Wall clock time and date at job start Wed Apr 1 2020 05:08:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46952 * 2 1 4 4 C 1.52994 * 109.47398 * 120.00339 * 2 1 3 5 5 H 1.09007 * 109.46901 * 57.31404 * 4 2 1 6 6 N 1.46500 * 109.47292 * 297.31634 * 4 2 1 7 7 S 1.65599 * 120.00016 * 125.32540 * 6 4 2 8 8 C 1.81400 * 104.45016 * 63.30171 * 7 6 4 9 9 O 1.42102 * 104.27159 * 179.36959 * 7 6 4 10 10 O 1.42095 * 104.27966 * 307.22890 * 7 6 4 11 11 C 1.50702 * 109.47109 * 177.30860 * 4 2 1 12 12 O 1.21284 * 119.99481 * 96.97942 * 11 4 2 13 13 N 1.34772 * 120.00570 * 276.97711 * 11 4 2 14 14 C 1.46497 * 120.00155 * 185.36328 * 13 11 4 15 15 C 1.53004 * 109.47163 * 179.97438 * 14 13 11 16 16 N 1.46497 * 109.47163 * 179.97438 * 15 14 13 17 17 C 1.36934 * 119.99988 * 270.00445 * 16 15 14 18 18 H 1.08007 * 119.99957 * 139.10771 * 17 16 15 19 19 C 1.38818 * 120.00191 * 319.10270 * 17 16 15 20 20 N 1.31618 * 119.99936 * 159.89968 * 19 17 16 21 21 Si 1.86794 * 119.99858 * 339.89864 * 19 17 16 22 22 H 1.48502 * 109.47202 * 95.00648 * 21 19 17 23 23 H 1.48502 * 109.47070 * 215.01095 * 21 19 17 24 24 H 1.48501 * 109.47103 * 335.01099 * 21 19 17 25 25 C 1.46503 * 119.99890 * 90.00354 * 16 15 14 26 26 C 1.53001 * 117.49949 * 183.80585 * 25 16 15 27 27 C 1.52998 * 117.49699 * 115.18243 * 25 16 15 28 28 H 1.09009 * 109.47206 * 303.81020 * 1 2 3 29 29 H 1.09002 * 109.47802 * 63.80659 * 1 2 3 30 30 H 1.09000 * 109.47195 * 183.81181 * 1 2 3 31 31 H 1.09006 * 109.46697 * 240.00519 * 2 1 3 32 32 H 1.09001 * 109.47577 * 303.50388 * 3 2 1 33 33 H 1.08999 * 109.46629 * 63.50794 * 3 2 1 34 34 H 1.09006 * 109.46844 * 183.50182 * 3 2 1 35 35 H 0.97000 * 119.99722 * 305.32381 * 6 4 2 36 36 H 1.08998 * 109.47208 * 59.99623 * 8 7 6 37 37 H 1.09001 * 109.47233 * 179.97438 * 8 7 6 38 38 H 1.09005 * 109.46990 * 299.99770 * 8 7 6 39 39 H 0.97008 * 119.99830 * 5.36272 * 13 11 4 40 40 H 1.09002 * 109.46973 * 60.00191 * 14 13 11 41 41 H 1.08991 * 109.47382 * 299.99845 * 14 13 11 42 42 H 1.09002 * 109.46710 * 60.00410 * 15 14 13 43 43 H 1.08999 * 109.47019 * 300.00663 * 15 14 13 44 44 H 0.96997 * 120.00074 * 180.02562 * 20 19 17 45 45 H 1.09000 * 115.54684 * 329.51563 * 25 16 15 46 46 H 1.08998 * 117.49416 * 359.97438 * 26 25 16 47 47 H 1.08996 * 117.49914 * 145.02235 * 26 25 16 48 48 H 1.08998 * 117.49949 * 214.97842 * 27 25 16 49 49 H 1.08996 * 117.50198 * 359.97438 * 27 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 1 1.6379 -1.7342 1.2735 6 7 1.6053 0.0055 2.4445 7 16 0.7597 -0.7821 3.6306 8 6 1.9135 -2.0361 4.2525 9 8 0.5279 0.2148 4.6164 10 8 -0.3207 -1.3965 2.9418 11 6 3.5456 -0.7793 1.2162 12 8 4.1975 0.0454 1.8211 13 7 4.1676 -1.7474 0.5146 14 6 5.6256 -1.8756 0.5769 15 6 6.0729 -3.0444 -0.3034 16 7 7.5310 -3.1722 -0.2416 17 6 8.3161 -2.4960 -1.1368 18 1 9.2299 -2.0250 -0.8056 19 6 7.9377 -2.4160 -2.4700 20 7 8.4380 -1.4737 -3.2407 21 14 6.7184 -3.6458 -3.1701 22 1 5.3498 -3.0722 -3.1151 23 1 7.0730 -3.9463 -4.5806 24 1 6.7632 -4.8968 -2.3712 25 6 8.1491 -4.0234 0.7781 26 6 9.6773 -4.0458 0.8480 27 6 8.9188 -5.2554 0.2980 28 1 -0.3634 0.5719 0.8539 29 1 -0.3635 0.4536 -0.9221 30 1 -0.3633 -1.0254 0.0683 31 1 1.8933 -0.5138 -0.8901 32 1 1.6263 1.9742 -0.8569 33 1 1.7288 1.9378 0.9198 34 1 3.1282 1.4431 -0.0628 35 1 1.8128 0.9481 2.5412 36 1 2.8050 -1.5469 4.6448 37 1 1.4344 -2.6087 5.0467 38 1 2.1945 -2.7061 3.4398 39 1 3.6497 -2.3594 -0.0316 40 1 5.9304 -2.0598 1.6071 41 1 6.0869 -0.9547 0.2206 42 1 5.7681 -2.8606 -1.3337 43 1 5.6115 -3.9652 0.0533 44 1 8.1733 -1.4176 -4.1722 45 1 7.6007 -4.1066 1.7164 46 1 10.2228 -3.4276 0.1350 47 1 10.1347 -4.1437 1.8325 48 1 8.8772 -6.1490 0.9207 49 1 8.9650 -5.4329 -0.7764 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714673800.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:08:35 Heat of formation + Delta-G solvation = -58.921224 kcal Electronic energy + Delta-G solvation = -30057.963012 eV Core-core repulsion = 25956.172073 eV Total energy + Delta-G solvation = -4101.790939 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.16815 -37.60429 -37.37255 -36.78975 -36.20806 -35.04225 -33.33504 -32.84824 -31.49880 -29.77859 -28.68575 -27.30564 -26.57927 -24.28777 -22.51502 -21.50154 -21.16271 -20.25598 -19.77460 -19.67949 -18.22646 -17.54212 -16.73965 -16.48040 -16.10367 -15.85618 -15.73736 -15.39634 -15.27391 -14.73211 -14.60876 -13.96731 -13.86803 -13.67438 -13.56710 -13.45888 -12.97790 -12.67817 -12.57139 -12.43263 -12.36065 -12.31930 -12.26073 -12.14452 -11.97735 -11.75598 -11.46357 -11.38970 -11.16008 -11.04164 -10.96052 -10.83629 -10.52792 -10.47191 -10.13521 -10.01092 -9.62809 -9.54801 -9.34798 -8.85216 -8.64729 -6.87022 -6.14658 -3.63485 -0.03419 2.27173 2.62036 3.12208 3.21349 3.33676 3.38193 3.52564 3.89572 4.32604 4.35296 4.44369 4.48175 4.52607 4.64155 4.72932 4.82317 4.88794 5.06515 5.13905 5.31428 5.37252 5.40901 5.55012 5.61523 5.66056 5.69422 5.74337 5.79666 5.89507 5.92996 5.96219 6.04984 6.16220 6.17988 6.34566 6.35129 6.46533 6.54549 6.69687 6.71249 6.84446 7.04012 7.57538 7.90597 8.25158 8.28047 8.81643 9.52715 9.91728 10.99495 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.013896 B = 0.003074 C = 0.002752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2014.547339 B = 9107.100328 C =10170.809434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.095 4.095 3 C -0.151 4.151 4 C 0.139 3.861 5 H 0.109 0.891 6 N -1.094 6.094 7 S 2.613 3.387 8 C -0.675 4.675 9 O -0.957 6.957 10 O -0.952 6.952 11 C 0.494 3.506 12 O -0.526 6.526 13 N -0.724 5.724 14 C 0.099 3.901 15 C 0.130 3.870 16 N -0.568 5.568 17 C -0.276 4.276 18 H 0.084 0.916 19 C 0.042 3.958 20 N -0.892 5.892 21 Si 0.877 3.123 22 H -0.285 1.285 23 H -0.299 1.299 24 H -0.265 1.265 25 C 0.118 3.882 26 C -0.186 4.186 27 C -0.221 4.221 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.063 0.937 31 H 0.088 0.912 32 H 0.060 0.940 33 H 0.058 0.942 34 H 0.063 0.937 35 H 0.425 0.575 36 H 0.133 0.867 37 H 0.129 0.871 38 H 0.126 0.874 39 H 0.397 0.603 40 H 0.060 0.940 41 H 0.078 0.922 42 H 0.061 0.939 43 H 0.047 0.953 44 H 0.265 0.735 45 H 0.091 0.909 46 H 0.104 0.896 47 H 0.077 0.923 48 H 0.074 0.926 49 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.534 -2.028 10.027 18.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.115 4.115 3 C -0.208 4.208 4 C 0.027 3.973 5 H 0.127 0.873 6 N -0.853 5.853 7 S 2.704 3.296 8 C -0.825 4.825 9 O -0.948 6.948 10 O -0.942 6.942 11 C 0.277 3.723 12 O -0.402 6.402 13 N -0.376 5.376 14 C -0.026 4.026 15 C 0.004 3.996 16 N -0.286 5.286 17 C -0.404 4.404 18 H 0.101 0.899 19 C -0.160 4.160 20 N -0.532 5.532 21 Si 0.706 3.294 22 H -0.213 1.213 23 H -0.227 1.227 24 H -0.190 1.190 25 C 0.009 3.991 26 C -0.224 4.224 27 C -0.262 4.262 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.106 0.894 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.263 0.737 36 H 0.151 0.849 37 H 0.147 0.853 38 H 0.145 0.855 39 H 0.230 0.770 40 H 0.079 0.921 41 H 0.097 0.903 42 H 0.078 0.922 43 H 0.065 0.935 44 H 0.075 0.925 45 H 0.109 0.891 46 H 0.122 0.878 47 H 0.096 0.904 48 H 0.092 0.908 49 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -15.936 -1.343 10.560 19.164 hybrid contribution 0.105 -0.985 -0.830 1.292 sum -15.830 -2.328 9.730 18.727 Atomic orbital electron populations 1.21821 0.93441 1.02820 1.02061 1.21348 0.97177 0.97493 0.95514 1.21854 1.02012 0.94932 1.02025 1.20819 0.91766 0.97209 0.87535 0.87326 1.55406 1.75338 1.22661 1.31920 1.04811 0.75311 0.75684 0.73779 1.30557 1.19026 1.19437 1.13435 1.93626 1.84549 1.56332 1.60268 1.93631 1.49491 1.78738 1.72376 1.20947 0.90052 0.81489 0.79832 1.90711 1.66980 1.38299 1.44162 1.46172 1.09558 1.33496 1.48388 1.22297 0.77016 1.02398 1.00867 1.21339 0.85548 0.94493 0.98239 1.43490 1.00042 1.50350 1.34763 1.18730 1.07322 1.27242 0.87138 0.89885 1.25563 0.97668 0.96680 0.96041 1.69837 1.45284 1.30821 1.07255 0.86933 0.80507 0.83845 0.78082 1.21285 1.22698 1.18970 1.21183 0.91424 0.93680 0.92768 1.23067 0.95794 1.02223 1.01346 1.23362 1.09244 0.92442 1.01159 0.92238 0.92294 0.91787 0.89405 0.92088 0.92298 0.91772 0.73721 0.84853 0.85271 0.85515 0.76958 0.92131 0.90343 0.92161 0.93465 0.92456 0.89080 0.87784 0.90414 0.90778 0.89251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 9.01 37.16 0.33 -0.90 16 2 C -0.09 -0.87 2.76 -90.62 -0.25 -1.12 16 3 C -0.15 -1.54 8.70 37.16 0.32 -1.21 16 4 C 0.14 1.31 2.29 -69.08 -0.16 1.15 16 5 H 0.11 0.74 7.64 -51.92 -0.40 0.34 16 6 N -1.09 -10.04 4.16 -5.88 -0.02 -10.06 16 7 S 2.61 23.11 5.97 -107.50 -0.64 22.47 16 8 C -0.67 -4.43 10.85 101.05 1.10 -3.33 16 9 O -0.96 -11.73 18.08 -57.54 -1.04 -12.78 16 10 O -0.95 -10.37 17.65 -57.54 -1.02 -11.39 16 11 C 0.49 6.33 6.11 -10.99 -0.07 6.26 16 12 O -0.53 -8.63 16.21 5.55 0.09 -8.54 16 13 N -0.72 -9.41 5.55 -60.30 -0.33 -9.74 16 14 C 0.10 1.68 6.00 -4.04 -0.02 1.66 16 15 C 0.13 2.41 4.64 -4.04 -0.02 2.40 16 16 N -0.57 -12.23 2.36 -165.66 -0.39 -12.62 16 17 C -0.28 -7.12 8.89 -15.06 -0.13 -7.26 16 18 H 0.08 2.36 6.95 -52.48 -0.36 2.00 16 19 C 0.04 1.14 5.32 -17.43 -0.09 1.05 16 20 N -0.89 -25.78 13.97 55.49 0.78 -25.00 16 21 Si 0.88 20.41 25.06 -169.99 -4.26 16.15 16 22 H -0.28 -6.24 6.70 56.52 0.38 -5.86 16 23 H -0.30 -7.23 7.11 56.52 0.40 -6.83 16 24 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 25 C 0.12 2.20 6.57 -67.93 -0.45 1.75 16 26 C -0.19 -3.37 9.80 -26.73 -0.26 -3.63 16 27 C -0.22 -3.96 10.35 -26.73 -0.28 -4.24 16 28 H 0.06 0.54 7.80 -51.92 -0.40 0.13 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.56 6.52 -51.93 -0.34 0.22 16 34 H 0.06 0.81 7.17 -51.93 -0.37 0.43 16 35 H 0.43 3.90 7.20 -34.47 -0.25 3.65 16 36 H 0.13 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.13 0.62 8.14 -51.92 -0.42 0.20 16 38 H 0.13 0.70 8.14 -51.92 -0.42 0.28 16 39 H 0.40 4.04 8.48 -40.82 -0.35 3.70 16 40 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 41 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 42 H 0.06 1.23 3.54 -51.93 -0.18 1.04 16 43 H 0.05 0.75 8.07 -51.93 -0.42 0.33 16 44 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 45 H 0.09 1.48 8.14 -51.93 -0.42 1.05 16 46 H 0.10 2.15 6.49 -51.93 -0.34 1.81 16 47 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 48 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 49 H 0.09 1.81 8.14 -51.93 -0.42 1.39 16 LS Contribution 405.21 15.07 6.11 6.11 Total: -1.00 -34.48 405.21 -8.78 -43.26 By element: Atomic # 1 Polarization: 17.63 SS G_CDS: -8.07 Total: 9.57 kcal Atomic # 6 Polarization: -7.45 SS G_CDS: 0.02 Total: -7.43 kcal Atomic # 7 Polarization: -57.45 SS G_CDS: 0.03 Total: -57.42 kcal Atomic # 8 Polarization: -30.74 SS G_CDS: -1.97 Total: -32.70 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -4.26 Total: 16.15 kcal Atomic # 16 Polarization: 23.11 SS G_CDS: -0.64 Total: 22.47 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -34.48 -8.78 -43.26 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714673800.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.660 kcal (2) G-P(sol) polarization free energy of solvation -34.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds