Wall clock time and date at job start Wed Apr 1 2020 04:44:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.52527 * 2 1 4 4 C 1.53190 * 109.49938 * 239.91553 * 2 1 3 5 5 N 1.46925 * 108.77872 * 294.68698 * 4 2 1 6 6 C 1.36935 * 120.63123 * 126.41196 * 5 4 2 7 7 H 1.08000 * 119.99635 * 207.68017 * 6 5 4 8 8 C 1.38808 * 120.00357 * 27.67664 * 6 5 4 9 9 N 1.31625 * 119.99512 * 17.35416 * 8 6 5 10 10 Si 1.86797 * 120.00236 * 197.35705 * 8 6 5 11 11 H 1.48499 * 109.47340 * 90.00086 * 10 8 6 12 12 H 1.48500 * 109.46884 * 209.99942 * 10 8 6 13 13 H 1.48499 * 109.47207 * 329.99754 * 10 8 6 14 14 C 1.46928 * 118.73637 * 306.39000 * 5 4 2 15 15 C 1.53193 * 108.76495 * 53.61722 * 14 5 4 16 16 C 1.53042 * 109.49373 * 120.07810 * 2 1 3 17 17 H 1.09004 * 109.45759 * 178.59415 * 16 2 1 18 18 N 1.46500 * 109.46441 * 298.56508 * 16 2 1 19 19 C 1.34770 * 120.00300 * 205.03107 * 18 16 2 20 20 O 1.21286 * 120.00229 * 359.97438 * 19 18 16 21 21 C 1.50698 * 120.00134 * 180.02562 * 19 18 16 22 22 C 1.52999 * 109.47106 * 179.97438 * 21 19 18 23 23 N 1.46505 * 109.46989 * 179.97438 * 22 21 19 24 24 S 1.65597 * 119.99957 * 165.27654 * 23 22 21 25 25 C 1.81396 * 104.45197 * 64.72603 * 24 23 22 26 26 O 1.42107 * 104.27926 * 180.79951 * 24 23 22 27 27 O 1.42106 * 104.27948 * 308.65595 * 24 23 22 28 28 H 1.08995 * 109.47249 * 299.92459 * 1 2 3 29 29 H 1.08997 * 109.46620 * 59.92058 * 1 2 3 30 30 H 1.08991 * 109.47246 * 179.91729 * 1 2 3 31 31 H 1.08996 * 109.47424 * 180.02562 * 3 2 1 32 32 H 1.08998 * 109.47328 * 300.08183 * 3 2 1 33 33 H 1.08999 * 109.47470 * 60.07818 * 3 2 1 34 34 H 1.08997 * 109.58500 * 54.47245 * 4 2 1 35 35 H 1.09001 * 109.58346 * 174.89518 * 4 2 1 36 36 H 0.97004 * 119.99733 * 180.02562 * 9 8 6 37 37 H 1.08999 * 109.58794 * 173.39361 * 14 5 4 38 38 H 1.08993 * 109.58957 * 293.82165 * 14 5 4 39 39 H 1.08999 * 109.48990 * 185.40038 * 15 14 5 40 40 H 1.09003 * 109.51328 * 65.30155 * 15 14 5 41 41 H 0.97005 * 119.99350 * 25.02603 * 18 16 2 42 42 H 1.09004 * 109.46974 * 59.99688 * 21 19 18 43 43 H 1.09001 * 109.47340 * 300.00019 * 21 19 18 44 44 H 1.09004 * 109.47085 * 60.00213 * 22 21 19 45 45 H 1.08998 * 109.47463 * 299.99485 * 22 21 19 46 46 H 0.97002 * 120.00141 * 345.00783 * 23 22 21 47 47 H 1.09003 * 109.47288 * 59.99792 * 25 24 23 48 48 H 1.08994 * 109.47785 * 180.02562 * 25 24 23 49 49 H 1.09003 * 109.47436 * 300.00186 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0414 1.4420 0.0000 4 6 2.0414 -0.7239 -1.2495 5 7 1.6516 -2.1382 -1.1695 6 6 0.9640 -2.7314 -2.1944 7 1 0.3081 -3.5655 -1.9930 8 6 1.1100 -2.2609 -3.4921 9 7 2.1348 -1.4957 -3.8032 10 14 -0.1479 -2.7135 -4.7968 11 1 -1.2302 -1.6968 -4.8148 12 1 0.5120 -2.7574 -6.1264 13 1 -0.7254 -4.0459 -4.4866 14 6 2.0140 -2.9040 0.0309 15 6 1.5027 -2.1557 1.2659 16 6 2.0407 -0.7230 1.2484 17 1 3.1305 -0.7446 1.2353 18 7 1.5810 -0.0144 2.4454 19 6 2.2700 -0.1222 3.5986 20 8 3.2703 -0.8063 3.6458 21 6 1.7967 0.6063 4.8300 22 6 2.7492 0.3165 5.9917 23 7 2.2895 1.0252 7.1886 24 16 2.8976 0.6211 8.6750 25 6 4.6567 1.0529 8.5771 26 8 2.2213 1.4859 9.5773 27 8 2.7335 -0.7885 8.7493 28 1 -0.3633 0.5126 0.8906 29 1 -0.3632 0.5151 -0.8893 30 1 -0.3633 -1.0276 -0.0015 31 1 3.1313 1.4410 -0.0005 32 1 1.6774 1.9566 -0.8892 33 1 1.6797 1.9558 0.8907 34 1 1.6008 -0.2732 -2.1388 35 1 3.1275 -0.6463 -1.2979 36 1 2.2367 -1.1666 -4.7100 37 1 1.5554 -3.8919 -0.0136 38 1 3.0979 -3.0043 0.0869 39 1 1.8475 -2.6628 2.1670 40 1 0.4129 -2.1351 1.2539 41 1 0.7808 0.5326 2.4077 42 1 0.7938 0.2675 5.0897 43 1 1.7785 1.6783 4.6334 44 1 3.7523 0.6551 5.7322 45 1 2.7670 -0.7555 6.1882 46 1 1.6318 1.7339 7.1101 47 1 4.7584 2.1186 8.3718 48 1 5.1421 0.8169 9.5240 49 1 5.1269 0.4822 7.7762 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700292549.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:58 Heat of formation + Delta-G solvation = -122.787330 kcal Electronic energy + Delta-G solvation = -29582.414117 eV Core-core repulsion = 25477.853736 eV Total energy + Delta-G solvation = -4104.560381 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.32245 -39.62173 -38.15276 -37.02294 -36.63033 -36.15927 -34.22126 -33.82085 -31.75072 -30.58705 -30.23395 -28.10534 -27.58099 -26.85927 -24.84223 -23.46179 -22.27066 -21.29780 -20.47899 -19.63134 -18.93085 -18.49639 -17.88865 -17.32115 -17.01233 -16.94147 -16.74484 -16.49128 -15.72553 -15.61089 -15.36083 -15.22880 -15.00143 -14.78786 -14.60139 -14.21082 -13.97257 -13.94141 -13.79497 -13.29047 -13.24609 -13.18911 -13.06647 -13.02472 -12.85901 -12.73255 -12.62947 -12.60836 -12.51667 -12.37781 -12.29064 -11.93814 -11.90163 -11.80431 -11.59930 -11.28184 -11.14750 -10.76515 -10.51882 -10.39534 -9.88644 -8.66692 -7.85457 -5.29985 -0.64599 1.47995 1.49270 1.57747 1.73066 1.75293 2.36674 2.52483 2.90895 3.29302 3.31223 3.64815 3.69583 3.78430 3.99874 4.05673 4.08249 4.15769 4.20061 4.23142 4.38764 4.48429 4.55633 4.60577 4.66137 4.70700 4.86230 4.90668 4.93591 4.98480 5.01282 5.02352 5.06534 5.13718 5.15316 5.29513 5.34759 5.39384 5.47721 5.62608 5.65091 5.73498 5.78510 6.17564 6.40905 6.69126 7.17007 7.38239 7.87024 8.39605 9.20924 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.031324 B = 0.002000 C = 0.001973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.656693 B =13997.215826 C =14191.353999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.087 4.087 3 C -0.128 4.128 4 C 0.193 3.807 5 N -0.603 5.603 6 C -0.255 4.255 7 H 0.065 0.935 8 C -0.048 4.048 9 N -0.934 5.934 10 Si 0.963 3.037 11 H -0.283 1.283 12 H -0.298 1.298 13 H -0.271 1.271 14 C 0.143 3.857 15 C -0.129 4.129 16 C 0.176 3.824 17 H 0.053 0.947 18 N -0.708 5.708 19 C 0.509 3.491 20 O -0.586 6.586 21 C -0.139 4.139 22 C 0.125 3.875 23 N -1.112 6.112 24 S 2.626 3.374 25 C -0.657 4.657 26 O -0.996 6.996 27 O -1.005 7.005 28 H 0.075 0.925 29 H 0.040 0.960 30 H 0.048 0.952 31 H 0.040 0.960 32 H 0.052 0.948 33 H 0.080 0.920 34 H 0.062 0.938 35 H -0.015 1.015 36 H 0.249 0.751 37 H 0.055 0.945 38 H 0.003 0.997 39 H 0.058 0.942 40 H 0.072 0.928 41 H 0.413 0.587 42 H 0.121 0.879 43 H 0.137 0.863 44 H 0.084 0.916 45 H 0.067 0.933 46 H 0.428 0.572 47 H 0.153 0.847 48 H 0.143 0.857 49 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.173 12.219 22.342 25.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.089 4.089 3 C -0.186 4.186 4 C 0.066 3.934 5 N -0.326 5.326 6 C -0.385 4.385 7 H 0.083 0.917 8 C -0.244 4.244 9 N -0.581 5.581 10 Si 0.792 3.208 11 H -0.209 1.209 12 H -0.225 1.225 13 H -0.196 1.196 14 C 0.017 3.983 15 C -0.169 4.169 16 C 0.070 3.930 17 H 0.072 0.928 18 N -0.360 5.360 19 C 0.297 3.703 20 O -0.466 6.466 21 C -0.180 4.180 22 C -0.001 4.001 23 N -0.873 5.873 24 S 2.722 3.278 25 C -0.810 4.810 26 O -0.987 6.987 27 O -0.995 6.995 28 H 0.094 0.906 29 H 0.060 0.940 30 H 0.067 0.933 31 H 0.060 0.940 32 H 0.071 0.929 33 H 0.099 0.901 34 H 0.080 0.920 35 H 0.003 0.997 36 H 0.058 0.942 37 H 0.073 0.927 38 H 0.021 0.979 39 H 0.076 0.924 40 H 0.091 0.909 41 H 0.251 0.749 42 H 0.139 0.861 43 H 0.154 0.846 44 H 0.102 0.898 45 H 0.086 0.914 46 H 0.264 0.736 47 H 0.171 0.829 48 H 0.162 0.838 49 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 0.186 11.245 22.959 25.566 hybrid contribution -0.173 0.097 -1.745 1.756 sum 0.014 11.343 21.214 24.056 Atomic orbital electron populations 1.21670 0.93335 1.01711 1.01059 1.21319 0.97201 0.95743 0.94618 1.21714 1.00190 0.94293 1.02359 1.20640 0.94114 0.83453 0.95148 1.44279 1.65164 1.06611 1.16535 1.19451 1.17621 1.14867 0.86582 0.91710 1.25725 0.98642 1.01163 0.98821 1.70191 1.29041 1.39981 1.18852 0.85325 0.78883 0.78273 0.78323 1.20928 1.22531 1.19618 1.20966 0.95793 0.94735 0.86837 1.22247 1.01342 0.95858 0.97406 1.20535 0.97581 0.90984 0.83857 0.92832 1.46078 1.30236 1.50338 1.09344 1.21139 0.82913 0.80972 0.85309 1.90723 1.27771 1.42641 1.85497 1.21815 1.01995 1.03885 0.90303 1.21016 0.98288 0.97029 0.83816 1.55263 1.57962 1.51323 1.22755 1.04075 0.78494 0.72953 0.72275 1.30359 1.23069 1.14388 1.13204 1.93574 1.73418 1.68406 1.63266 1.93577 1.86448 1.33490 1.86025 0.90648 0.94038 0.93254 0.94044 0.92915 0.90072 0.91971 0.99718 0.94171 0.92692 0.97896 0.92353 0.90897 0.74889 0.86063 0.84557 0.89826 0.91437 0.73565 0.82897 0.83823 0.84188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.57 7.83 71.98 0.56 -3.01 16 2 C -0.09 -2.84 0.56 -52.10 -0.03 -2.87 16 3 C -0.13 -3.46 8.31 71.98 0.60 -2.86 16 4 C 0.19 8.89 3.99 86.36 0.34 9.23 16 5 N -0.60 -29.49 2.43 -699.12 -1.70 -31.19 16 6 C -0.26 -13.68 9.58 84.03 0.81 -12.87 16 7 H 0.07 3.42 7.89 -2.91 -0.02 3.39 16 8 C -0.05 -2.63 4.91 84.86 0.42 -2.22 16 9 N -0.93 -54.38 11.19 21.65 0.24 -54.14 16 10 Si 0.96 44.10 29.59 68.60 2.03 46.13 16 11 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 12 H -0.30 -13.90 7.11 99.48 0.71 -13.19 16 13 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 14 C 0.14 6.08 6.52 86.36 0.56 6.64 16 15 C -0.13 -4.37 5.31 30.67 0.16 -4.21 16 16 C 0.18 5.46 1.57 45.02 0.07 5.53 16 17 H 0.05 2.00 7.58 -2.39 -0.02 1.98 16 18 N -0.71 -15.07 4.29 -442.40 -1.90 -16.97 16 19 C 0.51 10.91 7.79 87.66 0.68 11.59 16 20 O -0.59 -18.17 15.64 -3.05 -0.05 -18.22 16 21 C -0.14 -1.49 5.84 29.85 0.17 -1.31 16 22 C 0.13 1.59 5.41 86.38 0.47 2.05 16 23 N -1.11 -10.13 5.89 -187.48 -1.10 -11.23 16 24 S 2.63 33.42 6.10 -56.49 -0.34 33.08 16 25 C -0.66 -3.26 10.88 113.37 1.23 -2.02 16 26 O -1.00 -19.07 18.08 -127.65 -2.31 -21.38 16 27 O -1.01 -22.78 17.51 -127.65 -2.24 -25.01 16 28 H 0.07 1.53 6.58 -2.39 -0.02 1.52 16 29 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.05 1.69 5.97 -2.39 -0.01 1.68 16 31 H 0.04 1.19 8.14 -2.39 -0.02 1.18 16 32 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.08 1.58 7.36 -2.39 -0.02 1.56 16 34 H 0.06 3.25 6.04 -2.39 -0.01 3.24 16 35 H -0.02 -0.79 8.14 -2.39 -0.02 -0.81 16 36 H 0.25 14.09 8.31 -92.71 -0.77 13.32 16 37 H 0.05 2.29 7.93 -2.39 -0.02 2.27 16 38 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 39 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 40 H 0.07 2.37 6.33 -2.39 -0.02 2.35 16 41 H 0.41 6.10 6.66 -92.70 -0.62 5.48 16 42 H 0.12 0.91 8.14 -2.38 -0.02 0.89 16 43 H 0.14 0.53 8.14 -2.39 -0.02 0.51 16 44 H 0.08 0.90 8.10 -2.38 -0.02 0.88 16 45 H 0.07 1.20 7.66 -2.39 -0.02 1.19 16 46 H 0.43 2.04 8.62 -96.75 -0.83 1.20 16 47 H 0.15 0.14 8.14 -2.39 -0.02 0.12 16 48 H 0.14 0.39 8.14 -2.39 -0.02 0.37 16 49 H 0.14 0.57 8.14 -2.39 -0.02 0.55 16 Total: -1.00 -82.08 395.13 -1.80 -83.88 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -0.49 Total: 11.36 kcal Atomic # 6 Polarization: -2.37 SS G_CDS: 6.05 Total: 3.69 kcal Atomic # 7 Polarization: -109.07 SS G_CDS: -4.46 Total: -113.52 kcal Atomic # 8 Polarization: -60.02 SS G_CDS: -4.59 Total: -64.61 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Atomic # 16 Polarization: 33.42 SS G_CDS: -0.34 Total: 33.08 kcal Total: -82.08 -1.80 -83.88 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700292549.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.908 kcal (2) G-P(sol) polarization free energy of solvation -82.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds