6466 -1.2283 11 6 7.3246 4.1826 -1.2879 12 6 7.7286 4.7080 -2.6669 13 6 8.1631 4.8512 -0.1966 14 7 9.5842 4.6027 -0.4516 15 6 10.5310 5.1078 0.3991 16 1 10.2301 5.6889 1.2582 17 6 11.8775 4.8728 0.1572 18 7 12.2443 4.1650 -0.8901 19 14 13.1691 5.5624 1.3172 20 1 12.9496 5.0190 2.6817 21 1 14.5207 5.1737 0.8406 22 1 13.0638 7.0433 1.3513 23 6 5.8252 4.4317 -1.0391 24 16 4.1752 0.7195 1.5492 25 7 3.5575 1.7005 2.7317 26 8 3.5626 -0.5410 1.7841 27 8 5.5826 0.8818 1.6589 28 1 -0.3635 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9563 0.8899 35 1 5.9223 1.1351 -1.0964 36 1 5.8617 2.1336 -2.5851 37 1 8.1871 2.3040 -1.9945 38 1 7.8244 2.3326 -0.2389 39 1 7.5325 5.7789 -2.7194 40 1 8.7909 4.5248 -2.8286 41 1 7.1504 4.1946 -3.4351 42 1 7.9755 5.9249 -0.2008 43 1 7.8908 4.4385 0.7748 44 1 9.8545 4.0811 -1.2234 45 1 13.1852 4.0005 -1.0589 46 1 5.3796 4.9146 -1.9087 47 1 5.6913 5.0584 -0.1574 48 1 3.0060 2.4616 2.4915 49 1 3.7464 1.5137 3.6646 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699849549.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:55:12 Heat of formation + Delta-G solvation = -99.087116 kcal Electronic energy + Delta-G solvation = -30413.504607 eV Core-core repulsion = 26309.971944 eV Total energy + Delta-G solvation = -4103.532663 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 2.33 seconds Orbital eigenvalues (eV) -40.54159 -38.49713 -37.57937 -36.28041 -35.77402 -34.93174 -33.34522 -32.84226 -31.24658 -30.24676 -29.47971 -26.91959 -25.85406 -24.65185 -23.22489 -22.39032 -21.82175 -20.23458 -19.49536 -18.87294 -18.40003 -17.70756 -17.18283 -16.90077 -16.45663 -16.19481 -15.72463 -15.54000 -14.74720 -14.49319 -14.25549 -14.19237 -14.02862 -13.70463 -13.38097 -13.28240 -12.95805 -12.80531 -12.59484 -12.49072 -12.43465 -12.39698 -12.32720 -12.16828 -11.89007 -11.79096 -11.40684 -11.37258 -11.31158 -11.00813 -10.78103 -10.65160 -10.62982 -10.60540 -10.33385 -10.27415 -10.18499 -9.91962 -9.63868 -8.88277 -8.83860 -6.88916 -5.74323 -3.01940 -0.25147 2.20259 2.38140 2.67227 3.21545 3.46767 3.50953 3.52014 3.58715 3.86206 4.37019 4.44448 4.56461 4.64923 4.65301 4.73119 4.80228 5.04481 5.08175 5.19959 5.21476 5.34657 5.39953 5.41428 5.43957 5.60599 5.68417 5.70782 5.78318 5.80512 5.82502 5.83931 5.90285 6.04706 6.08045 6.21047 6.26890 6.38788 6.56251 6.67545 6.77436 6.84658 6.87160 7.24284 7.70548 7.73157 8.45125 9.56648 10.13608 10.49058 11.48690 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.017888 B = 0.002799 C = 0.002614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.956103 B =10001.334055 C =10710.789041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.169 4.169 3 C -0.086 4.086 4 C -0.616 4.616 5 H 0.160 0.840 6 C 0.551 3.449 7 O -0.528 6.528 8 N -0.601 5.601 9 C 0.090 3.910 10 C -0.120 4.120 11 C -0.080 4.080 12 C -0.133 4.133 13 C 0.166 3.834 14 N -0.728 5.728 15 C -0.237 4.237 16 H 0.069 0.931 17 C -0.014 4.014 18 N -0.935 5.935 19 Si 0.907 3.093 20 H -0.286 1.286 21 H -0.292 1.292 22 H -0.287 1.287 23 C 0.116 3.884 24 S 2.625 3.375 25 N -1.244 6.244 26 O -0.947 6.947 27 O -0.938 6.938 28 H 0.059 0.941 29 H 0.056 0.944 30 H 0.053 0.947 31 H 0.069 0.931 32 H 0.108 0.892 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.088 0.912 38 H 0.090 0.910 39 H 0.055 0.945 40 H 0.075 0.925 41 H 0.046 0.954 42 H 0.021 0.979 43 H 0.023 0.977 44 H 0.385 0.615 45 H 0.255 0.745 46 H 0.072 0.928 47 H 0.083 0.917 48 H 0.420 0.580 49 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.839 -8.041 -1.583 25.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.207 4.207 3 C -0.124 4.124 4 C -0.725 4.725 5 H 0.178 0.822 6 C 0.336 3.664 7 O -0.405 6.405 8 N -0.333 5.333 9 C -0.032 4.032 10 C -0.158 4.158 11 C -0.081 4.081 12 C -0.190 4.190 13 C 0.038 3.962 14 N -0.373 5.373 15 C -0.368 4.368 16 H 0.087 0.913 17 C -0.210 4.210 18 N -0.584 5.584 19 Si 0.738 3.262 20 H -0.213 1.213 21 H -0.217 1.217 22 H -0.214 1.214 23 C -0.006 4.006 24 S 2.712 3.288 25 N -0.921 5.921 26 O -0.936 6.936 27 O -0.927 6.927 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.087 0.913 32 H 0.126 0.874 33 H 0.106 0.894 34 H 0.103 0.897 35 H 0.092 0.908 36 H 0.098 0.902 37 H 0.107 0.893 38 H 0.109 0.891 39 H 0.074 0.926 40 H 0.093 0.907 41 H 0.065 0.935 42 H 0.038 0.962 43 H 0.041 0.959 44 H 0.219 0.781 45 H 0.065 0.935 46 H 0.090 0.910 47 H 0.101 0.899 48 H 0.248 0.752 49 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -23.519 -8.376 -1.173 24.993 hybrid contribution 0.467 0.851 0.076 0.974 sum -23.052 -7.525 -1.097 24.273 Atomic orbital electron populations 1.21687 0.94820 1.02079 1.01909 1.22260 0.97505 0.95311 1.05598 1.21298 0.86397 0.99147 1.05583 1.30663 1.09536 1.06689 1.25625 0.82242 1.18631 0.80170 0.88095 0.79513 1.90731 1.56552 1.45559 1.47684 1.48735 1.23478 1.10869 1.50263 1.22745 0.91166 0.92356 0.96921 1.22749 0.94082 0.94299 1.04653 1.21682 0.92711 0.95889 0.97836 1.21820 1.02791 1.00527 0.93881 1.20714 0.85430 0.96219 0.93799 1.42326 0.99037 1.64371 1.31535 1.19179 0.86771 1.26310 1.04539 0.91323 1.24704 0.97000 1.00950 0.98298 1.69635 1.15717 1.44207 1.28824 0.86270 0.81079 0.78539 0.80315 1.21297 1.21748 1.21355 1.22283 0.92272 0.83922 1.02112 1.04666 0.74566 0.74161 0.75376 1.52968 1.70856 1.46591 1.21716 1.93555 1.77268 1.40004 1.82794 1.93701 1.29390 1.85621 1.84001 0.92213 0.92441 0.92801 0.91264 0.87439 0.89417 0.89704 0.90764 0.90213 0.89349 0.89116 0.92593 0.90653 0.93461 0.96161 0.95932 0.78062 0.93526 0.90968 0.89869 0.75180 0.74818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.91 37.16 0.37 -0.56 16 2 C -0.17 -1.24 5.65 -26.73 -0.15 -1.39 16 3 C -0.09 -0.66 4.21 -26.73 -0.11 -0.77 16 4 C -0.62 -5.63 2.25 -27.88 -0.06 -5.70 16 5 H 0.16 1.05 6.75 -51.93 -0.35 0.70 16 6 C 0.55 6.76 6.65 -10.98 -0.07 6.68 16 7 O -0.53 -7.44 15.84 5.56 0.09 -7.35 16 8 N -0.60 -7.64 3.29 -169.96 -0.56 -8.20 16 9 C 0.09 1.02 6.66 -2.31 -0.02 1.01 16 10 C -0.12 -1.76 5.72 -25.04 -0.14 -1.90 16 11 C -0.08 -1.23 0.67 -153.13 -0.10 -1.33 16 12 C -0.13 -1.90 8.05 37.15 0.30 -1.60 16 13 C 0.17 3.32 4.85 -4.04 -0.02 3.30 16 14 N -0.73 -17.96 5.12 -59.90 -0.31 -18.27 16 15 C -0.24 -6.62 9.99 -15.06 -0.15 -6.77 16 16 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 17 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 18 N -0.93 -27.95 13.06 55.49 0.72 -27.23 16 19 Si 0.91 22.58 29.55 -169.99 -5.02 17.56 16 20 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 21 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 23 C 0.12 1.59 6.28 -2.97 -0.02 1.57 16 24 S 2.63 28.38 5.46 -107.50 -0.59 27.79 16 25 N -1.24 -11.05 9.13 60.35 0.55 -10.50 16 26 O -0.95 -11.25 14.89 -57.54 -0.86 -12.11 16 27 O -0.94 -14.03 18.01 -57.54 -1.04 -15.06 16 28 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.11 0.94 4.90 -51.93 -0.25 0.68 16 33 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.08 0.60 6.96 -51.93 -0.36 0.24 16 35 H 0.07 0.72 6.90 -51.93 -0.36 0.36 16 36 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.09 1.25 7.85 -51.93 -0.41 0.84 16 38 H 0.09 1.60 7.84 -51.93 -0.41 1.19 16 39 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.07 1.28 6.75 -51.93 -0.35 0.92 16 41 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.02 0.49 8.11 -51.93 -0.42 0.07 16 44 H 0.38 9.75 6.18 -40.82 -0.25 9.50 16 45 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 46 H 0.07 0.87 7.68 -51.93 -0.40 0.47 16 47 H 0.08 1.22 7.60 -51.93 -0.39 0.83 16 48 H 0.42 3.37 6.95 -34.47 -0.24 3.13 16 49 H 0.42 3.06 8.96 -34.47 -0.31 2.75 16 LS Contribution 394.95 15.07 5.95 5.95 Total: -1.00 -35.41 394.95 -9.19 -44.60 By element: Atomic # 1 Polarization: 18.64 SS G_CDS: -7.86 Total: 10.79 kcal Atomic # 6 Polarization: -7.69 SS G_CDS: -0.28 Total: -7.96 kcal Atomic # 7 Polarization: -64.61 SS G_CDS: 0.41 Total: -64.20 kcal Atomic # 8 Polarization: -32.71 SS G_CDS: -1.80 Total: -34.52 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.56 kcal Atomic # 16 Polarization: 28.38 SS G_CDS: -0.59 Total: 27.79 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -35.41 -9.19 -44.60 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699849549.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.491 kcal (2) G-P(sol) polarization free energy of solvation -35.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.33 seconds