Wall clock time and date at job start Wed Apr 1 2020 04:54:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47212 * 2 1 4 4 C 1.52998 * 109.47423 * 120.00357 * 2 1 3 5 5 H 1.08997 * 109.47755 * 184.99718 * 4 2 1 6 6 C 1.53007 * 109.46992 * 305.00036 * 4 2 1 7 7 C 1.52995 * 109.47180 * 184.99600 * 6 4 2 8 8 N 1.46496 * 109.47360 * 179.97438 * 7 6 4 9 9 C 1.46507 * 119.99997 * 270.00380 * 8 7 6 10 10 C 1.34775 * 120.00213 * 89.99766 * 8 7 6 11 11 O 1.21281 * 119.99816 * 0.02562 * 10 8 7 12 12 C 1.50698 * 120.00181 * 180.02562 * 10 8 7 13 13 H 1.09000 * 108.58392 * 316.54328 * 12 10 8 14 14 C 1.53200 * 108.64641 * 74.37848 * 12 10 8 15 15 C 1.55560 * 106.23809 * 148.65848 * 14 12 10 16 16 S 1.83897 * 99.64496 * 323.00975 * 15 14 12 17 17 O 1.42103 * 111.46874 * 284.14459 * 16 15 14 18 18 O 1.42102 * 111.46638 * 144.08497 * 16 15 14 19 19 N 1.46450 * 108.64438 * 198.54970 * 12 10 8 20 20 N 1.46504 * 109.47187 * 64.99491 * 4 2 1 21 21 C 1.36940 * 119.99615 * 85.00151 * 20 4 2 22 22 H 1.07999 * 120.00311 * 0.02562 * 21 20 4 23 23 C 1.38812 * 119.99727 * 180.02562 * 21 20 4 24 24 N 1.31623 * 120.00082 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 119.99814 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47053 * 60.00098 * 25 23 21 27 27 H 1.48500 * 109.46947 * 180.02562 * 25 23 21 28 28 H 1.48504 * 109.47190 * 299.99949 * 25 23 21 29 29 H 1.09001 * 109.46883 * 300.00137 * 1 2 3 30 30 H 1.09000 * 109.47027 * 59.99388 * 1 2 3 31 31 H 1.08996 * 109.46947 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47156 * 240.00326 * 2 1 3 33 33 H 1.09009 * 109.47208 * 60.00432 * 3 2 1 34 34 H 1.09000 * 109.47357 * 179.97438 * 3 2 1 35 35 H 1.09000 * 109.47624 * 300.00246 * 3 2 1 36 36 H 1.09004 * 109.47072 * 64.99401 * 6 4 2 37 37 H 1.08997 * 109.47068 * 304.99893 * 6 4 2 38 38 H 1.09003 * 109.46842 * 59.99628 * 7 6 4 39 39 H 1.08997 * 109.47359 * 300.00115 * 7 6 4 40 40 H 1.08995 * 109.46768 * 269.99166 * 9 8 7 41 41 H 1.08997 * 109.46967 * 29.99641 * 9 8 7 42 42 H 1.09006 * 109.46762 * 149.99601 * 9 8 7 43 43 H 1.08995 * 110.09880 * 267.85117 * 14 12 10 44 44 H 1.08995 * 110.09917 * 29.46780 * 14 12 10 45 45 H 1.09001 * 111.37053 * 205.40801 * 15 14 12 46 46 H 1.09007 * 111.36807 * 80.61641 * 15 14 12 47 47 H 0.97004 * 126.08761 * 57.13368 * 19 12 10 48 48 H 0.97000 * 120.00109 * 265.00826 * 20 4 2 49 49 H 0.97002 * 119.99777 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 3.1264 -0.6445 1.2951 6 6 1.4300 -0.0763 2.4953 7 6 2.0343 -0.7145 3.7477 8 7 1.4507 -0.0966 4.9408 9 6 2.0806 1.0843 5.5368 10 6 0.3342 -0.6143 5.4902 11 8 -0.1871 -1.5920 4.9971 12 6 -0.2665 0.0217 6.7173 13 1 0.5376 0.2635 7.4122 14 6 -0.9604 1.3236 6.3044 15 6 -2.1597 1.5052 7.2783 16 16 -2.6795 -0.2497 7.4575 17 8 -3.3812 -0.7042 6.3084 18 8 -3.1335 -0.5256 8.7755 19 7 -1.1617 -0.9458 7.3555 20 7 1.6524 -2.1329 1.1905 21 6 2.4346 -3.0301 0.5133 22 1 3.3373 -2.6971 0.0228 23 6 2.0670 -4.3675 0.4572 24 7 0.9665 -4.7732 1.0545 25 14 3.1343 -5.5914 -0.4660 26 1 4.4916 -5.6173 0.1359 27 1 2.5269 -6.9436 -0.3769 28 1 3.2324 -5.1863 -1.8913 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.6767 1.9563 0.8901 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9564 -0.8899 36 1 0.3510 -0.2310 2.4933 37 1 1.6437 0.9925 2.4929 38 1 3.1133 -0.5598 3.7496 39 1 1.8206 -1.7833 3.7501 40 1 2.8121 0.7692 6.2809 41 1 2.5795 1.6617 4.7585 42 1 1.3187 1.7004 6.0144 43 1 -0.2706 2.1621 6.3992 44 1 -1.3195 1.2474 5.2781 45 1 -2.9482 2.1090 6.8292 46 1 -1.8371 1.9232 8.2319 47 1 -0.9181 -1.8328 7.6638 48 1 0.8418 -2.4320 1.6312 49 1 0.7099 -5.7078 1.0157 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700507635.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:54:23 Heat of formation + Delta-G solvation = -82.608884 kcal Electronic energy + Delta-G solvation = -30342.729410 eV Core-core repulsion = 26239.911297 eV Total energy + Delta-G solvation = -4102.818113 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 2.20 seconds Orbital eigenvalues (eV) -40.34824 -37.68340 -37.25947 -36.55375 -36.03616 -35.50150 -33.09921 -32.14810 -31.28845 -29.69417 -27.51688 -26.90019 -26.59805 -24.87321 -23.21068 -22.59675 -21.89328 -19.87487 -19.36728 -18.34942 -17.95352 -17.75633 -17.09989 -16.71410 -16.05281 -15.93970 -15.41684 -14.91086 -14.73517 -14.55682 -14.18195 -14.10657 -13.87383 -13.58259 -13.35148 -13.21272 -13.00197 -12.90107 -12.57520 -12.41522 -12.28218 -12.21462 -12.15426 -12.03785 -11.79230 -11.71470 -11.46378 -11.10966 -10.90590 -10.85593 -10.80664 -10.46203 -10.34268 -10.33569 -10.17612 -10.08627 -9.67639 -9.50209 -9.26930 -8.82282 -8.50591 -6.83729 -5.65043 -2.94465 -0.03516 2.24151 2.59527 3.02081 3.29340 3.48496 3.50697 3.52992 3.54780 3.86012 4.07532 4.25588 4.50063 4.66642 4.75396 4.78267 4.95236 5.02832 5.12701 5.19967 5.35646 5.39736 5.43797 5.48338 5.52389 5.66865 5.73693 5.80299 5.92916 5.95931 6.12550 6.23273 6.33265 6.34545 6.43196 6.46331 6.65547 6.73803 6.83092 6.85485 6.93108 7.11672 7.17049 7.43166 7.77670 8.25164 8.52202 9.63339 10.22881 10.57479 11.56450 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.012280 B = 0.003102 C = 0.002788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2279.604252 B = 9023.341191 C =10039.184622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.115 4.115 3 C -0.143 4.143 4 C 0.186 3.814 5 H 0.044 0.956 6 C -0.137 4.137 7 C 0.117 3.883 8 N -0.615 5.615 9 C 0.068 3.932 10 C 0.491 3.509 11 O -0.494 6.494 12 C 0.098 3.902 13 H 0.105 0.895 14 C -0.121 4.121 15 C -0.592 4.592 16 S 2.570 3.430 17 O -0.936 6.936 18 O -0.959 6.959 19 N -1.076 6.076 20 N -0.720 5.720 21 C -0.240 4.240 22 H 0.067 0.933 23 C -0.010 4.010 24 N -0.926 5.926 25 Si 0.902 3.098 26 H -0.288 1.288 27 H -0.292 1.292 28 H -0.288 1.288 29 H 0.043 0.957 30 H 0.035 0.965 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.048 0.952 34 H 0.047 0.953 35 H 0.042 0.958 36 H 0.067 0.933 37 H 0.058 0.942 38 H 0.071 0.929 39 H 0.100 0.900 40 H 0.056 0.944 41 H 0.075 0.925 42 H 0.069 0.931 43 H 0.121 0.879 44 H 0.104 0.896 45 H 0.145 0.855 46 H 0.144 0.856 47 H 0.440 0.560 48 H 0.387 0.613 49 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.587 20.580 14.571 25.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.137 4.137 3 C -0.201 4.201 4 C 0.075 3.925 5 H 0.062 0.938 6 C -0.176 4.176 7 C -0.004 4.004 8 N -0.351 5.351 9 C -0.075 4.075 10 C 0.274 3.726 11 O -0.365 6.365 12 C -0.015 4.015 13 H 0.123 0.877 14 C -0.161 4.161 15 C -0.722 4.722 16 S 2.663 3.337 17 O -0.925 6.925 18 O -0.949 6.949 19 N -0.841 5.841 20 N -0.361 5.361 21 C -0.372 4.372 22 H 0.085 0.915 23 C -0.207 4.207 24 N -0.574 5.574 25 Si 0.733 3.267 26 H -0.214 1.214 27 H -0.218 1.218 28 H -0.215 1.215 29 H 0.062 0.938 30 H 0.054 0.946 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.061 0.939 36 H 0.086 0.914 37 H 0.076 0.924 38 H 0.089 0.911 39 H 0.119 0.881 40 H 0.075 0.925 41 H 0.094 0.906 42 H 0.088 0.912 43 H 0.139 0.861 44 H 0.123 0.877 45 H 0.163 0.837 46 H 0.163 0.837 47 H 0.281 0.719 48 H 0.221 0.779 49 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -1.697 19.500 14.337 24.262 hybrid contribution 1.134 -0.621 -0.490 1.382 sum -0.563 18.878 13.847 23.419 Atomic orbital electron populations 1.21729 0.95994 1.02292 0.99382 1.21796 0.95923 0.94378 1.01572 1.21883 1.00282 0.97497 1.00472 1.20154 0.96344 0.85644 0.90321 0.93788 1.22251 1.01637 0.98779 0.94959 1.21637 0.96481 1.00154 0.82146 1.47996 1.27008 1.30233 1.29815 1.21960 0.98392 0.87927 0.99227 1.20791 0.81233 0.85217 0.85391 1.90877 1.59401 1.24898 1.61364 1.21146 0.95951 0.89242 0.95162 0.87677 1.22457 0.96839 0.96054 1.00708 1.30801 1.08353 1.24331 1.08753 1.06513 0.73650 0.78589 0.74914 1.93721 1.70774 1.77106 1.50879 1.93618 1.79628 1.83077 1.38536 1.54709 1.28008 1.25906 1.75495 1.42481 1.28839 1.01285 1.63500 1.19138 1.03539 0.88693 1.25792 0.91481 1.24723 0.97709 0.97139 1.01126 1.69676 1.24376 1.15575 1.47782 0.86360 0.79666 0.81026 0.79630 1.21449 1.21832 1.21458 0.93787 0.94630 0.91648 0.91306 0.93299 0.93431 0.93897 0.91409 0.92386 0.91066 0.88145 0.92546 0.90576 0.91249 0.86066 0.87743 0.83710 0.83729 0.71906 0.77857 0.93521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 8.59 37.16 0.32 -2.08 16 2 C -0.12 -2.02 2.88 -90.62 -0.26 -2.28 16 3 C -0.14 -1.96 8.95 37.15 0.33 -1.62 16 4 C 0.19 3.53 2.06 -67.93 -0.14 3.39 16 5 H 0.04 0.84 8.08 -51.93 -0.42 0.42 16 6 C -0.14 -2.17 4.28 -26.73 -0.11 -2.28 16 7 C 0.12 1.82 5.29 -4.05 -0.02 1.80 16 8 N -0.62 -7.35 2.87 -181.57 -0.52 -7.87 16 9 C 0.07 0.45 9.89 59.85 0.59 1.04 16 10 C 0.49 6.76 6.71 -10.99 -0.07 6.68 16 11 O -0.49 -9.79 16.07 5.56 0.09 -9.71 16 12 C 0.10 0.86 2.82 -69.01 -0.19 0.66 16 13 H 0.11 0.56 7.36 -51.93 -0.38 0.18 16 14 C -0.12 -0.71 5.42 -25.27 -0.14 -0.85 16 15 C -0.59 -2.83 7.65 38.52 0.29 -2.54 16 16 S 2.57 26.26 6.47 -107.50 -0.70 25.57 16 17 O -0.94 -14.38 18.14 -57.37 -1.04 -15.42 16 18 O -0.96 -12.22 18.14 -57.37 -1.04 -13.26 16 19 N -1.08 -11.03 6.11 -5.82 -0.04 -11.06 16 20 N -0.72 -17.71 4.03 -53.42 -0.22 -17.92 16 21 C -0.24 -6.60 9.93 -15.06 -0.15 -6.75 16 22 H 0.07 1.79 7.83 -52.49 -0.41 1.37 16 23 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 24 N -0.93 -28.74 13.06 55.49 0.72 -28.02 16 25 Si 0.90 22.71 29.55 -169.99 -5.02 17.68 16 26 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 27 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 28 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 29 H 0.04 0.71 6.46 -51.93 -0.34 0.38 16 30 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 1.37 7.75 -51.93 -0.40 0.97 16 32 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 33 H 0.05 0.60 6.46 -51.92 -0.34 0.26 16 34 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.07 1.22 6.65 -51.93 -0.35 0.88 16 37 H 0.06 0.75 6.34 -51.93 -0.33 0.42 16 38 H 0.07 0.99 8.07 -51.93 -0.42 0.57 16 39 H 0.10 2.06 7.03 -51.93 -0.37 1.70 16 40 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.08 0.45 8.07 -51.93 -0.42 0.03 16 42 H 0.07 0.25 4.42 -51.93 -0.23 0.02 16 43 H 0.12 0.28 6.30 -51.93 -0.33 -0.05 16 44 H 0.10 0.77 7.82 -51.93 -0.41 0.37 16 45 H 0.14 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.14 0.32 8.14 -51.93 -0.42 -0.10 16 47 H 0.44 4.41 8.96 -40.36 -0.36 4.05 16 48 H 0.39 10.61 7.80 -40.82 -0.32 10.29 16 49 H 0.25 7.74 8.31 -40.82 -0.34 7.41 16 LS Contribution 396.47 15.07 5.97 5.97 Total: -1.00 -39.98 396.47 -9.33 -49.32 By element: Atomic # 1 Polarization: 17.85 SS G_CDS: -7.90 Total: 9.95 kcal Atomic # 6 Polarization: -5.58 SS G_CDS: 0.35 Total: -5.23 kcal Atomic # 7 Polarization: -64.82 SS G_CDS: -0.05 Total: -64.87 kcal Atomic # 8 Polarization: -36.39 SS G_CDS: -1.99 Total: -38.39 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -5.02 Total: 17.68 kcal Atomic # 16 Polarization: 26.26 SS G_CDS: -0.70 Total: 25.57 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -39.98 -9.33 -49.32 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700507635.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.294 kcal (2) G-P(sol) polarization free energy of solvation -39.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.20 seconds