Wall clock time and date at job start Wed Apr 1 2020 05:08:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46952 * 2 1 4 4 C 1.52994 * 109.47398 * 120.00339 * 2 1 3 5 5 H 1.09007 * 109.46901 * 57.31404 * 4 2 1 6 6 N 1.46500 * 109.47292 * 297.31634 * 4 2 1 7 7 S 1.65599 * 120.00016 * 125.32540 * 6 4 2 8 8 C 1.81400 * 104.45016 * 63.30171 * 7 6 4 9 9 O 1.42102 * 104.27159 * 179.36959 * 7 6 4 10 10 O 1.42095 * 104.27966 * 307.22890 * 7 6 4 11 11 C 1.50702 * 109.47109 * 177.30860 * 4 2 1 12 12 O 1.21284 * 119.99481 * 96.97942 * 11 4 2 13 13 N 1.34772 * 120.00570 * 276.97711 * 11 4 2 14 14 C 1.46497 * 120.00155 * 185.36328 * 13 11 4 15 15 C 1.53004 * 109.47163 * 179.97438 * 14 13 11 16 16 N 1.46497 * 109.47163 * 179.97438 * 15 14 13 17 17 C 1.36934 * 119.99988 * 270.00445 * 16 15 14 18 18 H 1.08007 * 119.99957 * 139.10771 * 17 16 15 19 19 C 1.38818 * 120.00191 * 319.10270 * 17 16 15 20 20 N 1.31618 * 119.99936 * 159.89968 * 19 17 16 21 21 Si 1.86794 * 119.99858 * 339.89864 * 19 17 16 22 22 H 1.48502 * 109.47202 * 95.00648 * 21 19 17 23 23 H 1.48502 * 109.47070 * 215.01095 * 21 19 17 24 24 H 1.48501 * 109.47103 * 335.01099 * 21 19 17 25 25 C 1.46503 * 119.99890 * 90.00354 * 16 15 14 26 26 C 1.53001 * 117.49949 * 183.80585 * 25 16 15 27 27 C 1.52998 * 117.49699 * 115.18243 * 25 16 15 28 28 H 1.09009 * 109.47206 * 303.81020 * 1 2 3 29 29 H 1.09002 * 109.47802 * 63.80659 * 1 2 3 30 30 H 1.09000 * 109.47195 * 183.81181 * 1 2 3 31 31 H 1.09006 * 109.46697 * 240.00519 * 2 1 3 32 32 H 1.09001 * 109.47577 * 303.50388 * 3 2 1 33 33 H 1.08999 * 109.46629 * 63.50794 * 3 2 1 34 34 H 1.09006 * 109.46844 * 183.50182 * 3 2 1 35 35 H 0.97000 * 119.99722 * 305.32381 * 6 4 2 36 36 H 1.08998 * 109.47208 * 59.99623 * 8 7 6 37 37 H 1.09001 * 109.47233 * 179.97438 * 8 7 6 38 38 H 1.09005 * 109.46990 * 299.99770 * 8 7 6 39 39 H 0.97008 * 119.99830 * 5.36272 * 13 11 4 40 40 H 1.09002 * 109.46973 * 60.00191 * 14 13 11 41 41 H 1.08991 * 109.47382 * 299.99845 * 14 13 11 42 42 H 1.09002 * 109.46710 * 60.00410 * 15 14 13 43 43 H 1.08999 * 109.47019 * 300.00663 * 15 14 13 44 44 H 0.96997 * 120.00074 * 180.02562 * 20 19 17 45 45 H 1.09000 * 115.54684 * 329.51563 * 25 16 15 46 46 H 1.08998 * 117.49416 * 359.97438 * 26 25 16 47 47 H 1.08996 * 117.49914 * 145.02235 * 26 25 16 48 48 H 1.08998 * 117.49949 * 214.97842 * 27 25 16 49 49 H 1.08996 * 117.50198 * 359.97438 * 27 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 1 1.6379 -1.7342 1.2735 6 7 1.6053 0.0055 2.4445 7 16 0.7597 -0.7821 3.6306 8 6 1.9135 -2.0361 4.2525 9 8 0.5279 0.2148 4.6164 10 8 -0.3207 -1.3965 2.9418 11 6 3.5456 -0.7793 1.2162 12 8 4.1975 0.0454 1.8211 13 7 4.1676 -1.7474 0.5146 14 6 5.6256 -1.8756 0.5769 15 6 6.0729 -3.0444 -0.3034 16 7 7.5310 -3.1722 -0.2416 17 6 8.3161 -2.4960 -1.1368 18 1 9.2299 -2.0250 -0.8056 19 6 7.9377 -2.4160 -2.4700 20 7 8.4380 -1.4737 -3.2407 21 14 6.7184 -3.6458 -3.1701 22 1 5.3498 -3.0722 -3.1151 23 1 7.0730 -3.9463 -4.5806 24 1 6.7632 -4.8968 -2.3712 25 6 8.1491 -4.0234 0.7781 26 6 9.6773 -4.0458 0.8480 27 6 8.9188 -5.2554 0.2980 28 1 -0.3634 0.5719 0.8539 29 1 -0.3635 0.4536 -0.9221 30 1 -0.3633 -1.0254 0.0683 31 1 1.8933 -0.5138 -0.8901 32 1 1.6263 1.9742 -0.8569 33 1 1.7288 1.9378 0.9198 34 1 3.1282 1.4431 -0.0628 35 1 1.8128 0.9481 2.5412 36 1 2.8050 -1.5469 4.6448 37 1 1.4344 -2.6087 5.0467 38 1 2.1945 -2.7061 3.4398 39 1 3.6497 -2.3594 -0.0316 40 1 5.9304 -2.0598 1.6071 41 1 6.0869 -0.9547 0.2206 42 1 5.7681 -2.8606 -1.3337 43 1 5.6115 -3.9652 0.0533 44 1 8.1733 -1.4176 -4.1722 45 1 7.6007 -4.1066 1.7164 46 1 10.2228 -3.4276 0.1350 47 1 10.1347 -4.1437 1.8325 48 1 8.8772 -6.1490 0.9207 49 1 8.9650 -5.4329 -0.7764 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714673800.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:08:34 Heat of formation + Delta-G solvation = -86.777965 kcal Electronic energy + Delta-G solvation = -30059.170971 eV Core-core repulsion = 25956.172073 eV Total energy + Delta-G solvation = -4102.998898 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.18278 -39.07414 -38.23489 -37.70471 -36.99829 -36.33315 -34.95663 -33.60316 -33.28680 -30.33167 -30.01892 -28.05938 -27.69686 -26.04062 -23.91119 -22.93337 -22.14242 -21.44725 -21.07660 -20.43984 -19.09425 -18.61516 -18.01716 -17.55004 -17.37382 -17.24264 -16.89267 -16.44161 -16.43230 -15.73481 -15.57894 -15.41973 -15.00639 -14.86039 -14.44143 -14.16046 -14.06384 -14.06141 -13.95867 -13.51921 -13.38261 -13.27335 -13.23502 -13.14020 -13.04294 -12.89780 -12.67568 -12.49426 -12.22667 -12.16015 -12.07565 -11.92198 -11.82176 -11.76963 -11.69966 -11.32155 -11.30963 -10.97578 -10.63889 -10.31476 -10.03403 -8.63592 -8.19919 -5.66012 -0.70656 1.28209 1.44131 1.47768 1.55000 1.66778 2.18289 2.41068 2.83577 3.04992 3.21726 3.24553 3.35143 3.60121 3.72753 3.76629 3.97237 4.06479 4.16014 4.19622 4.22602 4.29750 4.30889 4.40393 4.50461 4.59625 4.62160 4.67242 4.83108 4.92256 4.94781 4.96378 4.97586 5.05167 5.06846 5.16625 5.20790 5.31865 5.37260 5.47218 5.49113 5.55761 5.94139 5.94656 6.22127 6.57557 6.98358 7.24963 7.59931 7.99600 8.98714 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.013896 B = 0.003074 C = 0.002752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2014.547339 B = 9107.100328 C =10170.809434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.094 4.094 3 C -0.151 4.151 4 C 0.143 3.857 5 H 0.145 0.855 6 N -1.096 6.096 7 S 2.625 3.375 8 C -0.664 4.664 9 O -0.996 6.996 10 O -0.973 6.973 11 C 0.497 3.503 12 O -0.565 6.565 13 N -0.715 5.715 14 C 0.118 3.882 15 C 0.129 3.871 16 N -0.582 5.582 17 C -0.259 4.259 18 H 0.038 0.962 19 C -0.018 4.018 20 N -0.949 5.949 21 Si 0.943 3.057 22 H -0.259 1.259 23 H -0.315 1.315 24 H -0.251 1.251 25 C 0.106 3.894 26 C -0.193 4.193 27 C -0.207 4.207 28 H 0.052 0.948 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.097 0.903 32 H 0.068 0.932 33 H 0.061 0.939 34 H 0.034 0.966 35 H 0.424 0.576 36 H 0.134 0.866 37 H 0.151 0.849 38 H 0.145 0.855 39 H 0.415 0.585 40 H 0.065 0.935 41 H 0.030 0.970 42 H 0.044 0.956 43 H 0.089 0.911 44 H 0.263 0.737 45 H 0.129 0.871 46 H 0.064 0.936 47 H 0.110 0.890 48 H 0.113 0.887 49 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.050 -5.073 11.470 21.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.115 4.115 3 C -0.209 4.209 4 C 0.031 3.969 5 H 0.162 0.838 6 N -0.855 5.855 7 S 2.720 3.280 8 C -0.817 4.817 9 O -0.987 6.987 10 O -0.963 6.963 11 C 0.281 3.719 12 O -0.443 6.443 13 N -0.369 5.369 14 C -0.008 4.008 15 C 0.003 3.997 16 N -0.302 5.302 17 C -0.389 4.389 18 H 0.055 0.945 19 C -0.214 4.214 20 N -0.592 5.592 21 Si 0.770 3.230 22 H -0.185 1.185 23 H -0.244 1.244 24 H -0.174 1.174 25 C -0.001 4.001 26 C -0.231 4.231 27 C -0.248 4.248 28 H 0.071 0.929 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.115 0.885 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.053 0.947 35 H 0.260 0.740 36 H 0.152 0.848 37 H 0.170 0.830 38 H 0.164 0.836 39 H 0.251 0.749 40 H 0.084 0.916 41 H 0.048 0.952 42 H 0.062 0.938 43 H 0.107 0.893 44 H 0.072 0.928 45 H 0.147 0.853 46 H 0.083 0.917 47 H 0.128 0.872 48 H 0.131 0.869 49 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -18.519 -4.402 12.020 22.513 hybrid contribution 1.000 0.002 -1.168 1.538 sum -17.518 -4.400 10.852 21.072 Atomic orbital electron populations 1.21792 0.92527 1.03220 1.02247 1.21382 0.97764 0.96592 0.95723 1.21846 1.00049 0.96308 1.02652 1.20915 0.88967 0.99201 0.87771 0.83758 1.55398 1.75041 1.22796 1.32225 1.04306 0.75311 0.75443 0.72912 1.30449 1.17941 1.18553 1.14760 1.93577 1.85464 1.58378 1.61251 1.93600 1.51111 1.78836 1.72712 1.21561 0.91413 0.80334 0.78573 1.90703 1.68185 1.39661 1.45753 1.45972 1.07934 1.34149 1.48814 1.21769 0.79188 0.99454 1.00405 1.21424 0.83770 0.96721 0.97749 1.43591 1.01147 1.50879 1.34598 1.18499 1.06205 1.26131 0.88068 0.94476 1.26222 1.00530 0.98293 0.96386 1.69994 1.48471 1.33257 1.07477 0.85857 0.79306 0.81595 0.76202 1.18526 1.24419 1.17423 1.21545 0.91722 0.93605 0.93241 1.23034 0.95714 1.02225 1.02101 1.23336 1.07891 0.93430 1.00101 0.92934 0.91440 0.91110 0.88501 0.91253 0.91980 0.94680 0.73968 0.84782 0.83028 0.83625 0.74851 0.91631 0.95192 0.93842 0.89299 0.92820 0.85347 0.91710 0.87176 0.86913 0.92115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.07 9.01 71.98 0.65 -1.42 16 2 C -0.09 -1.54 2.76 -10.80 -0.03 -1.57 16 3 C -0.15 -3.00 8.70 71.98 0.63 -2.38 16 4 C 0.14 2.35 2.29 44.24 0.10 2.45 16 5 H 0.14 1.34 7.64 -2.38 -0.02 1.32 16 6 N -1.10 -18.40 4.16 -172.52 -0.72 -19.11 16 7 S 2.63 41.36 5.97 -56.49 -0.34 41.02 16 8 C -0.66 -6.33 10.85 113.37 1.23 -5.10 16 9 O -1.00 -23.69 18.08 -127.65 -2.31 -26.00 16 10 O -0.97 -18.86 17.65 -127.65 -2.25 -21.11 16 11 C 0.50 11.85 6.11 87.66 0.54 12.39 16 12 O -0.57 -18.37 16.21 -3.04 -0.05 -18.42 16 13 N -0.72 -16.77 5.55 -463.07 -2.57 -19.34 16 14 C 0.12 3.84 6.00 86.38 0.52 4.36 16 15 C 0.13 4.44 4.64 86.38 0.40 4.84 16 16 N -0.58 -24.51 2.36 -678.02 -1.60 -26.11 16 17 C -0.26 -13.84 8.89 84.04 0.75 -13.09 16 18 H 0.04 2.28 6.95 -2.91 -0.02 2.26 16 19 C -0.02 -0.96 5.32 84.86 0.45 -0.51 16 20 N -0.95 -57.53 13.97 21.65 0.30 -57.23 16 21 Si 0.94 42.13 25.06 68.60 1.72 43.85 16 22 H -0.26 -10.37 6.70 99.48 0.67 -9.71 16 23 H -0.32 -14.82 7.11 99.48 0.71 -14.11 16 24 H -0.25 -10.48 7.11 99.48 0.71 -9.77 16 25 C 0.11 3.68 6.57 44.99 0.30 3.98 16 26 C -0.19 -6.77 9.80 30.60 0.30 -6.47 16 27 C -0.21 -6.85 10.35 30.59 0.32 -6.54 16 28 H 0.05 0.85 7.80 -2.38 -0.02 0.83 16 29 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.10 1.43 8.14 -2.38 -0.02 1.41 16 32 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.06 1.16 6.52 -2.39 -0.02 1.15 16 34 H 0.03 0.89 7.17 -2.38 -0.02 0.88 16 35 H 0.42 7.56 7.20 -96.74 -0.70 6.86 16 36 H 0.13 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.15 0.83 8.14 -2.39 -0.02 0.82 16 38 H 0.15 0.90 8.14 -2.39 -0.02 0.89 16 39 H 0.41 6.81 8.48 -92.70 -0.79 6.03 16 40 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 41 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 42 H 0.04 1.66 3.54 -2.39 -0.01 1.65 16 43 H 0.09 2.37 8.07 -2.39 -0.02 2.35 16 44 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 45 H 0.13 3.54 8.14 -2.39 -0.02 3.53 16 46 H 0.06 2.80 6.49 -2.39 -0.02 2.78 16 47 H 0.11 3.12 8.14 -2.39 -0.02 3.10 16 48 H 0.11 2.89 8.14 -2.39 -0.02 2.87 16 49 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 Total: -1.00 -79.76 405.21 -2.23 -81.99 By element: Atomic # 1 Polarization: 30.08 SS G_CDS: -0.56 Total: 29.52 kcal Atomic # 6 Polarization: -15.20 SS G_CDS: 6.14 Total: -9.06 kcal Atomic # 7 Polarization: -117.21 SS G_CDS: -4.58 Total: -121.80 kcal Atomic # 8 Polarization: -60.92 SS G_CDS: -4.61 Total: -65.53 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 1.72 Total: 43.85 kcal Atomic # 16 Polarization: 41.36 SS G_CDS: -0.34 Total: 41.02 kcal Total: -79.76 -2.23 -81.99 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714673800.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.787 kcal (2) G-P(sol) polarization free energy of solvation -79.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds