Wall clock time and date at job start Wed Apr 1 2020 05:24:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47208 * 2 1 4 4 C 1.52999 * 109.47208 * 180.02562 * 3 2 1 5 5 S 1.81399 * 109.47446 * 179.97438 * 4 3 2 6 6 O 1.42100 * 110.53933 * 68.37157 * 5 4 3 7 7 O 1.42097 * 110.54340 * 291.62404 * 5 4 3 8 8 N 1.65595 * 104.45261 * 179.97438 * 5 4 3 9 9 C 1.46503 * 120.00017 * 64.99655 * 8 5 4 10 10 C 1.50694 * 109.46969 * 164.99828 * 9 8 5 11 11 O 1.21282 * 120.00666 * 0.02562 * 10 9 8 12 12 N 1.34783 * 119.99858 * 180.02562 * 10 9 8 13 13 C 1.46500 * 119.99869 * 180.02562 * 12 10 9 14 14 H 1.09003 * 109.47194 * 35.00352 * 13 12 10 15 15 C 1.52999 * 109.47087 * 274.99848 * 13 12 10 16 16 C 1.53003 * 109.47163 * 155.00347 * 13 12 10 17 17 C 1.53486 * 114.20850 * 180.02562 * 16 13 12 18 18 N 1.47064 * 87.98715 * 87.51930 * 17 16 13 19 19 C 1.36943 * 136.05552 * 207.08901 * 18 17 16 20 20 H 1.07995 * 119.99927 * 7.55397 * 19 18 17 21 21 C 1.38813 * 119.99686 * 187.55568 * 19 18 17 22 22 N 1.31616 * 120.00311 * 174.37868 * 21 19 18 23 23 Si 1.86810 * 119.99981 * 354.38142 * 21 19 18 24 24 H 1.48499 * 109.46858 * 174.94995 * 23 21 19 25 25 H 1.48498 * 109.46907 * 294.94478 * 23 21 19 26 26 H 1.48495 * 109.47036 * 54.94533 * 23 21 19 27 27 C 1.47066 * 87.88390 * 27.34185 * 18 17 16 28 28 H 1.09002 * 109.47326 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47452 * 300.00086 * 1 2 3 30 30 H 1.09003 * 109.46770 * 60.00484 * 1 2 3 31 31 H 1.09005 * 109.46834 * 239.99456 * 2 1 3 32 32 H 1.09004 * 109.47009 * 120.00010 * 2 1 3 33 33 H 1.08995 * 109.46985 * 59.99627 * 3 2 1 34 34 H 1.09003 * 109.46860 * 299.99461 * 3 2 1 35 35 H 1.09004 * 109.47541 * 59.99696 * 4 3 2 36 36 H 1.09004 * 109.47009 * 300.00010 * 4 3 2 37 37 H 0.96997 * 120.00364 * 244.99978 * 8 5 4 38 38 H 1.09000 * 109.46562 * 45.00430 * 9 8 5 39 39 H 1.08998 * 109.47379 * 285.00342 * 9 8 5 40 40 H 0.96997 * 119.99750 * 0.02562 * 12 10 9 41 41 H 1.08994 * 109.47561 * 300.00057 * 15 13 12 42 42 H 1.09000 * 109.46986 * 60.00526 * 15 13 12 43 43 H 1.09004 * 109.47074 * 180.02562 * 15 13 12 44 44 H 1.08998 * 113.41116 * 46.79441 * 16 13 12 45 45 H 1.09003 * 113.46770 * 332.73878 * 17 16 13 46 46 H 1.09004 * 113.52153 * 202.31032 * 17 16 13 47 47 H 0.96998 * 119.99357 * 354.81763 * 22 21 19 48 48 H 1.08996 * 113.46631 * 87.44126 * 27 18 17 49 49 H 1.09001 * 113.46561 * 217.88042 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 16 4.1747 3.1527 -0.0014 6 8 3.8791 3.7866 1.2355 7 8 3.8782 3.7859 -1.2384 8 7 5.8243 3.0077 -0.0013 9 6 6.5071 2.4089 -1.1509 10 6 7.9797 2.7207 -1.0789 11 8 8.4161 3.3779 -0.1577 12 7 8.8119 2.2691 -2.0381 13 6 10.2435 2.5717 -1.9678 14 1 10.5625 2.5792 -0.9255 15 6 10.5060 3.9440 -2.5914 16 6 11.0286 1.5049 -2.7337 17 6 12.5486 1.7176 -2.7292 18 7 12.5984 0.9624 -1.4682 19 6 13.4191 0.9258 -0.3726 20 1 14.2052 1.6579 -0.2621 21 6 13.2404 -0.0524 0.5960 22 7 14.0951 -0.1570 1.5913 23 14 11.7867 -1.2206 0.4866 24 1 11.8888 -2.2398 1.5618 25 1 10.5240 -0.4559 0.6478 26 1 11.7918 -1.8946 -0.8366 27 6 11.3826 0.2594 -1.9046 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.6766 1.9563 0.8899 34 1 1.6767 1.9562 -0.8901 35 1 3.9330 0.9287 -0.8908 36 1 3.9337 0.9285 0.8891 37 1 6.3386 3.3192 0.7598 38 1 6.0937 2.8183 -2.0726 39 1 6.3633 1.3285 -1.1366 40 1 8.4628 1.7437 -2.7750 41 1 10.1870 3.9365 -3.6336 42 1 9.9468 4.7040 -2.0458 43 1 11.5713 4.1689 -2.5395 44 1 10.6111 1.2815 -3.7155 45 1 12.8405 2.7623 -2.6213 46 1 13.0599 1.2203 -3.5535 47 1 14.8900 0.3987 1.6083 48 1 11.5856 -0.6228 -2.5117 49 1 10.6809 0.0618 -1.0942 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700549301.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:24:05 Heat of formation + Delta-G solvation = -60.092338 kcal Electronic energy + Delta-G solvation = -28942.105647 eV Core-core repulsion = 24840.263925 eV Total energy + Delta-G solvation = -4101.841723 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.11985 -38.73879 -37.41004 -36.36878 -36.18703 -35.31595 -34.65162 -32.43961 -30.99116 -30.80039 -27.87878 -27.28042 -25.36293 -24.85373 -23.73200 -21.82424 -21.61829 -20.57558 -19.71415 -19.21342 -18.18894 -17.52242 -17.16174 -16.81117 -16.45451 -16.33024 -15.88997 -15.58169 -15.17738 -15.06546 -14.47027 -14.17927 -13.95749 -13.80721 -13.51701 -13.39503 -13.34618 -13.25488 -13.05206 -12.43630 -12.40253 -12.31542 -12.25654 -12.18958 -12.08887 -12.01645 -11.78650 -11.52062 -11.31567 -11.18868 -11.02195 -10.91682 -10.65690 -10.35300 -10.28444 -10.02203 -9.78524 -9.26193 -9.14897 -9.00282 -8.88837 -7.17606 -6.29116 -3.23259 -0.11886 2.30134 2.54705 3.10722 3.35753 3.40882 3.42818 3.61624 3.81119 4.01269 4.28013 4.38034 4.42602 4.58459 4.65931 4.71868 4.78115 4.87504 4.88870 4.92219 4.98252 5.02688 5.11053 5.23042 5.31017 5.36736 5.43792 5.55873 5.56018 5.63785 5.64578 5.78006 5.80655 5.88124 6.01640 6.16118 6.22636 6.24476 6.36323 6.46324 6.56237 6.69933 6.84835 7.10728 7.48023 8.16900 8.24233 8.97696 9.49977 10.35676 11.20800 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.013066 B = 0.002512 C = 0.002314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2142.456651 B =11142.520504 C =12096.824853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.117 4.117 3 C -0.114 4.114 4 C -0.632 4.632 5 S 2.616 3.384 6 O -0.952 6.952 7 O -0.955 6.955 8 N -1.108 6.108 9 C 0.095 3.905 10 C 0.510 3.490 11 O -0.525 6.525 12 N -0.719 5.719 13 C 0.165 3.835 14 H 0.104 0.896 15 C -0.157 4.157 16 C -0.142 4.142 17 C 0.130 3.870 18 N -0.627 5.627 19 C -0.302 4.302 20 H 0.083 0.917 21 C -0.026 4.026 22 N -0.935 5.935 23 Si 1.071 2.929 24 H -0.296 1.296 25 H -0.294 1.294 26 H -0.288 1.288 27 C 0.100 3.900 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.133 0.867 36 H 0.137 0.863 37 H 0.429 0.571 38 H 0.110 0.890 39 H 0.095 0.905 40 H 0.399 0.601 41 H 0.053 0.947 42 H 0.056 0.944 43 H 0.070 0.930 44 H 0.078 0.922 45 H 0.050 0.950 46 H 0.040 0.960 47 H 0.261 0.739 48 H 0.045 0.955 49 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.427 1.150 -10.435 27.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.156 4.156 3 C -0.153 4.153 4 C -0.761 4.761 5 S 2.708 3.292 6 O -0.942 6.942 7 O -0.945 6.945 8 N -0.871 5.871 9 C -0.036 4.036 10 C 0.293 3.707 11 O -0.400 6.400 12 N -0.370 5.370 13 C 0.062 3.938 14 H 0.122 0.878 15 C -0.216 4.216 16 C -0.162 4.162 17 C 0.003 3.997 18 N -0.355 5.355 19 C -0.428 4.428 20 H 0.100 0.900 21 C -0.224 4.224 22 N -0.577 5.577 23 Si 0.904 3.096 24 H -0.223 1.223 25 H -0.222 1.222 26 H -0.216 1.216 27 C -0.026 4.026 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.151 0.849 36 H 0.155 0.845 37 H 0.268 0.732 38 H 0.128 0.872 39 H 0.113 0.887 40 H 0.233 0.767 41 H 0.072 0.928 42 H 0.076 0.924 43 H 0.089 0.911 44 H 0.096 0.904 45 H 0.068 0.932 46 H 0.058 0.942 47 H 0.071 0.929 48 H 0.063 0.937 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -26.242 1.162 -8.888 27.731 hybrid contribution 1.233 0.175 -0.985 1.587 sum -25.009 1.337 -9.873 26.921 Atomic orbital electron populations 1.21818 0.95387 1.02090 1.02192 1.21483 0.96151 0.95152 1.02776 1.21377 0.90050 1.00050 1.03799 1.30668 1.06903 1.26453 1.12098 1.04879 0.72708 0.77202 0.74420 1.93628 1.82782 1.72853 1.44972 1.93603 1.83266 1.72013 1.45646 1.55382 1.25832 1.77920 1.27976 1.21108 0.92306 0.99456 0.90716 1.20283 0.87907 0.80023 0.82460 1.90745 1.77101 1.38587 1.33564 1.46026 1.08815 1.55504 1.26681 1.20695 0.77578 0.93163 1.02413 0.87799 1.22111 1.02608 0.96626 1.00210 1.23206 0.97497 0.97205 0.98252 1.22362 0.90871 0.96846 0.89631 1.46033 1.29343 1.44625 1.15545 1.20142 1.12153 1.13560 0.96980 0.89964 1.25690 1.04071 0.98381 0.94279 1.70904 1.12207 1.41984 1.32582 0.83707 0.74994 0.75989 0.74904 1.22326 1.22222 1.21556 1.22821 0.89987 0.93967 0.95810 0.92346 0.92432 0.92443 0.91440 0.91408 0.90194 0.90209 0.84851 0.84482 0.73190 0.87214 0.88707 0.76746 0.92812 0.92447 0.91092 0.90359 0.93212 0.94207 0.92916 0.93711 0.92975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.73 9.91 37.16 0.37 -0.37 16 2 C -0.12 -0.58 5.93 -26.73 -0.16 -0.74 16 3 C -0.11 -0.64 5.22 -26.73 -0.14 -0.78 16 4 C -0.63 -3.32 6.07 37.16 0.23 -3.09 16 5 S 2.62 23.37 5.46 -107.50 -0.59 22.79 16 6 O -0.95 -12.02 18.08 -57.54 -1.04 -13.06 16 7 O -0.96 -11.05 17.50 -57.54 -1.01 -12.06 16 8 N -1.11 -10.70 5.82 -11.66 -0.07 -10.76 16 9 C 0.09 0.79 6.61 -5.19 -0.03 0.76 16 10 C 0.51 6.63 7.86 -10.99 -0.09 6.54 16 11 O -0.52 -9.28 15.39 5.56 0.09 -9.19 16 12 N -0.72 -8.47 5.08 -53.80 -0.27 -8.74 16 13 C 0.17 2.52 2.43 -67.93 -0.16 2.35 16 14 H 0.10 2.12 7.36 -51.93 -0.38 1.74 16 15 C -0.16 -2.11 9.29 37.16 0.35 -1.77 16 16 C -0.14 -2.15 3.73 -89.97 -0.34 -2.48 16 17 C 0.13 2.37 8.08 -8.52 -0.07 2.30 16 18 N -0.63 -14.90 3.49 -184.63 -0.64 -15.55 16 19 C -0.30 -8.66 11.08 -15.06 -0.17 -8.83 16 20 H 0.08 2.50 8.06 -52.49 -0.42 2.07 16 21 C -0.03 -0.76 5.50 -17.43 -0.10 -0.86 16 22 N -0.93 -29.77 13.70 55.49 0.76 -29.01 16 23 Si 1.07 26.78 25.16 -169.99 -4.28 22.50 16 24 H -0.30 -7.56 7.11 56.52 0.40 -7.16 16 25 H -0.29 -7.02 6.51 56.52 0.37 -6.65 16 26 H -0.29 -6.61 6.20 56.52 0.35 -6.26 16 27 C 0.10 1.97 5.24 -8.38 -0.04 1.92 16 28 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 29 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 33 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.13 0.40 8.14 -51.92 -0.42 -0.02 16 36 H 0.14 0.57 8.14 -51.92 -0.42 0.15 16 37 H 0.43 4.81 7.66 -34.47 -0.26 4.55 16 38 H 0.11 0.70 7.70 -51.93 -0.40 0.30 16 39 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.40 3.09 8.60 -40.82 -0.35 2.74 16 41 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.07 0.99 6.50 -51.93 -0.34 0.65 16 44 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 45 H 0.05 0.88 6.43 -51.93 -0.33 0.55 16 46 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.26 8.21 8.73 -40.82 -0.36 7.85 16 48 H 0.05 0.86 7.66 -51.93 -0.40 0.46 16 49 H 0.05 1.09 4.71 -51.93 -0.24 0.85 16 LS Contribution 403.85 15.07 6.09 6.09 Total: -1.00 -40.00 403.85 -9.61 -49.61 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: -8.29 Total: 2.42 kcal Atomic # 6 Polarization: -4.69 SS G_CDS: -0.36 Total: -5.04 kcal Atomic # 7 Polarization: -63.83 SS G_CDS: -0.23 Total: -64.05 kcal Atomic # 8 Polarization: -32.35 SS G_CDS: -1.96 Total: -34.31 kcal Atomic # 14 Polarization: 26.78 SS G_CDS: -4.28 Total: 22.50 kcal Atomic # 16 Polarization: 23.37 SS G_CDS: -0.59 Total: 22.79 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -40.00 -9.61 -49.61 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700549301.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.481 kcal (2) G-P(sol) polarization free energy of solvation -40.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds