Wall clock time and date at job start Wed Apr 1 2020 04:54:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47212 * 2 1 4 4 C 1.52998 * 109.47423 * 120.00357 * 2 1 3 5 5 H 1.08997 * 109.47755 * 184.99718 * 4 2 1 6 6 C 1.53007 * 109.46992 * 305.00036 * 4 2 1 7 7 C 1.52995 * 109.47180 * 184.99600 * 6 4 2 8 8 N 1.46496 * 109.47360 * 179.97438 * 7 6 4 9 9 C 1.46507 * 119.99997 * 270.00380 * 8 7 6 10 10 C 1.34775 * 120.00213 * 89.99766 * 8 7 6 11 11 O 1.21281 * 119.99816 * 0.02562 * 10 8 7 12 12 C 1.50698 * 120.00181 * 180.02562 * 10 8 7 13 13 H 1.09000 * 108.58392 * 316.54328 * 12 10 8 14 14 C 1.53200 * 108.64641 * 74.37848 * 12 10 8 15 15 C 1.55560 * 106.23809 * 148.65848 * 14 12 10 16 16 S 1.83897 * 99.64496 * 323.00975 * 15 14 12 17 17 O 1.42103 * 111.46874 * 284.14459 * 16 15 14 18 18 O 1.42102 * 111.46638 * 144.08497 * 16 15 14 19 19 N 1.46450 * 108.64438 * 198.54970 * 12 10 8 20 20 N 1.46504 * 109.47187 * 64.99491 * 4 2 1 21 21 C 1.36940 * 119.99615 * 85.00151 * 20 4 2 22 22 H 1.07999 * 120.00311 * 0.02562 * 21 20 4 23 23 C 1.38812 * 119.99727 * 180.02562 * 21 20 4 24 24 N 1.31623 * 120.00082 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 119.99814 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47053 * 60.00098 * 25 23 21 27 27 H 1.48500 * 109.46947 * 180.02562 * 25 23 21 28 28 H 1.48504 * 109.47190 * 299.99949 * 25 23 21 29 29 H 1.09001 * 109.46883 * 300.00137 * 1 2 3 30 30 H 1.09000 * 109.47027 * 59.99388 * 1 2 3 31 31 H 1.08996 * 109.46947 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47156 * 240.00326 * 2 1 3 33 33 H 1.09009 * 109.47208 * 60.00432 * 3 2 1 34 34 H 1.09000 * 109.47357 * 179.97438 * 3 2 1 35 35 H 1.09000 * 109.47624 * 300.00246 * 3 2 1 36 36 H 1.09004 * 109.47072 * 64.99401 * 6 4 2 37 37 H 1.08997 * 109.47068 * 304.99893 * 6 4 2 38 38 H 1.09003 * 109.46842 * 59.99628 * 7 6 4 39 39 H 1.08997 * 109.47359 * 300.00115 * 7 6 4 40 40 H 1.08995 * 109.46768 * 269.99166 * 9 8 7 41 41 H 1.08997 * 109.46967 * 29.99641 * 9 8 7 42 42 H 1.09006 * 109.46762 * 149.99601 * 9 8 7 43 43 H 1.08995 * 110.09880 * 267.85117 * 14 12 10 44 44 H 1.08995 * 110.09917 * 29.46780 * 14 12 10 45 45 H 1.09001 * 111.37053 * 205.40801 * 15 14 12 46 46 H 1.09007 * 111.36807 * 80.61641 * 15 14 12 47 47 H 0.97004 * 126.08761 * 57.13368 * 19 12 10 48 48 H 0.97000 * 120.00109 * 265.00826 * 20 4 2 49 49 H 0.97002 * 119.99777 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 3.1264 -0.6445 1.2951 6 6 1.4300 -0.0763 2.4953 7 6 2.0343 -0.7145 3.7477 8 7 1.4507 -0.0966 4.9408 9 6 2.0806 1.0843 5.5368 10 6 0.3342 -0.6143 5.4902 11 8 -0.1871 -1.5920 4.9971 12 6 -0.2665 0.0217 6.7173 13 1 0.5376 0.2635 7.4122 14 6 -0.9604 1.3236 6.3044 15 6 -2.1597 1.5052 7.2783 16 16 -2.6795 -0.2497 7.4575 17 8 -3.3812 -0.7042 6.3084 18 8 -3.1335 -0.5256 8.7755 19 7 -1.1617 -0.9458 7.3555 20 7 1.6524 -2.1329 1.1905 21 6 2.4346 -3.0301 0.5133 22 1 3.3373 -2.6971 0.0228 23 6 2.0670 -4.3675 0.4572 24 7 0.9665 -4.7732 1.0545 25 14 3.1343 -5.5914 -0.4660 26 1 4.4916 -5.6173 0.1359 27 1 2.5269 -6.9436 -0.3769 28 1 3.2324 -5.1863 -1.8913 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.6767 1.9563 0.8901 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9564 -0.8899 36 1 0.3510 -0.2310 2.4933 37 1 1.6437 0.9925 2.4929 38 1 3.1133 -0.5598 3.7496 39 1 1.8206 -1.7833 3.7501 40 1 2.8121 0.7692 6.2809 41 1 2.5795 1.6617 4.7585 42 1 1.3187 1.7004 6.0144 43 1 -0.2706 2.1621 6.3992 44 1 -1.3195 1.2474 5.2781 45 1 -2.9482 2.1090 6.8292 46 1 -1.8371 1.9232 8.2319 47 1 -0.9181 -1.8328 7.6638 48 1 0.8418 -2.4320 1.6312 49 1 0.7099 -5.7078 1.0157 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700507635.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:54:22 Heat of formation + Delta-G solvation = -117.419054 kcal Electronic energy + Delta-G solvation = -30344.238892 eV Core-core repulsion = 26239.911297 eV Total energy + Delta-G solvation = -4104.327595 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.31211 -39.06570 -38.18600 -37.43064 -36.92056 -36.60534 -35.05282 -32.86218 -32.64866 -31.41033 -28.40071 -27.92786 -27.69863 -26.33521 -24.75979 -23.64768 -23.02668 -20.62816 -20.31096 -19.84204 -19.21849 -18.74130 -18.51550 -17.55829 -17.03442 -16.87382 -16.76197 -16.26548 -15.83456 -15.71974 -15.53892 -15.21072 -14.87562 -14.64862 -14.60188 -14.36383 -14.13557 -13.87322 -13.64052 -13.42225 -13.25864 -13.12000 -13.07927 -12.97306 -12.84781 -12.80135 -12.76246 -12.70900 -12.45430 -12.35249 -12.17616 -12.11993 -11.79357 -11.65281 -11.45609 -11.35384 -11.28638 -11.07926 -10.83126 -10.21501 -9.55654 -8.90249 -7.88001 -5.15829 -0.73343 1.43772 1.47422 1.48647 1.53542 1.66598 2.10709 2.58105 2.63736 2.88678 3.29896 3.43824 3.45734 3.62256 3.94733 3.96613 4.06938 4.14647 4.21529 4.32221 4.34445 4.42884 4.46094 4.55651 4.61221 4.64342 4.73305 4.77821 4.85116 4.89109 4.92423 4.93593 4.98494 5.13675 5.15932 5.22318 5.33874 5.39749 5.44485 5.52673 5.65810 5.66549 5.74094 6.00634 6.32409 6.50838 7.27675 7.37503 8.19135 8.39765 9.35188 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.012280 B = 0.003102 C = 0.002788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2279.604252 B = 9023.341191 C =10039.184622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.111 4.111 3 C -0.133 4.133 4 C 0.178 3.822 5 H 0.049 0.951 6 C -0.119 4.119 7 C 0.123 3.877 8 N -0.609 5.609 9 C 0.055 3.945 10 C 0.478 3.522 11 O -0.576 6.576 12 C 0.098 3.902 13 H 0.155 0.845 14 C -0.126 4.126 15 C -0.533 4.533 16 S 2.543 3.457 17 O -1.009 7.009 18 O -0.996 6.996 19 N -1.085 6.085 20 N -0.731 5.731 21 C -0.229 4.229 22 H 0.077 0.923 23 C -0.081 4.081 24 N -0.973 5.973 25 Si 0.968 3.032 26 H -0.276 1.276 27 H -0.303 1.303 28 H -0.278 1.278 29 H 0.059 0.941 30 H 0.054 0.946 31 H 0.016 0.984 32 H 0.037 0.963 33 H 0.071 0.929 34 H 0.058 0.942 35 H 0.055 0.945 36 H 0.039 0.961 37 H 0.103 0.897 38 H 0.091 0.909 39 H 0.036 0.964 40 H 0.073 0.927 41 H 0.092 0.908 42 H 0.108 0.892 43 H 0.180 0.820 44 H 0.086 0.914 45 H 0.175 0.825 46 H 0.192 0.808 47 H 0.435 0.565 48 H 0.367 0.633 49 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.959 26.374 15.747 30.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.133 4.133 3 C -0.190 4.190 4 C 0.070 3.930 5 H 0.067 0.933 6 C -0.158 4.158 7 C 0.000 4.000 8 N -0.342 5.342 9 C -0.086 4.086 10 C 0.264 3.736 11 O -0.453 6.453 12 C -0.014 4.014 13 H 0.172 0.828 14 C -0.165 4.165 15 C -0.668 4.668 16 S 2.643 3.357 17 O -0.998 6.998 18 O -0.986 6.986 19 N -0.848 5.848 20 N -0.370 5.370 21 C -0.361 4.361 22 H 0.095 0.905 23 C -0.273 4.273 24 N -0.625 5.625 25 Si 0.798 3.202 26 H -0.202 1.202 27 H -0.230 1.230 28 H -0.205 1.205 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.036 0.964 32 H 0.056 0.944 33 H 0.090 0.910 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.058 0.942 37 H 0.122 0.878 38 H 0.110 0.890 39 H 0.055 0.945 40 H 0.091 0.909 41 H 0.110 0.890 42 H 0.127 0.873 43 H 0.197 0.803 44 H 0.105 0.895 45 H 0.193 0.807 46 H 0.209 0.791 47 H 0.274 0.726 48 H 0.198 0.802 49 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 0.898 25.350 15.522 29.739 hybrid contribution 0.437 -2.252 -0.849 2.446 sum 1.335 23.099 14.674 27.398 Atomic orbital electron populations 1.21659 0.96322 0.99684 1.01080 1.21670 0.95564 0.97043 0.98994 1.21779 1.00956 0.93986 1.02311 1.20483 0.96751 0.83031 0.92770 0.93342 1.22080 0.99434 1.00869 0.93417 1.21286 0.97666 0.97020 0.84069 1.48057 1.26387 1.31339 1.28389 1.22437 0.99883 0.86072 1.00181 1.21900 0.80996 0.84348 0.86327 1.90856 1.61842 1.28692 1.63944 1.21583 0.97209 0.89436 0.93167 0.82815 1.22743 0.98059 0.95835 0.99877 1.30585 1.08290 1.16805 1.11169 1.07033 0.73441 0.82035 0.73145 1.93636 1.72916 1.80532 1.52730 1.93559 1.80419 1.85319 1.39324 1.54758 1.28302 1.26458 1.75329 1.42692 1.27769 1.03678 1.62901 1.19587 1.03331 0.89216 1.23963 0.90477 1.25538 0.99282 0.99313 1.03163 1.69889 1.26865 1.15113 1.50594 0.85284 0.78221 0.78022 0.78695 1.20159 1.22956 1.20474 0.92242 0.92669 0.96442 0.94432 0.90983 0.92295 0.92549 0.94227 0.87836 0.89050 0.94485 0.90870 0.88977 0.87337 0.80312 0.89510 0.80707 0.79081 0.72604 0.80170 0.94611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.60 8.59 71.98 0.62 -3.98 16 2 C -0.11 -3.81 2.88 -10.80 -0.03 -3.85 16 3 C -0.13 -3.09 8.95 71.98 0.64 -2.44 16 4 C 0.18 6.76 2.06 44.99 0.09 6.86 16 5 H 0.05 1.80 8.08 -2.39 -0.02 1.78 16 6 C -0.12 -3.66 4.28 30.60 0.13 -3.53 16 7 C 0.12 3.81 5.29 86.38 0.46 4.27 16 8 N -0.61 -13.35 2.87 -846.77 -2.43 -15.78 16 9 C 0.05 0.41 9.89 127.77 1.26 1.67 16 10 C 0.48 13.13 6.71 87.66 0.59 13.72 16 11 O -0.58 -24.99 16.07 -3.03 -0.05 -25.04 16 12 C 0.10 1.45 2.82 44.32 0.13 1.58 16 13 H 0.15 0.79 7.36 -2.39 -0.02 0.77 16 14 C -0.13 -0.82 5.42 31.54 0.17 -0.65 16 15 C -0.53 -2.28 7.65 72.86 0.56 -1.73 16 16 S 2.54 52.58 6.47 -56.49 -0.37 52.22 16 17 O -1.01 -33.95 18.14 -127.81 -2.32 -36.27 16 18 O -1.00 -26.15 18.14 -127.81 -2.32 -28.46 16 19 N -1.08 -22.59 6.11 -172.33 -1.05 -23.65 16 20 N -0.73 -37.96 4.03 -322.92 -1.30 -39.26 16 21 C -0.23 -13.03 9.93 84.03 0.83 -12.19 16 22 H 0.08 4.15 7.83 -2.91 -0.02 4.13 16 23 C -0.08 -4.91 5.50 84.86 0.47 -4.44 16 24 N -0.97 -64.47 13.06 21.65 0.28 -64.19 16 25 Si 0.97 48.46 29.55 68.60 2.03 50.48 16 26 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 27 H -0.30 -15.55 7.11 99.48 0.71 -14.84 16 28 H -0.28 -13.35 7.11 99.48 0.71 -12.65 16 29 H 0.06 1.89 6.46 -2.39 -0.02 1.87 16 30 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.02 0.75 7.75 -2.39 -0.02 0.73 16 32 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.07 1.36 6.46 -2.38 -0.02 1.34 16 34 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.04 1.46 6.65 -2.38 -0.02 1.44 16 37 H 0.10 2.23 6.34 -2.39 -0.02 2.21 16 38 H 0.09 2.40 8.07 -2.39 -0.02 2.38 16 39 H 0.04 1.64 7.03 -2.39 -0.02 1.62 16 40 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16 41 H 0.09 0.47 8.07 -2.39 -0.02 0.45 16 42 H 0.11 -0.06 4.42 -2.38 -0.01 -0.07 16 43 H 0.18 -0.81 6.30 -2.39 -0.02 -0.83 16 44 H 0.09 0.99 7.82 -2.39 -0.02 0.98 16 45 H 0.18 -0.01 8.14 -2.39 -0.02 -0.03 16 46 H 0.19 -0.70 8.14 -2.38 -0.02 -0.71 16 47 H 0.43 9.66 8.96 -92.99 -0.83 8.82 16 48 H 0.37 21.88 7.80 -92.71 -0.72 21.16 16 49 H 0.25 15.96 8.31 -92.71 -0.77 15.19 16 Total: -1.00 -103.18 396.47 -2.19 -105.37 By element: Atomic # 1 Polarization: 29.89 SS G_CDS: -0.58 Total: 29.31 kcal Atomic # 6 Polarization: -10.64 SS G_CDS: 5.92 Total: -4.72 kcal Atomic # 7 Polarization: -138.37 SS G_CDS: -4.50 Total: -142.88 kcal Atomic # 8 Polarization: -85.09 SS G_CDS: -4.69 Total: -89.78 kcal Atomic # 14 Polarization: 48.46 SS G_CDS: 2.03 Total: 50.48 kcal Atomic # 16 Polarization: 52.58 SS G_CDS: -0.37 Total: 52.22 kcal Total: -103.18 -2.19 -105.37 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700507635.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.053 kcal (2) G-P(sol) polarization free energy of solvation -103.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -105.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds