Wall clock time and date at job start Wed Apr 1 2020 04:44:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.52527 * 2 1 4 4 C 1.53190 * 109.49938 * 239.91553 * 2 1 3 5 5 N 1.46925 * 108.77872 * 294.68698 * 4 2 1 6 6 C 1.36935 * 120.63123 * 126.41196 * 5 4 2 7 7 H 1.08000 * 119.99635 * 207.68017 * 6 5 4 8 8 C 1.38808 * 120.00357 * 27.67664 * 6 5 4 9 9 N 1.31625 * 119.99512 * 17.35416 * 8 6 5 10 10 Si 1.86797 * 120.00236 * 197.35705 * 8 6 5 11 11 H 1.48499 * 109.47340 * 90.00086 * 10 8 6 12 12 H 1.48500 * 109.46884 * 209.99942 * 10 8 6 13 13 H 1.48499 * 109.47207 * 329.99754 * 10 8 6 14 14 C 1.46928 * 118.73637 * 306.39000 * 5 4 2 15 15 C 1.53193 * 108.76495 * 53.61722 * 14 5 4 16 16 C 1.53042 * 109.49373 * 120.07810 * 2 1 3 17 17 H 1.09004 * 109.45759 * 178.59415 * 16 2 1 18 18 N 1.46500 * 109.46441 * 298.56508 * 16 2 1 19 19 C 1.34770 * 120.00300 * 205.03107 * 18 16 2 20 20 O 1.21286 * 120.00229 * 359.97438 * 19 18 16 21 21 C 1.50698 * 120.00134 * 180.02562 * 19 18 16 22 22 C 1.52999 * 109.47106 * 179.97438 * 21 19 18 23 23 N 1.46505 * 109.46989 * 179.97438 * 22 21 19 24 24 S 1.65597 * 119.99957 * 165.27654 * 23 22 21 25 25 C 1.81396 * 104.45197 * 64.72603 * 24 23 22 26 26 O 1.42107 * 104.27926 * 180.79951 * 24 23 22 27 27 O 1.42106 * 104.27948 * 308.65595 * 24 23 22 28 28 H 1.08995 * 109.47249 * 299.92459 * 1 2 3 29 29 H 1.08997 * 109.46620 * 59.92058 * 1 2 3 30 30 H 1.08991 * 109.47246 * 179.91729 * 1 2 3 31 31 H 1.08996 * 109.47424 * 180.02562 * 3 2 1 32 32 H 1.08998 * 109.47328 * 300.08183 * 3 2 1 33 33 H 1.08999 * 109.47470 * 60.07818 * 3 2 1 34 34 H 1.08997 * 109.58500 * 54.47245 * 4 2 1 35 35 H 1.09001 * 109.58346 * 174.89518 * 4 2 1 36 36 H 0.97004 * 119.99733 * 180.02562 * 9 8 6 37 37 H 1.08999 * 109.58794 * 173.39361 * 14 5 4 38 38 H 1.08993 * 109.58957 * 293.82165 * 14 5 4 39 39 H 1.08999 * 109.48990 * 185.40038 * 15 14 5 40 40 H 1.09003 * 109.51328 * 65.30155 * 15 14 5 41 41 H 0.97005 * 119.99350 * 25.02603 * 18 16 2 42 42 H 1.09004 * 109.46974 * 59.99688 * 21 19 18 43 43 H 1.09001 * 109.47340 * 300.00019 * 21 19 18 44 44 H 1.09004 * 109.47085 * 60.00213 * 22 21 19 45 45 H 1.08998 * 109.47463 * 299.99485 * 22 21 19 46 46 H 0.97002 * 120.00141 * 345.00783 * 23 22 21 47 47 H 1.09003 * 109.47288 * 59.99792 * 25 24 23 48 48 H 1.08994 * 109.47785 * 180.02562 * 25 24 23 49 49 H 1.09003 * 109.47436 * 300.00186 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0414 1.4420 0.0000 4 6 2.0414 -0.7239 -1.2495 5 7 1.6516 -2.1382 -1.1695 6 6 0.9640 -2.7314 -2.1944 7 1 0.3081 -3.5655 -1.9930 8 6 1.1100 -2.2609 -3.4921 9 7 2.1348 -1.4957 -3.8032 10 14 -0.1479 -2.7135 -4.7968 11 1 -1.2302 -1.6968 -4.8148 12 1 0.5120 -2.7574 -6.1264 13 1 -0.7254 -4.0459 -4.4866 14 6 2.0140 -2.9040 0.0309 15 6 1.5027 -2.1557 1.2659 16 6 2.0407 -0.7230 1.2484 17 1 3.1305 -0.7446 1.2353 18 7 1.5810 -0.0144 2.4454 19 6 2.2700 -0.1222 3.5986 20 8 3.2703 -0.8063 3.6458 21 6 1.7967 0.6063 4.8300 22 6 2.7492 0.3165 5.9917 23 7 2.2895 1.0252 7.1886 24 16 2.8976 0.6211 8.6750 25 6 4.6567 1.0529 8.5771 26 8 2.2213 1.4859 9.5773 27 8 2.7335 -0.7885 8.7493 28 1 -0.3633 0.5126 0.8906 29 1 -0.3632 0.5151 -0.8893 30 1 -0.3633 -1.0276 -0.0015 31 1 3.1313 1.4410 -0.0005 32 1 1.6774 1.9566 -0.8892 33 1 1.6797 1.9558 0.8907 34 1 1.6008 -0.2732 -2.1388 35 1 3.1275 -0.6463 -1.2979 36 1 2.2367 -1.1666 -4.7100 37 1 1.5554 -3.8919 -0.0136 38 1 3.0979 -3.0043 0.0869 39 1 1.8475 -2.6628 2.1670 40 1 0.4129 -2.1351 1.2539 41 1 0.7808 0.5326 2.4077 42 1 0.7938 0.2675 5.0897 43 1 1.7785 1.6783 4.6334 44 1 3.7523 0.6551 5.7322 45 1 2.7670 -0.7555 6.1882 46 1 1.6318 1.7339 7.1101 47 1 4.7584 2.1186 8.3718 48 1 5.1421 0.8169 9.5240 49 1 5.1269 0.4822 7.7762 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700292549.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:59 Heat of formation + Delta-G solvation = -94.461916 kcal Electronic energy + Delta-G solvation = -29581.185835 eV Core-core repulsion = 25477.853736 eV Total energy + Delta-G solvation = -4103.332099 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.14964 -38.32625 -37.46783 -36.34228 -35.94740 -34.61839 -32.90969 -32.08007 -30.72953 -29.89192 -29.20624 -26.81291 -25.97810 -25.32043 -23.76057 -22.11113 -20.63635 -20.33605 -19.81063 -18.40367 -17.86825 -17.20636 -16.90534 -16.68932 -16.19955 -15.90847 -15.55421 -15.03361 -14.86674 -14.27690 -14.06442 -13.88181 -13.70550 -13.64659 -13.50953 -13.39305 -13.17987 -12.73964 -12.60823 -12.48212 -12.38896 -12.32611 -12.04593 -11.91015 -11.68918 -11.53756 -11.41653 -11.33533 -11.08714 -10.91076 -10.72058 -10.60733 -10.26114 -10.12971 -10.01105 -9.91062 -9.86160 -9.67515 -9.43027 -8.71810 -8.47699 -6.70397 -5.81994 -3.23603 -0.13050 2.27340 2.68275 3.30349 3.35630 3.42825 3.42996 3.43772 3.81391 4.25680 4.38975 4.46918 4.54486 4.71822 4.78846 5.07491 5.13565 5.20537 5.24320 5.25594 5.37714 5.48383 5.53424 5.55188 5.68499 5.83270 5.90880 6.03106 6.05780 6.18196 6.26867 6.36751 6.42721 6.46195 6.52993 6.60227 6.67643 6.80087 6.89606 6.95713 7.01356 7.28547 7.56679 7.66742 7.77896 8.31101 8.41839 9.18263 9.81493 10.38249 11.26640 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.031324 B = 0.002000 C = 0.001973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.656693 B =13997.215826 C =14191.353999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.097 4.097 3 C -0.133 4.133 4 C 0.186 3.814 5 N -0.590 5.590 6 C -0.249 4.249 7 H 0.066 0.934 8 C 0.003 3.997 9 N -0.902 5.902 10 Si 0.901 3.099 11 H -0.288 1.288 12 H -0.292 1.292 13 H -0.279 1.279 14 C 0.147 3.853 15 C -0.143 4.143 16 C 0.163 3.837 17 H 0.081 0.919 18 N -0.719 5.719 19 C 0.512 3.488 20 O -0.543 6.543 21 C -0.149 4.149 22 C 0.128 3.872 23 N -1.122 6.122 24 S 2.617 3.383 25 C -0.674 4.674 26 O -0.962 6.962 27 O -0.954 6.954 28 H 0.029 0.971 29 H 0.051 0.949 30 H 0.070 0.930 31 H 0.050 0.950 32 H 0.055 0.945 33 H 0.042 0.958 34 H 0.093 0.907 35 H 0.019 0.981 36 H 0.254 0.746 37 H 0.056 0.944 38 H 0.020 0.980 39 H 0.054 0.946 40 H 0.063 0.937 41 H 0.396 0.604 42 H 0.101 0.899 43 H 0.099 0.901 44 H 0.074 0.926 45 H 0.091 0.909 46 H 0.417 0.583 47 H 0.129 0.871 48 H 0.128 0.872 49 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.019 10.211 20.547 22.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.100 4.100 3 C -0.191 4.191 4 C 0.059 3.941 5 N -0.312 5.312 6 C -0.379 4.379 7 H 0.083 0.917 8 C -0.196 4.196 9 N -0.547 5.547 10 Si 0.731 3.269 11 H -0.215 1.215 12 H -0.218 1.218 13 H -0.205 1.205 14 C 0.020 3.980 15 C -0.183 4.183 16 C 0.059 3.941 17 H 0.099 0.901 18 N -0.369 5.369 19 C 0.296 3.704 20 O -0.421 6.421 21 C -0.191 4.191 22 C 0.002 3.998 23 N -0.882 5.882 24 S 2.709 3.291 25 C -0.824 4.824 26 O -0.953 6.953 27 O -0.944 6.944 28 H 0.048 0.952 29 H 0.070 0.930 30 H 0.089 0.911 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.061 0.939 34 H 0.111 0.889 35 H 0.037 0.963 36 H 0.064 0.936 37 H 0.074 0.926 38 H 0.038 0.962 39 H 0.073 0.927 40 H 0.082 0.918 41 H 0.231 0.769 42 H 0.120 0.880 43 H 0.117 0.883 44 H 0.092 0.908 45 H 0.109 0.891 46 H 0.251 0.749 47 H 0.148 0.852 48 H 0.147 0.853 49 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 1.456 9.221 21.120 23.091 hybrid contribution -0.667 0.761 -1.209 1.577 sum 0.789 9.982 19.910 22.286 Atomic orbital electron populations 1.21744 0.94717 1.02612 0.99348 1.21566 0.96308 0.94920 0.97171 1.21756 1.00746 0.95969 1.00646 1.20831 0.96335 0.83560 0.93375 1.44058 1.65201 1.05669 1.16225 1.19170 1.17915 1.15049 0.85766 0.91654 1.25021 0.97015 1.00603 0.96949 1.70030 1.27328 1.38494 1.18834 0.86313 0.81131 0.78235 0.81241 1.21499 1.21825 1.20464 1.20879 0.96660 0.94300 0.86180 1.22446 1.01028 0.95353 0.99477 1.21021 0.99265 0.91377 0.82417 0.90082 1.46352 1.29568 1.50491 1.10516 1.20320 0.83876 0.81680 0.84498 1.90726 1.25744 1.40747 1.84838 1.21803 1.01581 1.02383 0.93336 1.21064 0.97390 0.98063 0.83305 1.55598 1.57324 1.51301 1.23966 1.04629 0.77260 0.74563 0.72674 1.30525 1.27280 1.12724 1.11845 1.93622 1.71477 1.68151 1.62003 1.93639 1.84971 1.30468 1.85321 0.95191 0.92950 0.91072 0.93094 0.92606 0.93890 0.88877 0.96283 0.93637 0.92571 0.96248 0.92732 0.91847 0.76880 0.88046 0.88301 0.90809 0.89060 0.74850 0.85240 0.85318 0.85094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.01 7.83 37.16 0.29 -1.72 16 2 C -0.10 -1.63 0.56 -154.39 -0.09 -1.71 16 3 C -0.13 -1.92 8.31 37.16 0.31 -1.61 16 4 C 0.19 4.12 3.99 -3.71 -0.01 4.10 16 5 N -0.59 -13.96 2.43 -172.33 -0.42 -14.38 16 6 C -0.25 -6.54 9.58 -15.06 -0.14 -6.69 16 7 H 0.07 1.70 7.89 -52.49 -0.41 1.29 16 8 C 0.00 0.07 4.91 -17.43 -0.09 -0.01 16 9 N -0.90 -25.32 11.19 55.49 0.62 -24.70 16 10 Si 0.90 21.11 29.59 -169.99 -5.03 16.08 16 11 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 13 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 14 C 0.15 3.03 6.52 -3.71 -0.02 3.01 16 15 C -0.14 -2.47 5.31 -26.61 -0.14 -2.61 16 16 C 0.16 2.61 1.57 -67.89 -0.11 2.50 16 17 H 0.08 1.50 7.58 -51.93 -0.39 1.11 16 18 N -0.72 -8.77 4.29 -53.76 -0.23 -9.01 16 19 C 0.51 6.18 7.79 -10.99 -0.09 6.09 16 20 O -0.54 -8.71 15.64 5.55 0.09 -8.63 16 21 C -0.15 -1.10 5.84 -27.88 -0.16 -1.26 16 22 C 0.13 0.97 5.41 -4.04 -0.02 0.95 16 23 N -1.12 -6.51 5.89 -10.61 -0.06 -6.57 16 24 S 2.62 18.35 6.10 -107.50 -0.66 17.70 16 25 C -0.67 -2.66 10.88 101.05 1.10 -1.56 16 26 O -0.96 -9.71 18.08 -57.54 -1.04 -10.75 16 27 O -0.95 -10.82 17.51 -57.54 -1.01 -11.83 16 28 H 0.03 0.37 6.58 -51.93 -0.34 0.03 16 29 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.07 1.28 5.97 -51.93 -0.31 0.97 16 31 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.04 0.51 7.36 -51.93 -0.38 0.13 16 34 H 0.09 2.33 6.04 -51.93 -0.31 2.02 16 35 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 37 H 0.06 1.14 7.93 -51.93 -0.41 0.73 16 38 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.06 1.08 6.33 -51.93 -0.33 0.75 16 41 H 0.40 3.91 6.66 -40.82 -0.27 3.63 16 42 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.07 0.50 8.10 -51.93 -0.42 0.08 16 45 H 0.09 0.86 7.66 -51.93 -0.40 0.46 16 46 H 0.42 1.66 8.62 -34.47 -0.30 1.36 16 47 H 0.13 0.32 8.14 -51.92 -0.42 -0.10 16 48 H 0.13 0.37 8.14 -51.93 -0.42 -0.06 16 49 H 0.13 0.46 8.14 -51.92 -0.42 0.04 16 LS Contribution 395.13 15.07 5.95 5.95 Total: -1.00 -35.57 395.13 -9.03 -44.59 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: -8.07 Total: 2.06 kcal Atomic # 6 Polarization: -1.35 SS G_CDS: 0.83 Total: -0.52 kcal Atomic # 7 Polarization: -54.56 SS G_CDS: -0.09 Total: -54.66 kcal Atomic # 8 Polarization: -29.25 SS G_CDS: -1.96 Total: -31.21 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.03 Total: 16.08 kcal Atomic # 16 Polarization: 18.35 SS G_CDS: -0.66 Total: 17.70 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -35.57 -9.03 -44.59 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700292549.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.867 kcal (2) G-P(sol) polarization free energy of solvation -35.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds