Wall clock time and date at job start Wed Apr 1 2020 04:39:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86806 * 120.00043 * 2 1 4 4 H 1.48500 * 109.46925 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.46793 * 300.00166 * 3 2 1 6 6 H 1.48498 * 109.46814 * 60.00066 * 3 2 1 7 7 C 1.38813 * 120.00004 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99890 * 163.07876 * 7 2 1 9 9 N 1.36938 * 119.99936 * 343.08512 * 7 2 1 10 10 C 1.46931 * 120.62972 * 151.83343 * 9 7 2 11 11 C 1.53189 * 108.89061 * 126.29441 * 10 9 7 12 12 C 1.53349 * 109.15350 * 54.57922 * 11 10 9 13 13 C 1.52989 * 109.42090 * 178.67324 * 12 11 10 14 14 C 1.53000 * 109.47021 * 295.12340 * 13 12 11 15 15 N 1.46510 * 109.47161 * 179.97438 * 14 13 12 16 16 C 1.34773 * 119.99824 * 179.97438 * 15 14 13 17 17 O 1.21280 * 120.00339 * 0.02562 * 16 15 14 18 18 C 1.50709 * 119.99690 * 180.02562 * 16 15 14 19 19 C 1.53000 * 109.47026 * 180.02562 * 18 16 15 20 20 C 1.52996 * 109.47281 * 179.97438 * 19 18 16 21 21 S 1.81390 * 109.47326 * 180.02562 * 20 19 18 22 22 N 1.65600 * 104.44993 * 180.02562 * 21 20 19 23 23 O 1.42103 * 110.54439 * 291.62529 * 21 20 19 24 24 O 1.42102 * 110.54490 * 68.37498 * 21 20 19 25 25 C 1.53047 * 109.60312 * 298.71070 * 12 11 10 26 26 C 1.46927 * 120.63023 * 331.80303 * 9 7 2 27 27 H 0.96996 * 119.99787 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.58339 * 246.15009 * 10 9 7 29 29 H 1.09003 * 109.58852 * 6.43598 * 10 9 7 30 30 H 1.09001 * 109.49505 * 174.65848 * 11 10 9 31 31 H 1.08994 * 109.50061 * 294.75020 * 11 10 9 32 32 H 1.08997 * 109.42274 * 58.74421 * 12 11 10 33 33 H 1.09000 * 109.47734 * 55.12337 * 13 12 11 34 34 H 1.09008 * 109.47484 * 175.12574 * 13 12 11 35 35 H 1.08995 * 109.47125 * 299.99647 * 14 13 12 36 36 H 1.08999 * 109.47135 * 60.00564 * 14 13 12 37 37 H 0.96999 * 119.99621 * 0.02562 * 15 14 13 38 38 H 1.08995 * 109.46901 * 299.99851 * 18 16 15 39 39 H 1.08999 * 109.46682 * 60.00353 * 18 16 15 40 40 H 1.09000 * 109.47357 * 300.00362 * 19 18 16 41 41 H 1.08998 * 109.46885 * 59.99849 * 19 18 16 42 42 H 1.09000 * 109.47225 * 300.00447 * 20 19 18 43 43 H 1.09000 * 109.46854 * 59.99781 * 20 19 18 44 44 H 0.97005 * 119.99887 * 150.00664 * 22 21 20 45 45 H 0.96999 * 120.00034 * 329.99845 * 22 21 20 46 46 H 1.09000 * 109.49464 * 301.42009 * 25 12 11 47 47 H 1.08999 * 109.52117 * 181.33762 * 25 12 11 48 48 H 1.09002 * 109.58255 * 353.42549 * 26 9 7 49 49 H 1.09000 * 109.58150 * 113.70283 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0552 -1.2225 -0.2717 9 7 1.3700 -2.3623 0.3461 10 6 1.8140 -3.6530 -0.1978 11 6 2.0709 -4.6185 0.9634 12 6 0.8133 -4.7005 1.8372 13 6 1.0518 -5.6888 2.9804 14 6 1.2431 -7.0946 2.4077 15 7 1.4721 -8.0409 3.5025 16 6 1.6672 -9.3472 3.2343 17 8 1.6536 -9.7393 2.0867 18 6 1.9022 -10.3207 4.3605 19 6 2.0935 -11.7265 3.7878 20 6 2.3327 -12.7148 4.9310 21 16 2.5604 -14.3813 4.2520 22 7 2.8063 -15.3388 5.5806 23 8 1.3454 -14.8627 3.6939 24 8 3.7814 -14.4630 3.5297 25 6 0.4986 -3.3187 2.4150 26 6 0.2264 -2.3400 1.2683 27 1 -0.4849 0.8400 0.0004 28 1 1.0401 -4.0610 -0.8480 29 1 2.7331 -3.5130 -0.7669 30 1 2.3090 -5.6064 0.5691 31 1 2.9059 -4.2542 1.5616 32 1 -0.0269 -5.0410 1.2321 33 1 1.9450 -5.3969 3.5328 34 1 0.1922 -5.6834 3.6507 35 1 0.3499 -7.3866 1.8555 36 1 2.1027 -7.1001 1.7376 37 1 1.4826 -7.7273 4.4204 38 1 2.7956 -10.0289 4.9125 39 1 1.0427 -10.3150 5.0309 40 1 1.2004 -12.0186 3.2355 41 1 2.9531 -11.7319 3.1176 42 1 3.2261 -12.4226 5.4830 43 1 1.4734 -12.7095 5.6016 44 1 2.5312 -16.2689 5.5657 45 1 3.2255 -14.9696 6.3736 46 1 1.3485 -2.9667 2.9997 47 1 -0.3815 -3.3832 3.0548 48 1 0.0994 -1.3342 1.6687 49 1 -0.6773 -2.6386 0.7370 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714329640.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:12 Heat of formation + Delta-G solvation = -116.651887 kcal Electronic energy + Delta-G solvation = -27677.835555 eV Core-core repulsion = 23573.541226 eV Total energy + Delta-G solvation = -4104.294329 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.00766 -38.02821 -37.48407 -36.39503 -35.69406 -35.02816 -33.74079 -33.57834 -31.34653 -30.09714 -29.41848 -28.07790 -25.16960 -23.46880 -22.70972 -21.88810 -20.95776 -20.32411 -19.93259 -19.07565 -18.26998 -17.80071 -17.22981 -16.81475 -16.77044 -16.24519 -15.95104 -15.64198 -15.14148 -14.82406 -14.26487 -14.12105 -13.85927 -13.48819 -13.44048 -13.27836 -12.93707 -12.81033 -12.64711 -12.55727 -12.48839 -12.46147 -12.41660 -12.20834 -11.58712 -11.52655 -11.34028 -11.32285 -11.22471 -10.92568 -10.89300 -10.70709 -10.46052 -10.23506 -10.12798 -10.05301 -9.84341 -9.46052 -9.38221 -9.16732 -8.45229 -6.63409 -5.76941 -3.19041 -0.29318 2.34387 2.40505 2.91148 3.20634 3.37227 3.45194 3.47579 3.70812 3.90049 4.27838 4.30379 4.51102 4.64729 4.67809 4.85528 4.92182 5.02930 5.04282 5.28547 5.33639 5.39194 5.39458 5.46430 5.51639 5.60314 5.74331 5.79694 6.00646 6.02371 6.11857 6.21981 6.31587 6.38617 6.46665 6.56748 6.65039 6.72137 6.84329 6.87995 7.04051 7.27317 7.40174 7.68466 7.81683 7.99859 8.47770 9.24135 9.87918 10.45101 11.31528 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.040830 B = 0.001372 C = 0.001362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.602187 B =20409.264666 C =20560.011532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.001 3.999 3 Si 0.901 3.099 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.289 1.289 7 C -0.250 4.250 8 H 0.065 0.935 9 N -0.593 5.593 10 C 0.144 3.856 11 C -0.130 4.130 12 C -0.075 4.075 13 C -0.124 4.124 14 C 0.115 3.885 15 N -0.729 5.729 16 C 0.506 3.494 17 O -0.538 6.538 18 C -0.133 4.133 19 C -0.099 4.099 20 C -0.625 4.625 21 S 2.616 3.384 22 N -1.253 6.253 23 O -0.960 6.960 24 O -0.958 6.958 25 C -0.134 4.134 26 C 0.170 3.830 27 H 0.252 0.748 28 H 0.016 0.984 29 H 0.052 0.948 30 H 0.051 0.949 31 H 0.057 0.943 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.067 0.933 36 H 0.073 0.927 37 H 0.400 0.600 38 H 0.098 0.902 39 H 0.098 0.902 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.135 0.865 43 H 0.138 0.862 44 H 0.420 0.580 45 H 0.412 0.588 46 H 0.053 0.947 47 H 0.047 0.953 48 H 0.086 0.914 49 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.515 -27.127 18.618 33.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.198 4.198 3 Si 0.731 3.269 4 H -0.203 1.203 5 H -0.217 1.217 6 H -0.216 1.216 7 C -0.380 4.380 8 H 0.083 0.917 9 N -0.316 5.316 10 C 0.017 3.983 11 C -0.169 4.169 12 C -0.094 4.094 13 C -0.162 4.162 14 C -0.008 4.008 15 N -0.381 5.381 16 C 0.292 3.708 17 O -0.415 6.415 18 C -0.174 4.174 19 C -0.139 4.139 20 C -0.755 4.755 21 S 2.707 3.293 22 N -0.925 5.925 23 O -0.949 6.949 24 O -0.947 6.947 25 C -0.173 4.173 26 C 0.044 3.956 27 H 0.062 0.938 28 H 0.034 0.966 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.091 0.909 37 H 0.233 0.767 38 H 0.117 0.883 39 H 0.116 0.884 40 H 0.109 0.891 41 H 0.109 0.891 42 H 0.153 0.847 43 H 0.156 0.844 44 H 0.250 0.750 45 H 0.238 0.762 46 H 0.072 0.928 47 H 0.065 0.935 48 H 0.104 0.896 49 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 3.362 -27.446 16.662 32.283 hybrid contribution 0.390 1.320 1.539 2.065 sum 3.752 -26.126 18.201 32.061 Atomic orbital electron populations 1.70046 1.05259 1.25293 1.54223 1.25041 0.95271 0.98375 1.01063 0.86244 0.79381 0.84047 0.77246 1.20282 1.21744 1.21619 1.19241 0.92546 0.84887 1.41315 0.91735 1.44058 1.35913 1.01518 1.50074 1.20900 0.97502 0.86976 0.92873 1.22171 0.97019 0.98911 0.98781 1.21030 0.98502 0.94829 0.95080 1.21903 1.01903 0.93127 0.99312 1.21573 1.02113 0.87917 0.89199 1.46118 1.73274 1.07753 1.10937 1.20605 0.76611 0.83024 0.90573 1.90748 1.50262 1.78188 1.22328 1.21607 1.04615 0.93548 0.97614 1.21060 1.05255 0.92632 0.94916 1.30510 1.12054 1.21966 1.10924 1.04744 0.74744 0.76254 0.73601 1.53257 1.79616 1.25230 1.34382 1.93626 1.47310 1.78054 1.75950 1.93644 1.46334 1.85403 1.69292 1.22211 0.99856 0.95374 0.99839 1.20761 0.88643 0.98127 0.88034 0.93753 0.96570 0.92993 0.93041 0.92466 0.91684 0.91603 0.91815 0.91461 0.90905 0.76658 0.88344 0.88351 0.89128 0.89134 0.84664 0.84406 0.74990 0.76166 0.92783 0.93477 0.89623 0.96533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.32 11.20 55.49 0.62 -25.70 16 2 C 0.00 0.02 4.92 -17.43 -0.09 -0.06 16 3 Si 0.90 21.72 29.59 -169.99 -5.03 16.69 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 7 C -0.25 -6.91 9.58 -15.06 -0.14 -7.06 16 8 H 0.06 1.76 7.89 -52.48 -0.41 1.35 16 9 N -0.59 -14.89 2.99 -172.32 -0.52 -15.41 16 10 C 0.14 3.05 6.50 -3.71 -0.02 3.02 16 11 C -0.13 -2.20 5.16 -26.45 -0.14 -2.33 16 12 C -0.08 -1.17 2.15 -90.42 -0.19 -1.37 16 13 C -0.12 -1.44 4.80 -26.74 -0.13 -1.57 16 14 C 0.11 1.32 5.43 -4.04 -0.02 1.30 16 15 N -0.73 -6.53 5.56 -60.29 -0.33 -6.87 16 16 C 0.51 5.11 7.83 -10.98 -0.09 5.02 16 17 O -0.54 -7.95 15.98 5.56 0.09 -7.86 16 18 C -0.13 -0.72 5.70 -27.88 -0.16 -0.87 16 19 C -0.10 -0.63 4.51 -26.73 -0.12 -0.75 16 20 C -0.62 -1.64 6.17 37.16 0.23 -1.41 16 21 S 2.62 14.62 5.97 -107.50 -0.64 13.97 16 22 N -1.25 -2.47 9.36 60.35 0.57 -1.91 16 23 O -0.96 -9.42 18.10 -57.54 -1.04 -10.46 16 24 O -0.96 -9.63 18.10 -57.54 -1.04 -10.67 16 25 C -0.13 -2.42 5.36 -26.61 -0.14 -2.57 16 26 C 0.17 4.02 5.30 -3.71 -0.02 4.00 16 27 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 28 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.05 1.09 7.93 -51.93 -0.41 0.68 16 30 H 0.05 0.77 6.52 -51.93 -0.34 0.44 16 31 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 32 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.06 0.67 8.14 -51.92 -0.42 0.24 16 35 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.07 0.95 6.53 -51.93 -0.34 0.61 16 37 H 0.40 2.32 8.47 -40.82 -0.35 1.97 16 38 H 0.10 0.31 8.14 -51.93 -0.42 -0.12 16 39 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 40 H 0.09 0.67 8.10 -51.93 -0.42 0.25 16 41 H 0.09 0.68 8.10 -51.93 -0.42 0.26 16 42 H 0.14 -0.01 8.14 -51.92 -0.42 -0.43 16 43 H 0.14 0.03 8.14 -51.92 -0.42 -0.39 16 44 H 0.42 0.63 8.96 -34.47 -0.31 0.32 16 45 H 0.41 -0.43 8.96 -34.47 -0.31 -0.74 16 46 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 47 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 48 H 0.09 2.27 6.06 -51.93 -0.31 1.96 16 49 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 403.29 15.07 6.08 6.08 Total: -1.00 -39.80 403.29 -10.54 -50.34 By element: Atomic # 1 Polarization: 4.70 SS G_CDS: -8.25 Total: -3.56 kcal Atomic # 6 Polarization: -3.61 SS G_CDS: -1.03 Total: -4.65 kcal Atomic # 7 Polarization: -50.22 SS G_CDS: 0.34 Total: -49.88 kcal Atomic # 8 Polarization: -27.00 SS G_CDS: -1.99 Total: -28.99 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.03 Total: 16.69 kcal Atomic # 16 Polarization: 14.62 SS G_CDS: -0.64 Total: 13.97 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -39.80 -10.54 -50.34 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714329640.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.313 kcal (2) G-P(sol) polarization free energy of solvation -39.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds