Wall clock time and date at job start Wed Apr 1 2020 04:54:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 C 1.52999 * 109.47010 * 120.00125 * 2 1 3 5 5 H 1.08995 * 109.47098 * 299.99700 * 4 2 1 6 6 C 1.53004 * 109.47083 * 59.99777 * 4 2 1 7 7 C 1.53003 * 109.46807 * 184.99648 * 6 4 2 8 8 N 1.46501 * 109.46843 * 179.97438 * 7 6 4 9 9 C 1.34780 * 119.99967 * 179.97438 * 8 7 6 10 10 O 1.21282 * 119.99829 * 0.02562 * 9 8 7 11 11 C 1.50696 * 119.99932 * 180.02562 * 9 8 7 12 12 N 1.46499 * 109.46962 * 180.02562 * 11 9 8 13 13 C 1.47067 * 126.30065 * 274.68805 * 12 11 9 14 14 C 1.54312 * 109.96825 * 150.90631 * 13 12 11 15 15 C 1.55606 * 104.19122 * 45.50786 * 14 13 12 16 16 S 1.66998 * 126.30330 * 95.00249 * 12 11 9 17 17 O 1.42100 * 105.13129 * 298.89063 * 16 12 11 18 18 O 1.42099 * 105.13423 * 68.56009 * 16 12 11 19 19 N 1.46498 * 109.47257 * 179.97438 * 4 2 1 20 20 C 1.36943 * 119.99752 * 84.72207 * 19 4 2 21 21 H 1.08002 * 119.99793 * 0.27665 * 20 19 4 22 22 C 1.38811 * 120.00012 * 180.27737 * 20 19 4 23 23 N 1.31624 * 119.99698 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00072 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47294 * 90.00155 * 24 22 20 26 26 H 1.48499 * 109.47218 * 210.00015 * 24 22 20 27 27 H 1.48496 * 109.47166 * 329.99846 * 24 22 20 28 28 H 1.09003 * 109.47062 * 300.00363 * 1 2 3 29 29 H 1.08996 * 109.47077 * 59.99864 * 1 2 3 30 30 H 1.08996 * 109.47248 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.46945 * 239.99919 * 2 1 3 32 32 H 1.09003 * 109.47146 * 179.97438 * 3 2 1 33 33 H 1.08996 * 109.47253 * 300.00028 * 3 2 1 34 34 H 1.08995 * 109.47275 * 60.00121 * 3 2 1 35 35 H 1.08993 * 109.47108 * 304.99684 * 6 4 2 36 36 H 1.08998 * 109.47048 * 65.00196 * 6 4 2 37 37 H 1.08988 * 109.47304 * 300.00405 * 7 6 4 38 38 H 1.08998 * 109.46869 * 60.00439 * 7 6 4 39 39 H 0.96997 * 120.00090 * 0.02562 * 8 7 6 40 40 H 1.09002 * 109.47320 * 300.00084 * 11 9 8 41 41 H 1.08998 * 109.47063 * 60.00511 * 11 9 8 42 42 H 1.09002 * 109.35408 * 271.18615 * 13 12 11 43 43 H 1.08996 * 109.35575 * 30.82697 * 13 12 11 44 44 H 1.09001 * 110.65418 * 286.76808 * 14 13 12 45 45 H 1.09006 * 110.38574 * 164.11195 * 14 13 12 46 46 H 1.09003 * 111.16268 * 204.05808 * 15 14 13 47 47 H 1.08998 * 111.16682 * 79.79804 * 15 14 13 48 48 H 0.97001 * 120.00384 * 265.00562 * 19 4 2 49 49 H 0.96999 * 119.99739 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6767 -0.2075 2.1392 6 6 1.5299 -2.1638 1.2492 7 6 1.9348 -2.8478 2.5566 8 7 1.4459 -4.2289 2.5568 9 6 1.6867 -5.0288 3.6145 10 8 2.3078 -4.6052 4.5662 11 6 1.1843 -6.4495 3.6145 12 7 1.5718 -7.1045 4.8663 13 6 2.8547 -7.7692 5.1403 14 6 3.1833 -7.6805 6.6454 15 6 1.8480 -8.0569 7.3502 16 16 0.6353 -7.2402 6.2423 17 8 0.3822 -5.9033 6.6521 18 8 -0.4175 -8.1267 5.8886 19 7 3.5050 -0.7218 1.2490 20 6 4.1901 0.3552 1.7447 21 1 3.6505 1.2032 2.1400 22 6 5.5782 0.3572 1.7392 23 7 6.2359 -0.6760 1.2570 24 14 6.5129 1.8261 2.4161 25 1 6.7664 1.6263 3.8656 26 1 7.8074 1.9613 1.7012 27 1 5.7078 3.0583 2.2196 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8899 34 1 1.6767 1.9563 0.8899 35 1 0.4437 -2.1650 1.1597 36 1 1.9645 -2.7028 0.4074 37 1 3.0210 -2.8465 2.6461 38 1 1.5001 -2.3088 3.3983 39 1 0.9495 -4.5677 1.7955 40 1 0.0979 -6.4508 3.5253 41 1 1.6186 -6.9885 2.7725 42 1 2.7901 -8.8158 4.8429 43 1 3.6440 -7.2805 4.5691 44 1 3.4840 -6.6678 6.9143 45 1 3.9659 -8.3931 6.9059 46 1 1.8036 -7.6413 8.3569 47 1 1.7021 -9.1370 7.3657 48 1 3.9897 -1.4834 0.8939 49 1 7.2058 -0.6748 1.2535 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700711817.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:54:27 Heat of formation + Delta-G solvation = -123.545519 kcal Electronic energy + Delta-G solvation = -29303.688416 eV Core-core repulsion = 25199.095157 eV Total energy + Delta-G solvation = -4104.593259 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -40.71817 -38.99459 -38.10642 -37.94892 -36.95360 -35.90858 -34.89880 -34.11315 -32.67505 -31.29501 -29.01163 -27.61842 -26.99385 -26.23989 -24.64157 -23.03228 -22.48666 -21.76666 -20.65584 -19.93603 -19.12825 -18.41059 -18.35696 -17.64430 -16.98534 -16.80082 -16.75019 -16.35225 -15.84770 -15.58269 -15.43267 -15.30945 -15.14541 -15.06455 -14.61198 -14.47982 -14.14302 -13.97870 -13.78894 -13.50699 -13.21827 -13.16790 -13.04140 -12.91022 -12.88185 -12.66712 -12.64620 -12.45804 -12.41824 -12.18958 -12.03670 -12.00407 -11.88515 -11.69236 -11.45585 -11.40181 -11.21196 -11.11602 -10.78536 -10.02427 -9.92993 -8.89543 -7.88338 -5.12435 -0.77587 1.44227 1.45426 1.47199 1.53866 1.69700 2.28358 2.59049 2.61641 3.01446 3.37952 3.44768 3.61665 3.85546 3.92167 3.94009 3.96714 4.06526 4.19453 4.30556 4.31285 4.42263 4.48349 4.54685 4.55045 4.70261 4.70628 4.81917 4.83215 4.84560 4.97616 5.00541 5.05685 5.06939 5.17633 5.25118 5.27997 5.38101 5.44782 5.46130 5.53769 5.58336 5.71752 5.80634 6.34748 6.66252 7.37109 7.41315 8.18302 8.40634 9.35335 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.012935 B = 0.002538 C = 0.002243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2164.153449 B =11031.193255 C =12482.558536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.105 4.105 3 C -0.139 4.139 4 C 0.178 3.822 5 H 0.034 0.966 6 C -0.119 4.119 7 C 0.135 3.865 8 N -0.716 5.716 9 C 0.470 3.530 10 O -0.573 6.573 11 C 0.142 3.858 12 N -0.981 5.981 13 C 0.073 3.927 14 C -0.128 4.128 15 C -0.558 4.558 16 S 2.550 3.450 17 O -1.005 7.005 18 O -0.990 6.990 19 N -0.729 5.729 20 C -0.212 4.212 21 H 0.072 0.928 22 C -0.078 4.078 23 N -0.969 5.969 24 Si 0.956 3.044 25 H -0.296 1.296 26 H -0.298 1.298 27 H -0.270 1.270 28 H 0.049 0.951 29 H 0.058 0.942 30 H 0.072 0.928 31 H 0.056 0.944 32 H 0.046 0.954 33 H 0.051 0.949 34 H 0.038 0.962 35 H 0.104 0.896 36 H 0.075 0.925 37 H 0.036 0.964 38 H 0.039 0.961 39 H 0.418 0.582 40 H 0.125 0.875 41 H 0.152 0.848 42 H 0.114 0.886 43 H 0.084 0.916 44 H 0.075 0.925 45 H 0.147 0.853 46 H 0.157 0.843 47 H 0.178 0.822 48 H 0.372 0.628 49 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.791 -20.142 4.419 24.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.126 4.126 3 C -0.196 4.196 4 C 0.069 3.931 5 H 0.052 0.948 6 C -0.157 4.157 7 C 0.011 3.989 8 N -0.370 5.370 9 C 0.255 3.745 10 O -0.451 6.451 11 C 0.013 3.987 12 N -0.821 5.821 13 C -0.052 4.052 14 C -0.167 4.167 15 C -0.693 4.693 16 S 2.652 3.348 17 O -0.994 6.994 18 O -0.980 6.980 19 N -0.369 5.369 20 C -0.344 4.344 21 H 0.090 0.910 22 C -0.270 4.270 23 N -0.621 5.621 24 Si 0.786 3.214 25 H -0.224 1.224 26 H -0.224 1.224 27 H -0.195 1.195 28 H 0.068 0.932 29 H 0.077 0.923 30 H 0.091 0.909 31 H 0.074 0.926 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.057 0.943 35 H 0.122 0.878 36 H 0.094 0.906 37 H 0.055 0.945 38 H 0.058 0.942 39 H 0.256 0.744 40 H 0.143 0.857 41 H 0.169 0.831 42 H 0.132 0.868 43 H 0.103 0.897 44 H 0.093 0.907 45 H 0.165 0.835 46 H 0.175 0.825 47 H 0.196 0.804 48 H 0.204 0.796 49 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -13.358 -19.304 5.210 24.046 hybrid contribution 1.672 0.862 0.100 1.884 sum -11.686 -18.442 5.310 22.469 Atomic orbital electron populations 1.21858 0.93753 1.02454 1.01600 1.21632 0.95997 0.96156 0.98819 1.21770 1.01585 0.96419 0.99827 1.20442 0.83236 0.93823 0.95570 0.94801 1.21992 1.02555 0.95431 0.95740 1.21021 0.98137 0.81518 0.98249 1.45918 1.57697 1.12484 1.20908 1.22299 0.79931 0.90069 0.82173 1.90720 1.41692 1.76695 1.35970 1.21064 1.02382 0.87351 0.87867 1.56815 1.28765 1.69311 1.27185 1.22421 0.86421 0.99510 0.96830 1.22814 0.96825 1.05209 0.91860 1.30645 1.10629 1.15022 1.12968 1.06811 0.75969 0.74922 0.77137 1.93603 1.85266 1.37918 1.82649 1.93566 1.54785 1.67188 1.82466 1.42595 1.01103 1.19649 1.73528 1.19467 0.88990 0.96397 1.29543 0.91043 1.25349 0.97562 1.00128 1.03936 1.69790 1.06244 1.31714 1.54347 0.85383 0.78275 0.80357 0.77338 1.22359 1.22434 1.19527 0.93169 0.92304 0.90929 0.92556 0.93506 0.93039 0.94310 0.87789 0.90611 0.94501 0.94247 0.74435 0.85710 0.83072 0.86771 0.89705 0.90664 0.83492 0.82480 0.80445 0.79598 0.94493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.31 8.85 71.98 0.64 -2.68 16 2 C -0.10 -3.40 2.69 -10.79 -0.03 -3.42 16 3 C -0.14 -5.01 8.26 71.98 0.59 -4.42 16 4 C 0.18 6.58 2.02 44.99 0.09 6.68 16 5 H 0.03 1.36 8.08 -2.39 -0.02 1.34 16 6 C -0.12 -3.40 4.65 30.60 0.14 -3.25 16 7 C 0.14 4.58 5.56 86.38 0.48 5.06 16 8 N -0.72 -18.10 5.56 -463.07 -2.57 -20.67 16 9 C 0.47 13.52 7.90 87.66 0.69 14.21 16 10 O -0.57 -23.06 16.43 -3.04 -0.05 -23.11 16 11 C 0.14 2.53 6.83 85.63 0.59 3.11 16 12 N -0.98 -18.65 2.80 -516.11 -1.45 -20.09 16 13 C 0.07 0.91 6.83 86.72 0.59 1.50 16 14 C -0.13 -1.31 6.81 31.94 0.22 -1.10 16 15 C -0.56 -5.08 7.51 72.88 0.55 -4.54 16 16 S 2.55 53.46 6.17 -56.49 -0.35 53.11 16 17 O -1.00 -32.82 18.13 -127.77 -2.32 -35.14 16 18 O -0.99 -24.67 18.13 -127.77 -2.32 -26.98 16 19 N -0.73 -35.21 4.46 -322.94 -1.44 -36.65 16 20 C -0.21 -11.54 7.55 84.03 0.63 -10.90 16 21 H 0.07 3.82 7.38 -2.91 -0.02 3.80 16 22 C -0.08 -4.51 5.50 84.86 0.47 -4.04 16 23 N -0.97 -59.56 13.06 21.65 0.28 -59.28 16 24 Si 0.96 47.33 29.55 68.60 2.03 49.36 16 25 H -0.30 -14.74 7.11 99.48 0.71 -14.03 16 26 H -0.30 -14.83 7.11 99.48 0.71 -14.13 16 27 H -0.27 -12.66 7.11 99.48 0.71 -11.96 16 28 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.07 1.41 6.32 -2.39 -0.02 1.40 16 31 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.05 2.06 5.99 -2.39 -0.01 2.05 16 33 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.10 2.24 6.17 -2.39 -0.01 2.22 16 36 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 37 H 0.04 1.60 7.75 -2.39 -0.02 1.58 16 38 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.42 6.56 8.47 -92.71 -0.79 5.78 16 40 H 0.13 1.74 8.14 -2.39 -0.02 1.72 16 41 H 0.15 1.42 8.14 -2.39 -0.02 1.40 16 42 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 43 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 44 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 45 H 0.15 0.47 8.14 -2.38 -0.02 0.45 16 46 H 0.16 1.06 8.14 -2.39 -0.02 1.04 16 47 H 0.18 0.39 8.14 -2.39 -0.02 0.37 16 48 H 0.37 19.48 7.80 -92.71 -0.72 18.76 16 49 H 0.25 14.87 8.31 -92.71 -0.77 14.10 16 Total: -1.00 -90.55 405.00 -3.08 -93.63 By element: Atomic # 1 Polarization: 30.17 SS G_CDS: -0.55 Total: 29.62 kcal Atomic # 6 Polarization: -9.44 SS G_CDS: 5.65 Total: -3.78 kcal Atomic # 7 Polarization: -131.52 SS G_CDS: -5.18 Total: -136.70 kcal Atomic # 8 Polarization: -80.55 SS G_CDS: -4.68 Total: -85.23 kcal Atomic # 14 Polarization: 47.33 SS G_CDS: 2.03 Total: 49.36 kcal Atomic # 16 Polarization: 53.46 SS G_CDS: -0.35 Total: 53.11 kcal Total: -90.55 -3.08 -93.63 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700711817.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.916 kcal (2) G-P(sol) polarization free energy of solvation -90.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds