Wall clock time and date at job start Wed Apr 1 2020 04:44:58
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 C 1.52997 * 109.52527 * 2 1
4 4 C 1.53190 * 109.49938 * 239.91553 * 2 1 3
5 5 N 1.46925 * 108.77872 * 294.68698 * 4 2 1
6 6 C 1.36935 * 120.63123 * 126.41196 * 5 4 2
7 7 H 1.08000 * 119.99635 * 207.68017 * 6 5 4
8 8 C 1.38808 * 120.00357 * 27.67664 * 6 5 4
9 9 N 1.31625 * 119.99512 * 17.35416 * 8 6 5
10 10 Si 1.86797 * 120.00236 * 197.35705 * 8 6 5
11 11 H 1.48499 * 109.47340 * 90.00086 * 10 8 6
12 12 H 1.48500 * 109.46884 * 209.99942 * 10 8 6
13 13 H 1.48499 * 109.47207 * 329.99754 * 10 8 6
14 14 C 1.46928 * 118.73637 * 306.39000 * 5 4 2
15 15 C 1.53193 * 108.76495 * 53.61722 * 14 5 4
16 16 C 1.53042 * 109.49373 * 120.07810 * 2 1 3
17 17 H 1.09004 * 109.45759 * 178.59415 * 16 2 1
18 18 N 1.46500 * 109.46441 * 298.56508 * 16 2 1
19 19 C 1.34770 * 120.00300 * 205.03107 * 18 16 2
20 20 O 1.21286 * 120.00229 * 359.97438 * 19 18 16
21 21 C 1.50698 * 120.00134 * 180.02562 * 19 18 16
22 22 C 1.52999 * 109.47106 * 179.97438 * 21 19 18
23 23 N 1.46505 * 109.46989 * 179.97438 * 22 21 19
24 24 S 1.65597 * 119.99957 * 165.27654 * 23 22 21
25 25 C 1.81396 * 104.45197 * 64.72603 * 24 23 22
26 26 O 1.42107 * 104.27926 * 180.79951 * 24 23 22
27 27 O 1.42106 * 104.27948 * 308.65595 * 24 23 22
28 28 H 1.08995 * 109.47249 * 299.92459 * 1 2 3
29 29 H 1.08997 * 109.46620 * 59.92058 * 1 2 3
30 30 H 1.08991 * 109.47246 * 179.91729 * 1 2 3
31 31 H 1.08996 * 109.47424 * 180.02562 * 3 2 1
32 32 H 1.08998 * 109.47328 * 300.08183 * 3 2 1
33 33 H 1.08999 * 109.47470 * 60.07818 * 3 2 1
34 34 H 1.08997 * 109.58500 * 54.47245 * 4 2 1
35 35 H 1.09001 * 109.58346 * 174.89518 * 4 2 1
36 36 H 0.97004 * 119.99733 * 180.02562 * 9 8 6
37 37 H 1.08999 * 109.58794 * 173.39361 * 14 5 4
38 38 H 1.08993 * 109.58957 * 293.82165 * 14 5 4
39 39 H 1.08999 * 109.48990 * 185.40038 * 15 14 5
40 40 H 1.09003 * 109.51328 * 65.30155 * 15 14 5
41 41 H 0.97005 * 119.99350 * 25.02603 * 18 16 2
42 42 H 1.09004 * 109.46974 * 59.99688 * 21 19 18
43 43 H 1.09001 * 109.47340 * 300.00019 * 21 19 18
44 44 H 1.09004 * 109.47085 * 60.00213 * 22 21 19
45 45 H 1.08998 * 109.47463 * 299.99485 * 22 21 19
46 46 H 0.97002 * 120.00141 * 345.00783 * 23 22 21
47 47 H 1.09003 * 109.47288 * 59.99792 * 25 24 23
48 48 H 1.08994 * 109.47785 * 180.02562 * 25 24 23
49 49 H 1.09003 * 109.47436 * 300.00186 * 25 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0414 1.4420 0.0000
4 6 2.0414 -0.7239 -1.2495
5 7 1.6516 -2.1382 -1.1695
6 6 0.9640 -2.7314 -2.1944
7 1 0.3081 -3.5655 -1.9930
8 6 1.1100 -2.2609 -3.4921
9 7 2.1348 -1.4957 -3.8032
10 14 -0.1479 -2.7135 -4.7968
11 1 -1.2302 -1.6968 -4.8148
12 1 0.5120 -2.7574 -6.1264
13 1 -0.7254 -4.0459 -4.4866
14 6 2.0140 -2.9040 0.0309
15 6 1.5027 -2.1557 1.2659
16 6 2.0407 -0.7230 1.2484
17 1 3.1305 -0.7446 1.2353
18 7 1.5810 -0.0144 2.4454
19 6 2.2700 -0.1222 3.5986
20 8 3.2703 -0.8063 3.6458
21 6 1.7967 0.6063 4.8300
22 6 2.7492 0.3165 5.9917
23 7 2.2895 1.0252 7.1886
24 16 2.8976 0.6211 8.6750
25 6 4.6567 1.0529 8.5771
26 8 2.2213 1.4859 9.5773
27 8 2.7335 -0.7885 8.7493
28 1 -0.3633 0.5126 0.8906
29 1 -0.3632 0.5151 -0.8893
30 1 -0.3633 -1.0276 -0.0015
31 1 3.1313 1.4410 -0.0005
32 1 1.6774 1.9566 -0.8892
33 1 1.6797 1.9558 0.8907
34 1 1.6008 -0.2732 -2.1388
35 1 3.1275 -0.6463 -1.2979
36 1 2.2367 -1.1666 -4.7100
37 1 1.5554 -3.8919 -0.0136
38 1 3.0979 -3.0043 0.0869
39 1 1.8475 -2.6628 2.1670
40 1 0.4129 -2.1351 1.2539
41 1 0.7808 0.5326 2.4077
42 1 0.7938 0.2675 5.0897
43 1 1.7785 1.6783 4.6334
44 1 3.7523 0.6551 5.7322
45 1 2.7670 -0.7555 6.1882
46 1 1.6318 1.7339 7.1101
47 1 4.7584 2.1186 8.3718
48 1 5.1421 0.8169 9.5240
49 1 5.1269 0.4822 7.7762
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001700292549.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:44:58
Heat of formation + Delta-G solvation = -122.787330 kcal
Electronic energy + Delta-G solvation = -29582.414117 eV
Core-core repulsion = 25477.853736 eV
Total energy + Delta-G solvation = -4104.560381 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 347.171 amu
Computer time = 0.97 seconds
Orbital eigenvalues (eV)
-41.32245 -39.62173 -38.15276 -37.02294 -36.63033 -36.15927 -34.22126 -33.82085
-31.75072 -30.58705 -30.23395 -28.10534 -27.58099 -26.85927 -24.84223 -23.46179
-22.27066 -21.29780 -20.47899 -19.63134 -18.93085 -18.49639 -17.88865 -17.32115
-17.01233 -16.94147 -16.74484 -16.49128 -15.72553 -15.61089 -15.36083 -15.22880
-15.00143 -14.78786 -14.60139 -14.21082 -13.97257 -13.94141 -13.79497 -13.29047
-13.24609 -13.18911 -13.06647 -13.02472 -12.85901 -12.73255 -12.62947 -12.60836
-12.51667 -12.37781 -12.29064 -11.93814 -11.90163 -11.80431 -11.59930 -11.28184
-11.14750 -10.76515 -10.51882 -10.39534 -9.88644 -8.66692 -7.85457 -5.29985
-0.64599 1.47995 1.49270 1.57747 1.73066 1.75293 2.36674 2.52483
2.90895 3.29302 3.31223 3.64815 3.69583 3.78430 3.99874 4.05673
4.08249 4.15769 4.20061 4.23142 4.38764 4.48429 4.55633 4.60577
4.66137 4.70700 4.86230 4.90668 4.93591 4.98480 5.01282 5.02352
5.06534 5.13718 5.15316 5.29513 5.34759 5.39384 5.47721 5.62608
5.65091 5.73498 5.78510 6.17564 6.40905 6.69126 7.17007 7.38239
7.87024 8.39605 9.20924
Molecular weight = 347.17amu
Principal moments of inertia in cm(-1)
A = 0.031324 B = 0.002000 C = 0.001973
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 893.656693 B =13997.215826 C =14191.353999
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.121 4.121
2 C -0.087 4.087
3 C -0.128 4.128
4 C 0.193 3.807
5 N -0.603 5.603
6 C -0.255 4.255
7 H 0.065 0.935
8 C -0.048 4.048
9 N -0.934 5.934
10 Si 0.963 3.037
11 H -0.283 1.283
12 H -0.298 1.298
13 H -0.271 1.271
14 C 0.143 3.857
15 C -0.129 4.129
16 C 0.176 3.824
17 H 0.053 0.947
18 N -0.708 5.708
19 C 0.509 3.491
20 O -0.586 6.586
21 C -0.139 4.139
22 C 0.125 3.875
23 N -1.112 6.112
24 S 2.626 3.374
25 C -0.657 4.657
26 O -0.996 6.996
27 O -1.005 7.005
28 H 0.075 0.925
29 H 0.040 0.960
30 H 0.048 0.952
31 H 0.040 0.960
32 H 0.052 0.948
33 H 0.080 0.920
34 H 0.062 0.938
35 H -0.015 1.015
36 H 0.249 0.751
37 H 0.055 0.945
38 H 0.003 0.997
39 H 0.058 0.942
40 H 0.072 0.928
41 H 0.413 0.587
42 H 0.121 0.879
43 H 0.137 0.863
44 H 0.084 0.916
45 H 0.067 0.933
46 H 0.428 0.572
47 H 0.153 0.847
48 H 0.143 0.857
49 H 0.140 0.860
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.173 12.219 22.342 25.465
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.178 4.178
2 C -0.089 4.089
3 C -0.186 4.186
4 C 0.066 3.934
5 N -0.326 5.326
6 C -0.385 4.385
7 H 0.083 0.917
8 C -0.244 4.244
9 N -0.581 5.581
10 Si 0.792 3.208
11 H -0.209 1.209
12 H -0.225 1.225
13 H -0.196 1.196
14 C 0.017 3.983
15 C -0.169 4.169
16 C 0.070 3.930
17 H 0.072 0.928
18 N -0.360 5.360
19 C 0.297 3.703
20 O -0.466 6.466
21 C -0.180 4.180
22 C -0.001 4.001
23 N -0.873 5.873
24 S 2.722 3.278
25 C -0.810 4.810
26 O -0.987 6.987
27 O -0.995 6.995
28 H 0.094 0.906
29 H 0.060 0.940
30 H 0.067 0.933
31 H 0.060 0.940
32 H 0.071 0.929
33 H 0.099 0.901
34 H 0.080 0.920
35 H 0.003 0.997
36 H 0.058 0.942
37 H 0.073 0.927
38 H 0.021 0.979
39 H 0.076 0.924
40 H 0.091 0.909
41 H 0.251 0.749
42 H 0.139 0.861
43 H 0.154 0.846
44 H 0.102 0.898
45 H 0.086 0.914
46 H 0.264 0.736
47 H 0.171 0.829
48 H 0.162 0.838
49 H 0.158 0.842
Dipole moment (debyes) X Y Z Total
from point charges 0.186 11.245 22.959 25.566
hybrid contribution -0.173 0.097 -1.745 1.756
sum 0.014 11.343 21.214 24.056
Atomic orbital electron populations
1.21670 0.93335 1.01711 1.01059 1.21319 0.97201 0.95743 0.94618
1.21714 1.00190 0.94293 1.02359 1.20640 0.94114 0.83453 0.95148
1.44279 1.65164 1.06611 1.16535 1.19451 1.17621 1.14867 0.86582
0.91710 1.25725 0.98642 1.01163 0.98821 1.70191 1.29041 1.39981
1.18852 0.85325 0.78883 0.78273 0.78323 1.20928 1.22531 1.19618
1.20966 0.95793 0.94735 0.86837 1.22247 1.01342 0.95858 0.97406
1.20535 0.97581 0.90984 0.83857 0.92832 1.46078 1.30236 1.50338
1.09344 1.21139 0.82913 0.80972 0.85309 1.90723 1.27771 1.42641
1.85497 1.21815 1.01995 1.03885 0.90303 1.21016 0.98288 0.97029
0.83816 1.55263 1.57962 1.51323 1.22755 1.04075 0.78494 0.72953
0.72275 1.30359 1.23069 1.14388 1.13204 1.93574 1.73418 1.68406
1.63266 1.93577 1.86448 1.33490 1.86025 0.90648 0.94038 0.93254
0.94044 0.92915 0.90072 0.91971 0.99718 0.94171 0.92692 0.97896
0.92353 0.90897 0.74889 0.86063 0.84557 0.89826 0.91437 0.73565
0.82897 0.83823 0.84188
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -3.57 7.83 71.98 0.56 -3.01 16
2 C -0.09 -2.84 0.56 -52.10 -0.03 -2.87 16
3 C -0.13 -3.46 8.31 71.98 0.60 -2.86 16
4 C 0.19 8.89 3.99 86.36 0.34 9.23 16
5 N -0.60 -29.49 2.43 -699.12 -1.70 -31.19 16
6 C -0.26 -13.68 9.58 84.03 0.81 -12.87 16
7 H 0.07 3.42 7.89 -2.91 -0.02 3.39 16
8 C -0.05 -2.63 4.91 84.86 0.42 -2.22 16
9 N -0.93 -54.38 11.19 21.65 0.24 -54.14 16
10 Si 0.96 44.10 29.59 68.60 2.03 46.13 16
11 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16
12 H -0.30 -13.90 7.11 99.48 0.71 -13.19 16
13 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16
14 C 0.14 6.08 6.52 86.36 0.56 6.64 16
15 C -0.13 -4.37 5.31 30.67 0.16 -4.21 16
16 C 0.18 5.46 1.57 45.02 0.07 5.53 16
17 H 0.05 2.00 7.58 -2.39 -0.02 1.98 16
18 N -0.71 -15.07 4.29 -442.40 -1.90 -16.97 16
19 C 0.51 10.91 7.79 87.66 0.68 11.59 16
20 O -0.59 -18.17 15.64 -3.05 -0.05 -18.22 16
21 C -0.14 -1.49 5.84 29.85 0.17 -1.31 16
22 C 0.13 1.59 5.41 86.38 0.47 2.05 16
23 N -1.11 -10.13 5.89 -187.48 -1.10 -11.23 16
24 S 2.63 33.42 6.10 -56.49 -0.34 33.08 16
25 C -0.66 -3.26 10.88 113.37 1.23 -2.02 16
26 O -1.00 -19.07 18.08 -127.65 -2.31 -21.38 16
27 O -1.01 -22.78 17.51 -127.65 -2.24 -25.01 16
28 H 0.07 1.53 6.58 -2.39 -0.02 1.52 16
29 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16
30 H 0.05 1.69 5.97 -2.39 -0.01 1.68 16
31 H 0.04 1.19 8.14 -2.39 -0.02 1.18 16
32 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16
33 H 0.08 1.58 7.36 -2.39 -0.02 1.56 16
34 H 0.06 3.25 6.04 -2.39 -0.01 3.24 16
35 H -0.02 -0.79 8.14 -2.39 -0.02 -0.81 16
36 H 0.25 14.09 8.31 -92.71 -0.77 13.32 16
37 H 0.05 2.29 7.93 -2.39 -0.02 2.27 16
38 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16
39 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16
40 H 0.07 2.37 6.33 -2.39 -0.02 2.35 16
41 H 0.41 6.10 6.66 -92.70 -0.62 5.48 16
42 H 0.12 0.91 8.14 -2.38 -0.02 0.89 16
43 H 0.14 0.53 8.14 -2.39 -0.02 0.51 16
44 H 0.08 0.90 8.10 -2.38 -0.02 0.88 16
45 H 0.07 1.20 7.66 -2.39 -0.02 1.19 16
46 H 0.43 2.04 8.62 -96.75 -0.83 1.20 16
47 H 0.15 0.14 8.14 -2.39 -0.02 0.12 16
48 H 0.14 0.39 8.14 -2.39 -0.02 0.37 16
49 H 0.14 0.57 8.14 -2.39 -0.02 0.55 16
Total: -1.00 -82.08 395.13 -1.80 -83.88
By element:
Atomic # 1 Polarization: 11.85 SS G_CDS: -0.49 Total: 11.36 kcal
Atomic # 6 Polarization: -2.37 SS G_CDS: 6.05 Total: 3.69 kcal
Atomic # 7 Polarization: -109.07 SS G_CDS: -4.46 Total: -113.52 kcal
Atomic # 8 Polarization: -60.02 SS G_CDS: -4.59 Total: -64.61 kcal
Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal
Atomic # 16 Polarization: 33.42 SS G_CDS: -0.34 Total: 33.08 kcal
Total: -82.08 -1.80 -83.88 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001700292549.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -38.908 kcal
(2) G-P(sol) polarization free energy of solvation -82.080 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.988 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.800 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.879 kcal
(6) G-S(sol) free energy of system = (1) + (5) -122.787 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.97 seconds