Wall clock time and date at job start Wed Apr 1 2020 04:39:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86806 * 120.00043 * 2 1 4 4 H 1.48500 * 109.46925 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.46793 * 300.00166 * 3 2 1 6 6 H 1.48498 * 109.46814 * 60.00066 * 3 2 1 7 7 C 1.38813 * 120.00004 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99890 * 163.07876 * 7 2 1 9 9 N 1.36938 * 119.99936 * 343.08512 * 7 2 1 10 10 C 1.46931 * 120.62972 * 151.83343 * 9 7 2 11 11 C 1.53189 * 108.89061 * 126.29441 * 10 9 7 12 12 C 1.53349 * 109.15350 * 54.57922 * 11 10 9 13 13 C 1.52989 * 109.42090 * 178.67324 * 12 11 10 14 14 C 1.53000 * 109.47021 * 295.12340 * 13 12 11 15 15 N 1.46510 * 109.47161 * 179.97438 * 14 13 12 16 16 C 1.34773 * 119.99824 * 179.97438 * 15 14 13 17 17 O 1.21280 * 120.00339 * 0.02562 * 16 15 14 18 18 C 1.50709 * 119.99690 * 180.02562 * 16 15 14 19 19 C 1.53000 * 109.47026 * 180.02562 * 18 16 15 20 20 C 1.52996 * 109.47281 * 179.97438 * 19 18 16 21 21 S 1.81390 * 109.47326 * 180.02562 * 20 19 18 22 22 N 1.65600 * 104.44993 * 180.02562 * 21 20 19 23 23 O 1.42103 * 110.54439 * 291.62529 * 21 20 19 24 24 O 1.42102 * 110.54490 * 68.37498 * 21 20 19 25 25 C 1.53047 * 109.60312 * 298.71070 * 12 11 10 26 26 C 1.46927 * 120.63023 * 331.80303 * 9 7 2 27 27 H 0.96996 * 119.99787 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.58339 * 246.15009 * 10 9 7 29 29 H 1.09003 * 109.58852 * 6.43598 * 10 9 7 30 30 H 1.09001 * 109.49505 * 174.65848 * 11 10 9 31 31 H 1.08994 * 109.50061 * 294.75020 * 11 10 9 32 32 H 1.08997 * 109.42274 * 58.74421 * 12 11 10 33 33 H 1.09000 * 109.47734 * 55.12337 * 13 12 11 34 34 H 1.09008 * 109.47484 * 175.12574 * 13 12 11 35 35 H 1.08995 * 109.47125 * 299.99647 * 14 13 12 36 36 H 1.08999 * 109.47135 * 60.00564 * 14 13 12 37 37 H 0.96999 * 119.99621 * 0.02562 * 15 14 13 38 38 H 1.08995 * 109.46901 * 299.99851 * 18 16 15 39 39 H 1.08999 * 109.46682 * 60.00353 * 18 16 15 40 40 H 1.09000 * 109.47357 * 300.00362 * 19 18 16 41 41 H 1.08998 * 109.46885 * 59.99849 * 19 18 16 42 42 H 1.09000 * 109.47225 * 300.00447 * 20 19 18 43 43 H 1.09000 * 109.46854 * 59.99781 * 20 19 18 44 44 H 0.97005 * 119.99887 * 150.00664 * 22 21 20 45 45 H 0.96999 * 120.00034 * 329.99845 * 22 21 20 46 46 H 1.09000 * 109.49464 * 301.42009 * 25 12 11 47 47 H 1.08999 * 109.52117 * 181.33762 * 25 12 11 48 48 H 1.09002 * 109.58255 * 353.42549 * 26 9 7 49 49 H 1.09000 * 109.58150 * 113.70283 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0552 -1.2225 -0.2717 9 7 1.3700 -2.3623 0.3461 10 6 1.8140 -3.6530 -0.1978 11 6 2.0709 -4.6185 0.9634 12 6 0.8133 -4.7005 1.8372 13 6 1.0518 -5.6888 2.9804 14 6 1.2431 -7.0946 2.4077 15 7 1.4721 -8.0409 3.5025 16 6 1.6672 -9.3472 3.2343 17 8 1.6536 -9.7393 2.0867 18 6 1.9022 -10.3207 4.3605 19 6 2.0935 -11.7265 3.7878 20 6 2.3327 -12.7148 4.9310 21 16 2.5604 -14.3813 4.2520 22 7 2.8063 -15.3388 5.5806 23 8 1.3454 -14.8627 3.6939 24 8 3.7814 -14.4630 3.5297 25 6 0.4986 -3.3187 2.4150 26 6 0.2264 -2.3400 1.2683 27 1 -0.4849 0.8400 0.0004 28 1 1.0401 -4.0610 -0.8480 29 1 2.7331 -3.5130 -0.7669 30 1 2.3090 -5.6064 0.5691 31 1 2.9059 -4.2542 1.5616 32 1 -0.0269 -5.0410 1.2321 33 1 1.9450 -5.3969 3.5328 34 1 0.1922 -5.6834 3.6507 35 1 0.3499 -7.3866 1.8555 36 1 2.1027 -7.1001 1.7376 37 1 1.4826 -7.7273 4.4204 38 1 2.7956 -10.0289 4.9125 39 1 1.0427 -10.3150 5.0309 40 1 1.2004 -12.0186 3.2355 41 1 2.9531 -11.7319 3.1176 42 1 3.2261 -12.4226 5.4830 43 1 1.4734 -12.7095 5.6016 44 1 2.5312 -16.2689 5.5657 45 1 3.2255 -14.9696 6.3736 46 1 1.3485 -2.9667 2.9997 47 1 -0.3815 -3.3832 3.0548 48 1 0.0994 -1.3342 1.6687 49 1 -0.6773 -2.6386 0.7370 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714329640.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:11 Heat of formation + Delta-G solvation = -150.254123 kcal Electronic energy + Delta-G solvation = -27679.292657 eV Core-core repulsion = 23573.541226 eV Total energy + Delta-G solvation = -4105.751431 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.80197 -39.50294 -38.06393 -36.97278 -36.78197 -35.62124 -35.05023 -33.97593 -33.05760 -31.62743 -30.50639 -29.04203 -26.77172 -24.74030 -23.79972 -23.14888 -22.14678 -21.26422 -20.58726 -20.33933 -18.70048 -18.68701 -18.17933 -17.79893 -17.27082 -16.97568 -16.83283 -16.69235 -16.18809 -15.88186 -15.64798 -15.29741 -15.09395 -14.88396 -14.79220 -14.34207 -14.01454 -13.96101 -13.61458 -13.26280 -13.15158 -13.11956 -13.03735 -13.00119 -12.94426 -12.92805 -12.80155 -12.57588 -12.23411 -12.12751 -11.91827 -11.90886 -11.81089 -11.72162 -11.52174 -11.19180 -11.11026 -10.98235 -10.77669 -10.53603 -10.03374 -8.66801 -7.87369 -5.33133 -0.68486 1.45282 1.46775 1.57849 1.68654 2.01189 2.26486 2.50984 2.80903 3.26747 3.43479 3.50141 3.72357 3.85983 3.87971 3.90876 3.93854 4.09291 4.22310 4.32146 4.42187 4.45474 4.58797 4.62946 4.67494 4.71988 4.75688 4.80684 4.90083 4.95008 5.03887 5.07570 5.10353 5.12910 5.27919 5.32780 5.36534 5.40879 5.47608 5.50572 5.56861 5.67466 5.81568 6.39683 6.43433 6.62343 7.15653 7.32756 7.87586 8.39204 9.18755 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.040830 B = 0.001372 C = 0.001362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.602187 B =20409.264666 C =20560.011532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.052 4.052 3 Si 0.967 3.033 4 H -0.267 1.267 5 H -0.293 1.293 6 H -0.287 1.287 7 C -0.263 4.263 8 H 0.064 0.936 9 N -0.611 5.611 10 C 0.137 3.863 11 C -0.117 4.117 12 C -0.072 4.072 13 C -0.106 4.106 14 C 0.120 3.880 15 N -0.717 5.717 16 C 0.497 3.503 17 O -0.596 6.596 18 C -0.123 4.123 19 C -0.114 4.114 20 C -0.595 4.595 21 S 2.616 3.384 22 N -1.237 6.237 23 O -1.012 7.012 24 O -1.014 7.014 25 C -0.119 4.119 26 C 0.173 3.827 27 H 0.250 0.750 28 H 0.007 0.993 29 H 0.047 0.953 30 H 0.072 0.928 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.051 0.949 36 H 0.056 0.944 37 H 0.419 0.581 38 H 0.134 0.866 39 H 0.134 0.866 40 H 0.069 0.931 41 H 0.069 0.931 42 H 0.176 0.824 43 H 0.175 0.825 44 H 0.424 0.576 45 H 0.429 0.571 46 H 0.054 0.946 47 H 0.071 0.929 48 H 0.051 0.949 49 H -0.010 1.010 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.475 -27.728 22.491 35.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.247 4.247 3 Si 0.796 3.204 4 H -0.191 1.191 5 H -0.220 1.220 6 H -0.214 1.214 7 C -0.394 4.394 8 H 0.082 0.918 9 N -0.335 5.335 10 C 0.011 3.989 11 C -0.155 4.155 12 C -0.091 4.091 13 C -0.144 4.144 14 C -0.004 4.004 15 N -0.369 5.369 16 C 0.285 3.715 17 O -0.477 6.477 18 C -0.163 4.163 19 C -0.154 4.154 20 C -0.728 4.728 21 S 2.712 3.288 22 N -0.914 5.914 23 O -1.001 7.001 24 O -1.003 7.003 25 C -0.158 4.158 26 C 0.048 3.952 27 H 0.059 0.941 28 H 0.025 0.975 29 H 0.066 0.934 30 H 0.091 0.909 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.098 0.902 34 H 0.104 0.896 35 H 0.070 0.930 36 H 0.074 0.926 37 H 0.257 0.743 38 H 0.152 0.848 39 H 0.152 0.848 40 H 0.088 0.912 41 H 0.088 0.912 42 H 0.193 0.807 43 H 0.193 0.807 44 H 0.255 0.745 45 H 0.259 0.741 46 H 0.073 0.927 47 H 0.089 0.911 48 H 0.069 0.931 49 H 0.009 0.991 Dipole moment (debyes) X Y Z Total from point charges 4.351 -28.102 20.583 35.104 hybrid contribution 0.067 1.526 0.300 1.557 sum 4.418 -26.576 20.883 34.087 Atomic orbital electron populations 1.70202 1.06710 1.25754 1.55576 1.25810 0.96050 1.01515 1.01298 0.85207 0.78594 0.79800 0.76846 1.19137 1.22013 1.21385 1.19563 0.92773 0.86194 1.40841 0.91846 1.44343 1.36066 1.02190 1.50899 1.21077 0.96773 0.86450 0.94587 1.22017 0.97764 0.98508 0.97256 1.20951 0.97407 0.94495 0.96263 1.21681 1.03517 0.91525 0.97667 1.21311 1.00728 0.88543 0.89832 1.45959 1.72482 1.07179 1.11305 1.21549 0.75200 0.83681 0.91065 1.90734 1.52781 1.79115 1.25046 1.21686 1.07699 0.90861 0.96072 1.21119 1.03633 0.94599 0.96056 1.30245 1.15706 1.16845 1.09959 1.04286 0.72892 0.77726 0.73936 1.52815 1.79538 1.25117 1.33917 1.93560 1.48783 1.79940 1.77842 1.93583 1.48129 1.86825 1.71728 1.22004 1.00920 0.95168 0.97739 1.20627 0.87465 0.97845 0.89296 0.94127 0.97537 0.93423 0.90909 0.92383 0.92541 0.90182 0.89633 0.93030 0.92582 0.74342 0.84839 0.84825 0.91205 0.91216 0.80667 0.80688 0.74530 0.74125 0.92738 0.91057 0.93056 0.99142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.17 11.20 21.65 0.24 -55.93 16 2 C -0.05 -2.92 4.92 84.86 0.42 -2.50 16 3 Si 0.97 45.24 29.59 68.60 2.03 47.27 16 4 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 5 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 6 H -0.29 -13.23 7.11 99.48 0.71 -12.53 16 7 C -0.26 -14.81 9.58 84.03 0.81 -14.00 16 8 H 0.06 3.50 7.89 -2.91 -0.02 3.47 16 9 N -0.61 -31.34 2.99 -699.08 -2.09 -33.43 16 10 C 0.14 5.85 6.50 86.36 0.56 6.41 16 11 C -0.12 -3.81 5.16 30.77 0.16 -3.65 16 12 C -0.07 -2.12 2.15 -10.66 -0.02 -2.14 16 13 C -0.11 -2.09 4.80 30.59 0.15 -1.94 16 14 C 0.12 2.50 5.43 86.38 0.47 2.97 16 15 N -0.72 -10.48 5.56 -463.04 -2.57 -13.06 16 16 C 0.50 8.90 7.83 87.66 0.69 9.59 16 17 O -0.60 -17.59 15.98 -3.03 -0.05 -17.63 16 18 C -0.12 -0.80 5.70 29.85 0.17 -0.63 16 19 C -0.11 -1.22 4.51 30.59 0.14 -1.08 16 20 C -0.59 -0.87 6.17 71.98 0.44 -0.43 16 21 S 2.62 27.60 5.97 -56.49 -0.34 27.27 16 22 N -1.24 -2.67 9.36 37.02 0.35 -2.33 16 23 O -1.01 -20.50 18.10 -127.65 -2.31 -22.81 16 24 O -1.01 -21.04 18.10 -127.65 -2.31 -23.35 16 25 C -0.12 -4.17 5.36 30.67 0.16 -4.01 16 26 C 0.17 8.37 5.30 86.36 0.46 8.83 16 27 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 28 H 0.01 0.29 8.14 -2.39 -0.02 0.28 16 29 H 0.05 2.02 7.93 -2.39 -0.02 2.01 16 30 H 0.07 2.09 6.52 -2.39 -0.02 2.07 16 31 H 0.06 1.90 8.14 -2.39 -0.02 1.89 16 32 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.09 1.39 8.14 -2.38 -0.02 1.37 16 35 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.06 1.37 6.53 -2.39 -0.02 1.35 16 37 H 0.42 2.83 8.47 -92.71 -0.79 2.05 16 38 H 0.13 0.01 8.14 -2.39 -0.02 -0.01 16 39 H 0.13 0.01 8.14 -2.39 -0.02 -0.01 16 40 H 0.07 1.03 8.10 -2.39 -0.02 1.01 16 41 H 0.07 1.03 8.10 -2.39 -0.02 1.01 16 42 H 0.18 -1.03 8.14 -2.39 -0.02 -1.05 16 43 H 0.18 -0.91 8.14 -2.39 -0.02 -0.93 16 44 H 0.42 0.76 8.96 -96.74 -0.87 -0.10 16 45 H 0.43 -2.18 8.96 -96.75 -0.87 -3.04 16 46 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 47 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 48 H 0.05 2.81 6.06 -2.39 -0.01 2.80 16 49 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 Total: -1.00 -93.61 403.29 -4.01 -97.61 By element: Atomic # 1 Polarization: 0.53 SS G_CDS: -1.55 Total: -1.02 kcal Atomic # 6 Polarization: -7.18 SS G_CDS: 4.60 Total: -2.59 kcal Atomic # 7 Polarization: -100.66 SS G_CDS: -4.08 Total: -104.74 kcal Atomic # 8 Polarization: -59.13 SS G_CDS: -4.67 Total: -63.80 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Atomic # 16 Polarization: 27.60 SS G_CDS: -0.34 Total: 27.27 kcal Total: -93.61 -4.01 -97.61 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714329640.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.641 kcal (2) G-P(sol) polarization free energy of solvation -93.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds