Wall clock time and date at job start Wed Apr 1 2020 04:41:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46495 * 120.00183 * 2 1 4 4 C 1.50698 * 109.47405 * 275.00136 * 3 2 1 5 5 O 1.21284 * 119.99753 * 359.97438 * 4 3 2 6 6 N 1.34781 * 120.00476 * 179.97438 * 4 3 2 7 7 C 1.46504 * 119.99898 * 179.97438 * 6 4 3 8 8 C 1.52998 * 109.46722 * 179.97438 * 7 6 4 9 9 C 1.53001 * 109.49878 * 59.93634 * 8 7 6 10 10 C 1.53035 * 109.49656 * 180.02562 * 8 7 6 11 11 C 1.53048 * 109.53781 * 181.31832 * 10 8 7 12 12 C 1.53184 * 109.31090 * 298.63583 * 11 10 8 13 13 N 1.46926 * 108.78128 * 54.63354 * 12 11 10 14 14 C 1.36933 * 120.63144 * 126.39071 * 13 12 11 15 15 H 1.08006 * 119.99645 * 332.75745 * 14 13 12 16 16 C 1.38815 * 119.99975 * 152.76032 * 14 13 12 17 17 N 1.31617 * 119.99789 * 159.75067 * 16 14 13 18 18 Si 1.86798 * 119.99953 * 339.74837 * 16 14 13 19 19 H 1.48500 * 109.46787 * 94.91318 * 18 16 14 20 20 H 1.48496 * 109.47018 * 214.91280 * 18 16 14 21 21 H 1.48501 * 109.46975 * 334.91962 * 18 16 14 22 22 C 1.46922 * 118.73669 * 306.39343 * 13 12 11 23 23 S 1.65599 * 119.99695 * 180.02562 * 2 1 3 24 24 C 1.81402 * 104.44709 * 269.99740 * 23 2 1 25 25 O 1.42095 * 104.28064 * 26.06773 * 23 2 1 26 26 O 1.42099 * 104.27736 * 153.93220 * 23 2 1 27 27 H 1.09000 * 109.47182 * 89.99867 * 1 2 3 28 28 H 1.08993 * 109.47249 * 210.00072 * 1 2 3 29 29 H 1.09001 * 109.47083 * 330.00300 * 1 2 3 30 30 H 1.09006 * 109.47109 * 34.99784 * 3 2 1 31 31 H 1.08998 * 109.47324 * 154.99883 * 3 2 1 32 32 H 0.96998 * 119.99752 * 359.97438 * 6 4 3 33 33 H 1.08997 * 109.47026 * 299.99889 * 7 6 4 34 34 H 1.09001 * 109.47014 * 60.00293 * 7 6 4 35 35 H 1.09003 * 109.47383 * 59.99793 * 9 8 7 36 36 H 1.08996 * 109.47477 * 180.02562 * 9 8 7 37 37 H 1.09007 * 109.47173 * 300.00215 * 9 8 7 38 38 H 1.08999 * 109.45974 * 301.33411 * 10 8 7 39 39 H 1.08994 * 109.46531 * 61.29675 * 10 8 7 40 40 H 1.08999 * 109.49684 * 58.58713 * 11 10 8 41 41 H 1.09003 * 109.49681 * 178.67930 * 11 10 8 42 42 H 1.09000 * 109.58613 * 174.42419 * 12 11 10 43 43 H 1.09006 * 109.58621 * 294.84500 * 12 11 10 44 44 H 0.97002 * 119.99511 * 180.02562 * 17 16 14 45 45 H 1.08999 * 109.59228 * 293.81909 * 22 13 12 46 46 H 1.08998 * 109.58893 * 173.38906 * 22 13 12 47 47 H 1.09001 * 109.47127 * 60.00368 * 24 23 2 48 48 H 1.09007 * 109.46815 * 180.02562 * 24 23 2 49 49 H 1.08996 * 109.47185 * 300.00055 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3415 1.7657 -1.4154 5 8 1.8782 1.1231 -2.3337 6 7 2.9850 2.9242 -1.6607 7 6 3.1254 3.4070 -3.0368 8 6 3.8892 4.7327 -3.0366 9 6 5.2757 4.5231 -2.4247 10 6 4.0356 5.2379 -4.4737 11 6 4.8281 6.5473 -4.4777 12 6 4.0668 7.6026 -3.6693 13 7 3.7946 7.0661 -2.3289 14 6 4.1651 7.7630 -1.2100 15 1 5.0031 8.4432 -1.2503 16 6 3.4637 7.5953 -0.0238 17 7 4.0204 7.9255 1.1222 18 14 1.7298 6.9010 -0.0542 19 1 1.7795 5.4352 0.1789 20 1 0.9202 7.5446 1.0113 21 1 1.1117 7.1710 -1.3772 22 6 3.1173 5.7676 -2.2119 23 16 2.2929 -1.4342 -0.0006 24 6 2.5193 -1.8269 1.7558 25 8 1.3969 -2.3559 -0.6062 26 8 3.5395 -1.1189 -0.6056 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 -0.8899 0.5138 29 1 -0.3633 0.8900 0.5138 30 1 1.6501 2.0043 0.5894 31 1 3.1858 1.1176 0.4343 32 1 3.3552 3.4383 -0.9262 33 1 3.6734 2.6716 -3.6257 34 1 2.1372 3.5575 -3.4716 35 1 5.8250 3.7877 -3.0125 36 1 5.8194 5.4679 -2.4243 37 1 5.1706 4.1645 -1.4006 38 1 4.5632 4.4925 -5.0687 39 1 3.0477 5.4102 -4.9006 40 1 5.8072 6.3813 -4.0284 41 1 4.9522 6.8943 -5.5035 42 1 4.6719 8.5054 -3.5856 43 1 3.1258 7.8358 -4.1676 44 1 3.5304 7.8079 1.9510 45 1 2.0989 5.8510 -2.5913 46 1 3.0959 5.4594 -1.1666 47 1 1.5451 -1.9197 2.2359 48 1 3.0626 -2.7671 1.8508 49 1 3.0866 -1.0297 2.2362 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716897029.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:43 Heat of formation + Delta-G solvation = -73.665350 kcal Electronic energy + Delta-G solvation = -30647.447053 eV Core-core repulsion = 26545.016761 eV Total energy + Delta-G solvation = -4102.430293 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 2.18 seconds Orbital eigenvalues (eV) -39.92412 -38.66661 -37.33836 -36.22702 -35.95841 -34.84991 -33.27397 -31.62968 -30.66593 -29.83778 -29.06554 -26.72885 -26.11765 -25.37550 -24.74102 -22.56717 -20.72492 -20.38258 -19.15030 -18.43157 -17.92953 -17.46497 -16.77893 -16.67185 -16.30324 -15.71448 -15.39064 -15.06065 -14.64707 -14.34924 -14.16468 -14.03540 -13.73588 -13.59446 -13.54120 -13.51340 -13.25515 -13.11052 -12.93693 -12.57384 -12.37557 -12.26104 -12.18994 -12.03563 -11.86617 -11.74303 -11.60356 -11.27658 -11.21668 -11.05885 -10.77217 -10.56969 -10.40201 -10.24030 -10.05242 -9.87377 -9.66256 -9.48645 -9.12209 -8.84391 -8.68209 -7.01195 -6.01608 -3.36538 -0.05949 2.29565 2.74831 3.16659 3.33640 3.40351 3.44440 3.69354 3.84248 4.23785 4.43750 4.48057 4.57571 4.76883 4.87628 4.94163 5.09129 5.11486 5.22210 5.22497 5.25398 5.30988 5.38563 5.57964 5.61629 5.73175 5.76204 5.80814 5.98739 5.99406 6.03596 6.11164 6.24726 6.27411 6.33480 6.38201 6.51909 6.59910 6.61424 6.64006 6.73666 6.81763 7.02197 7.65474 7.89973 8.26625 8.35416 8.88178 9.65502 10.04615 11.14347 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.014540 B = 0.003313 C = 0.002973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1925.196391 B = 8448.316233 C = 9416.645389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.985 5.985 3 C 0.103 3.897 4 C 0.496 3.504 5 O -0.534 6.534 6 N -0.723 5.723 7 C 0.133 3.867 8 C -0.094 4.094 9 C -0.128 4.128 10 C -0.096 4.096 11 C -0.137 4.137 12 C 0.146 3.854 13 N -0.603 5.603 14 C -0.254 4.254 15 H 0.086 0.914 16 C 0.023 3.977 17 N -0.908 5.908 18 Si 0.880 3.120 19 H -0.291 1.291 20 H -0.304 1.304 21 H -0.271 1.271 22 C 0.141 3.859 23 S 2.611 3.389 24 C -0.676 4.676 25 O -0.950 6.950 26 O -0.946 6.946 27 H 0.065 0.935 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.112 0.888 31 H 0.112 0.888 32 H 0.404 0.596 33 H 0.066 0.934 34 H 0.063 0.937 35 H 0.042 0.958 36 H 0.076 0.924 37 H 0.047 0.953 38 H 0.054 0.946 39 H 0.057 0.943 40 H 0.067 0.933 41 H 0.054 0.946 42 H 0.062 0.938 43 H 0.021 0.979 44 H 0.262 0.738 45 H 0.025 0.975 46 H 0.069 0.931 47 H 0.127 0.873 48 H 0.127 0.873 49 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.327 -15.482 0.302 15.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.821 5.821 3 C -0.027 4.027 4 C 0.280 3.720 5 O -0.410 6.410 6 N -0.377 5.377 7 C 0.008 3.992 8 C -0.096 4.096 9 C -0.186 4.186 10 C -0.134 4.134 11 C -0.176 4.176 12 C 0.021 3.979 13 N -0.326 5.326 14 C -0.382 4.382 15 H 0.104 0.896 16 C -0.176 4.176 17 N -0.551 5.551 18 Si 0.711 3.289 19 H -0.219 1.219 20 H -0.233 1.233 21 H -0.196 1.196 22 C 0.015 3.985 23 S 2.702 3.298 24 C -0.826 4.826 25 O -0.940 6.940 26 O -0.936 6.936 27 H 0.084 0.916 28 H 0.090 0.910 29 H 0.091 0.909 30 H 0.130 0.870 31 H 0.130 0.870 32 H 0.240 0.760 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.061 0.939 36 H 0.095 0.905 37 H 0.066 0.934 38 H 0.073 0.927 39 H 0.075 0.925 40 H 0.085 0.915 41 H 0.073 0.927 42 H 0.081 0.919 43 H 0.039 0.961 44 H 0.072 0.928 45 H 0.043 0.957 46 H 0.087 0.913 47 H 0.146 0.854 48 H 0.146 0.854 49 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -3.422 -16.361 -0.919 16.740 hybrid contribution -0.980 0.088 1.257 1.596 sum -4.402 -16.273 0.338 16.861 Atomic orbital electron populations 1.21503 0.77648 1.02559 1.03225 1.57097 1.15518 1.20037 1.89467 1.21168 0.98916 0.87207 0.95382 1.21007 0.78216 0.80997 0.91810 1.90680 1.47981 1.56467 1.45901 1.46111 1.57724 1.23487 1.10349 1.21431 1.00269 0.95138 0.82324 1.21366 0.97014 0.93785 0.97452 1.21744 0.95367 1.02149 0.99306 1.21356 1.00160 0.97269 0.94612 1.22046 1.00077 0.96110 0.99331 1.20957 0.96646 0.94838 0.85492 1.44305 1.69449 1.16811 1.02027 1.18943 1.10463 1.22184 0.86627 0.89629 1.25263 0.97820 0.99119 0.95397 1.69837 1.36788 1.51381 0.97127 0.87011 0.87556 0.77235 0.77113 1.21916 1.23291 1.19623 1.21357 0.93557 0.85415 0.98169 1.05054 0.74099 0.73233 0.77373 1.30622 1.11733 1.12171 1.28030 1.93604 1.64647 1.62482 1.73269 1.93635 1.44124 1.82655 1.73168 0.91594 0.91018 0.90939 0.86987 0.86986 0.75968 0.91549 0.91838 0.93914 0.90517 0.93371 0.92718 0.92461 0.91466 0.92721 0.91949 0.96073 0.92846 0.95705 0.91333 0.85402 0.85411 0.85234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.85 10.22 59.85 0.61 1.47 16 2 N -0.98 -10.26 2.61 -123.06 -0.32 -10.58 16 3 C 0.10 1.12 5.76 -5.20 -0.03 1.09 16 4 C 0.50 7.61 7.89 -10.98 -0.09 7.52 16 5 O -0.53 -9.98 16.42 5.55 0.09 -9.89 16 6 N -0.72 -11.04 5.00 -60.29 -0.30 -11.34 16 7 C 0.13 2.08 4.57 -4.04 -0.02 2.06 16 8 C -0.09 -1.54 0.53 -154.39 -0.08 -1.62 16 9 C -0.13 -2.09 7.81 37.16 0.29 -1.80 16 10 C -0.10 -1.43 4.71 -26.69 -0.13 -1.55 16 11 C -0.14 -2.10 5.74 -26.61 -0.15 -2.25 16 12 C 0.15 2.73 6.51 -3.71 -0.02 2.70 16 13 N -0.60 -13.30 2.21 -172.32 -0.38 -13.68 16 14 C -0.25 -6.64 10.04 -15.06 -0.15 -6.79 16 15 H 0.09 2.42 8.06 -52.48 -0.42 1.99 16 16 C 0.02 0.61 5.24 -17.43 -0.09 0.52 16 17 N -0.91 -26.24 13.97 55.49 0.78 -25.46 16 18 Si 0.88 21.00 24.35 -169.99 -4.14 16.86 16 19 H -0.29 -6.33 6.70 56.52 0.38 -5.95 16 20 H -0.30 -7.53 7.11 56.52 0.40 -7.12 16 21 H -0.27 -6.55 6.46 56.52 0.36 -6.19 16 22 C 0.14 2.83 2.61 -3.71 -0.01 2.82 16 23 S 2.61 27.47 5.96 -107.50 -0.64 26.83 16 24 C -0.68 -3.68 10.99 101.05 1.11 -2.57 16 25 O -0.95 -13.00 17.09 -57.54 -0.98 -13.98 16 26 O -0.95 -13.55 16.99 -57.54 -0.98 -14.53 16 27 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.07 0.47 7.79 -51.93 -0.40 0.06 16 29 H 0.07 0.51 7.94 -51.93 -0.41 0.09 16 30 H 0.11 0.95 7.96 -51.93 -0.41 0.53 16 31 H 0.11 0.95 7.61 -51.93 -0.40 0.56 16 32 H 0.40 5.92 6.22 -40.82 -0.25 5.66 16 33 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 34 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 35 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.08 1.40 5.97 -51.93 -0.31 1.09 16 37 H 0.05 0.78 6.86 -51.92 -0.36 0.43 16 38 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.07 1.07 6.34 -51.93 -0.33 0.74 16 41 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.06 1.16 7.93 -51.93 -0.41 0.75 16 43 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 45 H 0.03 0.52 6.98 -51.93 -0.36 0.16 16 46 H 0.07 1.46 3.41 -51.93 -0.18 1.29 16 47 H 0.13 0.48 8.14 -51.92 -0.42 0.06 16 48 H 0.13 0.55 8.14 -51.92 -0.42 0.13 16 49 H 0.13 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 388.43 15.07 5.85 5.85 Total: -1.00 -36.51 388.43 -7.88 -44.38 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: -8.09 Total: 3.94 kcal Atomic # 6 Polarization: 0.35 SS G_CDS: 1.24 Total: 1.59 kcal Atomic # 7 Polarization: -60.83 SS G_CDS: -0.23 Total: -61.05 kcal Atomic # 8 Polarization: -36.53 SS G_CDS: -1.87 Total: -38.40 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -4.14 Total: 16.86 kcal Atomic # 16 Polarization: 27.47 SS G_CDS: -0.64 Total: 26.83 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -36.51 -7.88 -44.38 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716897029.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.282 kcal (2) G-P(sol) polarization free energy of solvation -36.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.18 seconds