Wall clock time and date at job start Wed Apr 1 2020 04:54:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 C 1.52999 * 109.47010 * 120.00125 * 2 1 3 5 5 H 1.08995 * 109.47098 * 299.99700 * 4 2 1 6 6 C 1.53004 * 109.47083 * 59.99777 * 4 2 1 7 7 C 1.53003 * 109.46807 * 184.99648 * 6 4 2 8 8 N 1.46501 * 109.46843 * 179.97438 * 7 6 4 9 9 C 1.34780 * 119.99967 * 179.97438 * 8 7 6 10 10 O 1.21282 * 119.99829 * 0.02562 * 9 8 7 11 11 C 1.50696 * 119.99932 * 180.02562 * 9 8 7 12 12 N 1.46499 * 109.46962 * 180.02562 * 11 9 8 13 13 C 1.47067 * 126.30065 * 274.68805 * 12 11 9 14 14 C 1.54312 * 109.96825 * 150.90631 * 13 12 11 15 15 C 1.55606 * 104.19122 * 45.50786 * 14 13 12 16 16 S 1.66998 * 126.30330 * 95.00249 * 12 11 9 17 17 O 1.42100 * 105.13129 * 298.89063 * 16 12 11 18 18 O 1.42099 * 105.13423 * 68.56009 * 16 12 11 19 19 N 1.46498 * 109.47257 * 179.97438 * 4 2 1 20 20 C 1.36943 * 119.99752 * 84.72207 * 19 4 2 21 21 H 1.08002 * 119.99793 * 0.27665 * 20 19 4 22 22 C 1.38811 * 120.00012 * 180.27737 * 20 19 4 23 23 N 1.31624 * 119.99698 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00072 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47294 * 90.00155 * 24 22 20 26 26 H 1.48499 * 109.47218 * 210.00015 * 24 22 20 27 27 H 1.48496 * 109.47166 * 329.99846 * 24 22 20 28 28 H 1.09003 * 109.47062 * 300.00363 * 1 2 3 29 29 H 1.08996 * 109.47077 * 59.99864 * 1 2 3 30 30 H 1.08996 * 109.47248 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.46945 * 239.99919 * 2 1 3 32 32 H 1.09003 * 109.47146 * 179.97438 * 3 2 1 33 33 H 1.08996 * 109.47253 * 300.00028 * 3 2 1 34 34 H 1.08995 * 109.47275 * 60.00121 * 3 2 1 35 35 H 1.08993 * 109.47108 * 304.99684 * 6 4 2 36 36 H 1.08998 * 109.47048 * 65.00196 * 6 4 2 37 37 H 1.08988 * 109.47304 * 300.00405 * 7 6 4 38 38 H 1.08998 * 109.46869 * 60.00439 * 7 6 4 39 39 H 0.96997 * 120.00090 * 0.02562 * 8 7 6 40 40 H 1.09002 * 109.47320 * 300.00084 * 11 9 8 41 41 H 1.08998 * 109.47063 * 60.00511 * 11 9 8 42 42 H 1.09002 * 109.35408 * 271.18615 * 13 12 11 43 43 H 1.08996 * 109.35575 * 30.82697 * 13 12 11 44 44 H 1.09001 * 110.65418 * 286.76808 * 14 13 12 45 45 H 1.09006 * 110.38574 * 164.11195 * 14 13 12 46 46 H 1.09003 * 111.16268 * 204.05808 * 15 14 13 47 47 H 1.08998 * 111.16682 * 79.79804 * 15 14 13 48 48 H 0.97001 * 120.00384 * 265.00562 * 19 4 2 49 49 H 0.96999 * 119.99739 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6767 -0.2075 2.1392 6 6 1.5299 -2.1638 1.2492 7 6 1.9348 -2.8478 2.5566 8 7 1.4459 -4.2289 2.5568 9 6 1.6867 -5.0288 3.6145 10 8 2.3078 -4.6052 4.5662 11 6 1.1843 -6.4495 3.6145 12 7 1.5718 -7.1045 4.8663 13 6 2.8547 -7.7692 5.1403 14 6 3.1833 -7.6805 6.6454 15 6 1.8480 -8.0569 7.3502 16 16 0.6353 -7.2402 6.2423 17 8 0.3822 -5.9033 6.6521 18 8 -0.4175 -8.1267 5.8886 19 7 3.5050 -0.7218 1.2490 20 6 4.1901 0.3552 1.7447 21 1 3.6505 1.2032 2.1400 22 6 5.5782 0.3572 1.7392 23 7 6.2359 -0.6760 1.2570 24 14 6.5129 1.8261 2.4161 25 1 6.7664 1.6263 3.8656 26 1 7.8074 1.9613 1.7012 27 1 5.7078 3.0583 2.2196 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8899 34 1 1.6767 1.9563 0.8899 35 1 0.4437 -2.1650 1.1597 36 1 1.9645 -2.7028 0.4074 37 1 3.0210 -2.8465 2.6461 38 1 1.5001 -2.3088 3.3983 39 1 0.9495 -4.5677 1.7955 40 1 0.0979 -6.4508 3.5253 41 1 1.6186 -6.9885 2.7725 42 1 2.7901 -8.8158 4.8429 43 1 3.6440 -7.2805 4.5691 44 1 3.4840 -6.6678 6.9143 45 1 3.9659 -8.3931 6.9059 46 1 1.8036 -7.6413 8.3569 47 1 1.7021 -9.1370 7.3657 48 1 3.9897 -1.4834 0.8939 49 1 7.2058 -0.6748 1.2535 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700711817.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:54:28 Heat of formation + Delta-G solvation = -91.972532 kcal Electronic energy + Delta-G solvation = -29302.319308 eV Core-core repulsion = 25199.095157 eV Total energy + Delta-G solvation = -4103.224151 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 2.53 seconds Orbital eigenvalues (eV) -39.57101 -37.61411 -37.20899 -37.13555 -36.04502 -34.59363 -33.38949 -33.03167 -31.18659 -29.62787 -28.10143 -26.40625 -25.99672 -24.84840 -22.91299 -22.41697 -21.10453 -20.62855 -19.20207 -19.07682 -17.59623 -17.52932 -17.12889 -16.74549 -16.00080 -15.67692 -15.37969 -14.97920 -14.76127 -14.73286 -14.17796 -14.01018 -13.88709 -13.67836 -13.53325 -13.33096 -13.10467 -13.01062 -12.62248 -12.26486 -12.10825 -12.03911 -11.98866 -11.85755 -11.63025 -11.59205 -11.30168 -11.15152 -10.89916 -10.80802 -10.74622 -10.54988 -10.41863 -10.26692 -10.14564 -10.01892 -9.85654 -9.42673 -9.06856 -8.81934 -8.73283 -6.90733 -5.73233 -3.00299 -0.05203 2.16801 2.79901 3.29542 3.39184 3.46326 3.52086 3.52691 3.60840 3.98836 4.20248 4.51752 4.60657 4.62674 4.81336 4.93179 5.01842 5.07518 5.23233 5.26441 5.31162 5.40396 5.51536 5.56068 5.57717 5.59746 5.73459 5.74120 5.94902 6.05810 6.10629 6.19190 6.27875 6.30131 6.42595 6.47077 6.59730 6.69882 6.73792 6.78604 6.85816 7.15456 7.35616 7.69443 7.75509 8.43218 8.45311 9.56820 10.13682 10.48569 11.49380 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.012935 B = 0.002538 C = 0.002243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2164.153449 B =11031.193255 C =12482.558536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.111 4.111 3 C -0.141 4.141 4 C 0.185 3.815 5 H 0.049 0.951 6 C -0.136 4.136 7 C 0.123 3.877 8 N -0.730 5.730 9 C 0.479 3.521 10 O -0.515 6.515 11 C 0.142 3.858 12 N -0.975 5.975 13 C 0.083 3.917 14 C -0.125 4.125 15 C -0.597 4.597 16 S 2.569 3.431 17 O -0.941 6.941 18 O -0.962 6.962 19 N -0.721 5.721 20 C -0.229 4.229 21 H 0.072 0.928 22 C -0.014 4.014 23 N -0.933 5.933 24 Si 0.901 3.099 25 H -0.291 1.291 26 H -0.293 1.293 27 H -0.282 1.282 28 H 0.048 0.952 29 H 0.042 0.958 30 H 0.049 0.951 31 H 0.059 0.941 32 H 0.086 0.914 33 H 0.028 0.972 34 H 0.039 0.961 35 H 0.066 0.934 36 H 0.064 0.936 37 H 0.083 0.917 38 H 0.062 0.938 39 H 0.395 0.605 40 H 0.106 0.894 41 H 0.110 0.890 42 H 0.076 0.924 43 H 0.096 0.904 44 H 0.100 0.900 45 H 0.109 0.891 46 H 0.141 0.859 47 H 0.139 0.861 48 H 0.383 0.617 49 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.249 -18.029 4.980 21.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.132 4.132 3 C -0.198 4.198 4 C 0.075 3.925 5 H 0.067 0.933 6 C -0.174 4.174 7 C 0.000 4.000 8 N -0.383 5.383 9 C 0.262 3.738 10 O -0.389 6.389 11 C 0.013 3.987 12 N -0.814 5.814 13 C -0.043 4.043 14 C -0.164 4.164 15 C -0.727 4.727 16 S 2.664 3.336 17 O -0.930 6.930 18 O -0.951 6.951 19 N -0.362 5.362 20 C -0.361 4.361 21 H 0.089 0.911 22 C -0.210 4.210 23 N -0.581 5.581 24 Si 0.732 3.268 25 H -0.218 1.218 26 H -0.220 1.220 27 H -0.208 1.208 28 H 0.067 0.933 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.105 0.895 33 H 0.048 0.952 34 H 0.059 0.941 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.102 0.898 38 H 0.081 0.919 39 H 0.228 0.772 40 H 0.123 0.877 41 H 0.128 0.872 42 H 0.094 0.906 43 H 0.114 0.886 44 H 0.119 0.881 45 H 0.127 0.873 46 H 0.159 0.841 47 H 0.158 0.842 48 H 0.217 0.783 49 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -11.704 -17.210 5.831 21.614 hybrid contribution 1.219 0.235 -0.110 1.247 sum -10.484 -16.975 5.721 20.755 Atomic orbital electron populations 1.21938 0.97142 1.00642 1.00743 1.21772 0.93279 0.97715 1.00469 1.21834 1.04267 0.94874 0.98814 1.20188 0.85978 0.91163 0.95218 0.93327 1.22127 1.00485 0.98202 0.96596 1.21432 1.01102 0.79371 0.98058 1.46114 1.58093 1.14024 1.20085 1.21249 0.81136 0.88242 0.83157 1.90745 1.39041 1.75285 1.33858 1.20820 1.01055 0.90400 0.86408 1.56791 1.27703 1.69500 1.27449 1.22102 0.88014 0.97909 0.96317 1.22691 0.95866 1.05473 0.92361 1.30825 1.14157 1.13547 1.14216 1.06534 0.74932 0.75790 0.76297 1.93675 1.83550 1.34175 1.81576 1.93610 1.52402 1.67491 1.81620 1.42441 0.98941 1.20902 1.73884 1.19201 0.88796 0.96133 1.31931 0.91052 1.24697 0.96471 0.97735 1.02059 1.69654 1.06730 1.29903 1.51845 0.86276 0.79557 0.82374 0.78552 1.21808 1.21953 1.20790 0.93283 0.93850 0.93190 0.92232 0.89488 0.95241 0.94137 0.91538 0.91691 0.89835 0.91925 0.77157 0.87651 0.87195 0.90566 0.88593 0.88096 0.87251 0.84124 0.84237 0.78343 0.93671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 8.85 37.16 0.33 -1.68 16 2 C -0.11 -1.88 2.69 -90.62 -0.24 -2.13 16 3 C -0.14 -2.60 8.26 37.16 0.31 -2.29 16 4 C 0.19 3.44 2.02 -67.93 -0.14 3.31 16 5 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 6 C -0.14 -2.02 4.65 -26.73 -0.12 -2.15 16 7 C 0.12 2.03 5.56 -4.04 -0.02 2.01 16 8 N -0.73 -9.42 5.56 -60.30 -0.33 -9.75 16 9 C 0.48 6.83 7.90 -10.99 -0.09 6.74 16 10 O -0.52 -9.82 16.43 5.56 0.09 -9.73 16 11 C 0.14 1.37 6.83 -5.20 -0.04 1.33 16 12 N -0.97 -9.80 2.80 -114.48 -0.32 -10.12 16 13 C 0.08 0.60 6.83 -3.05 -0.02 0.58 16 14 C -0.12 -0.79 6.81 -24.66 -0.17 -0.96 16 15 C -0.60 -3.58 7.51 38.54 0.29 -3.29 16 16 S 2.57 27.42 6.17 -107.50 -0.66 26.76 16 17 O -0.94 -14.55 18.13 -57.41 -1.04 -15.59 16 18 O -0.96 -12.29 18.13 -57.41 -1.04 -13.33 16 19 N -0.72 -16.92 4.46 -53.43 -0.24 -17.16 16 20 C -0.23 -6.08 7.55 -15.06 -0.11 -6.19 16 21 H 0.07 1.87 7.38 -52.49 -0.39 1.48 16 22 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 23 N -0.93 -27.63 13.06 55.49 0.72 -26.90 16 24 Si 0.90 22.36 29.55 -169.99 -5.02 17.34 16 25 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 26 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 27 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.05 0.60 6.32 -51.93 -0.33 0.27 16 31 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.09 1.91 5.99 -51.93 -0.31 1.60 16 33 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.07 0.83 6.17 -51.93 -0.32 0.51 16 36 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.08 1.71 7.75 -51.94 -0.40 1.30 16 38 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 39 H 0.40 3.55 8.47 -40.82 -0.35 3.21 16 40 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.11 0.41 8.14 -51.93 -0.42 -0.02 16 46 H 0.14 0.67 8.14 -51.93 -0.42 0.25 16 47 H 0.14 0.51 8.14 -51.93 -0.42 0.08 16 48 H 0.38 9.67 7.80 -40.82 -0.32 9.35 16 49 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 405.00 15.07 6.10 6.10 Total: -1.00 -38.15 405.00 -10.18 -48.33 By element: Atomic # 1 Polarization: 17.57 SS G_CDS: -8.31 Total: 9.26 kcal Atomic # 6 Polarization: -5.07 SS G_CDS: -0.12 Total: -5.20 kcal Atomic # 7 Polarization: -63.76 SS G_CDS: -0.17 Total: -63.93 kcal Atomic # 8 Polarization: -36.67 SS G_CDS: -1.99 Total: -38.66 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Atomic # 16 Polarization: 27.42 SS G_CDS: -0.66 Total: 26.76 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -38.15 -10.18 -48.33 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700711817.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.646 kcal (2) G-P(sol) polarization free energy of solvation -38.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.53 seconds