Wall clock time and date at job start Wed Apr 1 2020 04:44:59
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 C 1.52997 * 109.52527 * 2 1
4 4 C 1.53190 * 109.49938 * 239.91553 * 2 1 3
5 5 N 1.46925 * 108.77872 * 294.68698 * 4 2 1
6 6 C 1.36935 * 120.63123 * 126.41196 * 5 4 2
7 7 H 1.08000 * 119.99635 * 207.68017 * 6 5 4
8 8 C 1.38808 * 120.00357 * 27.67664 * 6 5 4
9 9 N 1.31625 * 119.99512 * 17.35416 * 8 6 5
10 10 Si 1.86797 * 120.00236 * 197.35705 * 8 6 5
11 11 H 1.48499 * 109.47340 * 90.00086 * 10 8 6
12 12 H 1.48500 * 109.46884 * 209.99942 * 10 8 6
13 13 H 1.48499 * 109.47207 * 329.99754 * 10 8 6
14 14 C 1.46928 * 118.73637 * 306.39000 * 5 4 2
15 15 C 1.53193 * 108.76495 * 53.61722 * 14 5 4
16 16 C 1.53042 * 109.49373 * 120.07810 * 2 1 3
17 17 H 1.09004 * 109.45759 * 178.59415 * 16 2 1
18 18 N 1.46500 * 109.46441 * 298.56508 * 16 2 1
19 19 C 1.34770 * 120.00300 * 205.03107 * 18 16 2
20 20 O 1.21286 * 120.00229 * 359.97438 * 19 18 16
21 21 C 1.50698 * 120.00134 * 180.02562 * 19 18 16
22 22 C 1.52999 * 109.47106 * 179.97438 * 21 19 18
23 23 N 1.46505 * 109.46989 * 179.97438 * 22 21 19
24 24 S 1.65597 * 119.99957 * 165.27654 * 23 22 21
25 25 C 1.81396 * 104.45197 * 64.72603 * 24 23 22
26 26 O 1.42107 * 104.27926 * 180.79951 * 24 23 22
27 27 O 1.42106 * 104.27948 * 308.65595 * 24 23 22
28 28 H 1.08995 * 109.47249 * 299.92459 * 1 2 3
29 29 H 1.08997 * 109.46620 * 59.92058 * 1 2 3
30 30 H 1.08991 * 109.47246 * 179.91729 * 1 2 3
31 31 H 1.08996 * 109.47424 * 180.02562 * 3 2 1
32 32 H 1.08998 * 109.47328 * 300.08183 * 3 2 1
33 33 H 1.08999 * 109.47470 * 60.07818 * 3 2 1
34 34 H 1.08997 * 109.58500 * 54.47245 * 4 2 1
35 35 H 1.09001 * 109.58346 * 174.89518 * 4 2 1
36 36 H 0.97004 * 119.99733 * 180.02562 * 9 8 6
37 37 H 1.08999 * 109.58794 * 173.39361 * 14 5 4
38 38 H 1.08993 * 109.58957 * 293.82165 * 14 5 4
39 39 H 1.08999 * 109.48990 * 185.40038 * 15 14 5
40 40 H 1.09003 * 109.51328 * 65.30155 * 15 14 5
41 41 H 0.97005 * 119.99350 * 25.02603 * 18 16 2
42 42 H 1.09004 * 109.46974 * 59.99688 * 21 19 18
43 43 H 1.09001 * 109.47340 * 300.00019 * 21 19 18
44 44 H 1.09004 * 109.47085 * 60.00213 * 22 21 19
45 45 H 1.08998 * 109.47463 * 299.99485 * 22 21 19
46 46 H 0.97002 * 120.00141 * 345.00783 * 23 22 21
47 47 H 1.09003 * 109.47288 * 59.99792 * 25 24 23
48 48 H 1.08994 * 109.47785 * 180.02562 * 25 24 23
49 49 H 1.09003 * 109.47436 * 300.00186 * 25 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0414 1.4420 0.0000
4 6 2.0414 -0.7239 -1.2495
5 7 1.6516 -2.1382 -1.1695
6 6 0.9640 -2.7314 -2.1944
7 1 0.3081 -3.5655 -1.9930
8 6 1.1100 -2.2609 -3.4921
9 7 2.1348 -1.4957 -3.8032
10 14 -0.1479 -2.7135 -4.7968
11 1 -1.2302 -1.6968 -4.8148
12 1 0.5120 -2.7574 -6.1264
13 1 -0.7254 -4.0459 -4.4866
14 6 2.0140 -2.9040 0.0309
15 6 1.5027 -2.1557 1.2659
16 6 2.0407 -0.7230 1.2484
17 1 3.1305 -0.7446 1.2353
18 7 1.5810 -0.0144 2.4454
19 6 2.2700 -0.1222 3.5986
20 8 3.2703 -0.8063 3.6458
21 6 1.7967 0.6063 4.8300
22 6 2.7492 0.3165 5.9917
23 7 2.2895 1.0252 7.1886
24 16 2.8976 0.6211 8.6750
25 6 4.6567 1.0529 8.5771
26 8 2.2213 1.4859 9.5773
27 8 2.7335 -0.7885 8.7493
28 1 -0.3633 0.5126 0.8906
29 1 -0.3632 0.5151 -0.8893
30 1 -0.3633 -1.0276 -0.0015
31 1 3.1313 1.4410 -0.0005
32 1 1.6774 1.9566 -0.8892
33 1 1.6797 1.9558 0.8907
34 1 1.6008 -0.2732 -2.1388
35 1 3.1275 -0.6463 -1.2979
36 1 2.2367 -1.1666 -4.7100
37 1 1.5554 -3.8919 -0.0136
38 1 3.0979 -3.0043 0.0869
39 1 1.8475 -2.6628 2.1670
40 1 0.4129 -2.1351 1.2539
41 1 0.7808 0.5326 2.4077
42 1 0.7938 0.2675 5.0897
43 1 1.7785 1.6783 4.6334
44 1 3.7523 0.6551 5.7322
45 1 2.7670 -0.7555 6.1882
46 1 1.6318 1.7339 7.1101
47 1 4.7584 2.1186 8.3718
48 1 5.1421 0.8169 9.5240
49 1 5.1269 0.4822 7.7762
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001700292549.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:44:59
Heat of formation + Delta-G solvation = -94.461916 kcal
Electronic energy + Delta-G solvation = -29581.185835 eV
Core-core repulsion = 25477.853736 eV
Total energy + Delta-G solvation = -4103.332099 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 347.171 amu
Computer time = 0.98 seconds
Orbital eigenvalues (eV)
-40.14964 -38.32625 -37.46783 -36.34228 -35.94740 -34.61839 -32.90969 -32.08007
-30.72953 -29.89192 -29.20624 -26.81291 -25.97810 -25.32043 -23.76057 -22.11113
-20.63635 -20.33605 -19.81063 -18.40367 -17.86825 -17.20636 -16.90534 -16.68932
-16.19955 -15.90847 -15.55421 -15.03361 -14.86674 -14.27690 -14.06442 -13.88181
-13.70550 -13.64659 -13.50953 -13.39305 -13.17987 -12.73964 -12.60823 -12.48212
-12.38896 -12.32611 -12.04593 -11.91015 -11.68918 -11.53756 -11.41653 -11.33533
-11.08714 -10.91076 -10.72058 -10.60733 -10.26114 -10.12971 -10.01105 -9.91062
-9.86160 -9.67515 -9.43027 -8.71810 -8.47699 -6.70397 -5.81994 -3.23603
-0.13050 2.27340 2.68275 3.30349 3.35630 3.42825 3.42996 3.43772
3.81391 4.25680 4.38975 4.46918 4.54486 4.71822 4.78846 5.07491
5.13565 5.20537 5.24320 5.25594 5.37714 5.48383 5.53424 5.55188
5.68499 5.83270 5.90880 6.03106 6.05780 6.18196 6.26867 6.36751
6.42721 6.46195 6.52993 6.60227 6.67643 6.80087 6.89606 6.95713
7.01356 7.28547 7.56679 7.66742 7.77896 8.31101 8.41839 9.18263
9.81493 10.38249 11.26640
Molecular weight = 347.17amu
Principal moments of inertia in cm(-1)
A = 0.031324 B = 0.002000 C = 0.001973
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 893.656693 B =13997.215826 C =14191.353999
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.127 4.127
2 C -0.097 4.097
3 C -0.133 4.133
4 C 0.186 3.814
5 N -0.590 5.590
6 C -0.249 4.249
7 H 0.066 0.934
8 C 0.003 3.997
9 N -0.902 5.902
10 Si 0.901 3.099
11 H -0.288 1.288
12 H -0.292 1.292
13 H -0.279 1.279
14 C 0.147 3.853
15 C -0.143 4.143
16 C 0.163 3.837
17 H 0.081 0.919
18 N -0.719 5.719
19 C 0.512 3.488
20 O -0.543 6.543
21 C -0.149 4.149
22 C 0.128 3.872
23 N -1.122 6.122
24 S 2.617 3.383
25 C -0.674 4.674
26 O -0.962 6.962
27 O -0.954 6.954
28 H 0.029 0.971
29 H 0.051 0.949
30 H 0.070 0.930
31 H 0.050 0.950
32 H 0.055 0.945
33 H 0.042 0.958
34 H 0.093 0.907
35 H 0.019 0.981
36 H 0.254 0.746
37 H 0.056 0.944
38 H 0.020 0.980
39 H 0.054 0.946
40 H 0.063 0.937
41 H 0.396 0.604
42 H 0.101 0.899
43 H 0.099 0.901
44 H 0.074 0.926
45 H 0.091 0.909
46 H 0.417 0.583
47 H 0.129 0.871
48 H 0.128 0.872
49 H 0.130 0.870
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.019 10.211 20.547 22.967
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.184 4.184
2 C -0.100 4.100
3 C -0.191 4.191
4 C 0.059 3.941
5 N -0.312 5.312
6 C -0.379 4.379
7 H 0.083 0.917
8 C -0.196 4.196
9 N -0.547 5.547
10 Si 0.731 3.269
11 H -0.215 1.215
12 H -0.218 1.218
13 H -0.205 1.205
14 C 0.020 3.980
15 C -0.183 4.183
16 C 0.059 3.941
17 H 0.099 0.901
18 N -0.369 5.369
19 C 0.296 3.704
20 O -0.421 6.421
21 C -0.191 4.191
22 C 0.002 3.998
23 N -0.882 5.882
24 S 2.709 3.291
25 C -0.824 4.824
26 O -0.953 6.953
27 O -0.944 6.944
28 H 0.048 0.952
29 H 0.070 0.930
30 H 0.089 0.911
31 H 0.069 0.931
32 H 0.074 0.926
33 H 0.061 0.939
34 H 0.111 0.889
35 H 0.037 0.963
36 H 0.064 0.936
37 H 0.074 0.926
38 H 0.038 0.962
39 H 0.073 0.927
40 H 0.082 0.918
41 H 0.231 0.769
42 H 0.120 0.880
43 H 0.117 0.883
44 H 0.092 0.908
45 H 0.109 0.891
46 H 0.251 0.749
47 H 0.148 0.852
48 H 0.147 0.853
49 H 0.149 0.851
Dipole moment (debyes) X Y Z Total
from point charges 1.456 9.221 21.120 23.091
hybrid contribution -0.667 0.761 -1.209 1.577
sum 0.789 9.982 19.910 22.286
Atomic orbital electron populations
1.21744 0.94717 1.02612 0.99348 1.21566 0.96308 0.94920 0.97171
1.21756 1.00746 0.95969 1.00646 1.20831 0.96335 0.83560 0.93375
1.44058 1.65201 1.05669 1.16225 1.19170 1.17915 1.15049 0.85766
0.91654 1.25021 0.97015 1.00603 0.96949 1.70030 1.27328 1.38494
1.18834 0.86313 0.81131 0.78235 0.81241 1.21499 1.21825 1.20464
1.20879 0.96660 0.94300 0.86180 1.22446 1.01028 0.95353 0.99477
1.21021 0.99265 0.91377 0.82417 0.90082 1.46352 1.29568 1.50491
1.10516 1.20320 0.83876 0.81680 0.84498 1.90726 1.25744 1.40747
1.84838 1.21803 1.01581 1.02383 0.93336 1.21064 0.97390 0.98063
0.83305 1.55598 1.57324 1.51301 1.23966 1.04629 0.77260 0.74563
0.72674 1.30525 1.27280 1.12724 1.11845 1.93622 1.71477 1.68151
1.62003 1.93639 1.84971 1.30468 1.85321 0.95191 0.92950 0.91072
0.93094 0.92606 0.93890 0.88877 0.96283 0.93637 0.92571 0.96248
0.92732 0.91847 0.76880 0.88046 0.88301 0.90809 0.89060 0.74850
0.85240 0.85318 0.85094
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.01 7.83 37.16 0.29 -1.72 16
2 C -0.10 -1.63 0.56 -154.39 -0.09 -1.71 16
3 C -0.13 -1.92 8.31 37.16 0.31 -1.61 16
4 C 0.19 4.12 3.99 -3.71 -0.01 4.10 16
5 N -0.59 -13.96 2.43 -172.33 -0.42 -14.38 16
6 C -0.25 -6.54 9.58 -15.06 -0.14 -6.69 16
7 H 0.07 1.70 7.89 -52.49 -0.41 1.29 16
8 C 0.00 0.07 4.91 -17.43 -0.09 -0.01 16
9 N -0.90 -25.32 11.19 55.49 0.62 -24.70 16
10 Si 0.90 21.11 29.59 -169.99 -5.03 16.08 16
11 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16
12 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16
13 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16
14 C 0.15 3.03 6.52 -3.71 -0.02 3.01 16
15 C -0.14 -2.47 5.31 -26.61 -0.14 -2.61 16
16 C 0.16 2.61 1.57 -67.89 -0.11 2.50 16
17 H 0.08 1.50 7.58 -51.93 -0.39 1.11 16
18 N -0.72 -8.77 4.29 -53.76 -0.23 -9.01 16
19 C 0.51 6.18 7.79 -10.99 -0.09 6.09 16
20 O -0.54 -8.71 15.64 5.55 0.09 -8.63 16
21 C -0.15 -1.10 5.84 -27.88 -0.16 -1.26 16
22 C 0.13 0.97 5.41 -4.04 -0.02 0.95 16
23 N -1.12 -6.51 5.89 -10.61 -0.06 -6.57 16
24 S 2.62 18.35 6.10 -107.50 -0.66 17.70 16
25 C -0.67 -2.66 10.88 101.05 1.10 -1.56 16
26 O -0.96 -9.71 18.08 -57.54 -1.04 -10.75 16
27 O -0.95 -10.82 17.51 -57.54 -1.01 -11.83 16
28 H 0.03 0.37 6.58 -51.93 -0.34 0.03 16
29 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16
30 H 0.07 1.28 5.97 -51.93 -0.31 0.97 16
31 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16
32 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16
33 H 0.04 0.51 7.36 -51.93 -0.38 0.13 16
34 H 0.09 2.33 6.04 -51.93 -0.31 2.02 16
35 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16
36 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16
37 H 0.06 1.14 7.93 -51.93 -0.41 0.73 16
38 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16
39 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16
40 H 0.06 1.08 6.33 -51.93 -0.33 0.75 16
41 H 0.40 3.91 6.66 -40.82 -0.27 3.63 16
42 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16
43 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16
44 H 0.07 0.50 8.10 -51.93 -0.42 0.08 16
45 H 0.09 0.86 7.66 -51.93 -0.40 0.46 16
46 H 0.42 1.66 8.62 -34.47 -0.30 1.36 16
47 H 0.13 0.32 8.14 -51.92 -0.42 -0.10 16
48 H 0.13 0.37 8.14 -51.93 -0.42 -0.06 16
49 H 0.13 0.46 8.14 -51.92 -0.42 0.04 16
LS Contribution 395.13 15.07 5.95 5.95
Total: -1.00 -35.57 395.13 -9.03 -44.59
By element:
Atomic # 1 Polarization: 10.12 SS G_CDS: -8.07 Total: 2.06 kcal
Atomic # 6 Polarization: -1.35 SS G_CDS: 0.83 Total: -0.52 kcal
Atomic # 7 Polarization: -54.56 SS G_CDS: -0.09 Total: -54.66 kcal
Atomic # 8 Polarization: -29.25 SS G_CDS: -1.96 Total: -31.21 kcal
Atomic # 14 Polarization: 21.11 SS G_CDS: -5.03 Total: 16.08 kcal
Atomic # 16 Polarization: 18.35 SS G_CDS: -0.66 Total: 17.70 kcal
Total LS contribution 5.95 Total: 5.95 kcal
Total: -35.57 -9.03 -44.59 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001700292549.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -49.867 kcal
(2) G-P(sol) polarization free energy of solvation -35.569 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.437 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.025 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.595 kcal
(6) G-S(sol) free energy of system = (1) + (5) -94.462 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.99 seconds