Wall clock time and date at job start Wed Apr 1 2020 04:41:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46495 * 120.00183 * 2 1 4 4 C 1.50698 * 109.47405 * 275.00136 * 3 2 1 5 5 O 1.21284 * 119.99753 * 359.97438 * 4 3 2 6 6 N 1.34781 * 120.00476 * 179.97438 * 4 3 2 7 7 C 1.46504 * 119.99898 * 179.97438 * 6 4 3 8 8 C 1.52998 * 109.46722 * 179.97438 * 7 6 4 9 9 C 1.53001 * 109.49878 * 59.93634 * 8 7 6 10 10 C 1.53035 * 109.49656 * 180.02562 * 8 7 6 11 11 C 1.53048 * 109.53781 * 181.31832 * 10 8 7 12 12 C 1.53184 * 109.31090 * 298.63583 * 11 10 8 13 13 N 1.46926 * 108.78128 * 54.63354 * 12 11 10 14 14 C 1.36933 * 120.63144 * 126.39071 * 13 12 11 15 15 H 1.08006 * 119.99645 * 332.75745 * 14 13 12 16 16 C 1.38815 * 119.99975 * 152.76032 * 14 13 12 17 17 N 1.31617 * 119.99789 * 159.75067 * 16 14 13 18 18 Si 1.86798 * 119.99953 * 339.74837 * 16 14 13 19 19 H 1.48500 * 109.46787 * 94.91318 * 18 16 14 20 20 H 1.48496 * 109.47018 * 214.91280 * 18 16 14 21 21 H 1.48501 * 109.46975 * 334.91962 * 18 16 14 22 22 C 1.46922 * 118.73669 * 306.39343 * 13 12 11 23 23 S 1.65599 * 119.99695 * 180.02562 * 2 1 3 24 24 C 1.81402 * 104.44709 * 269.99740 * 23 2 1 25 25 O 1.42095 * 104.28064 * 26.06773 * 23 2 1 26 26 O 1.42099 * 104.27736 * 153.93220 * 23 2 1 27 27 H 1.09000 * 109.47182 * 89.99867 * 1 2 3 28 28 H 1.08993 * 109.47249 * 210.00072 * 1 2 3 29 29 H 1.09001 * 109.47083 * 330.00300 * 1 2 3 30 30 H 1.09006 * 109.47109 * 34.99784 * 3 2 1 31 31 H 1.08998 * 109.47324 * 154.99883 * 3 2 1 32 32 H 0.96998 * 119.99752 * 359.97438 * 6 4 3 33 33 H 1.08997 * 109.47026 * 299.99889 * 7 6 4 34 34 H 1.09001 * 109.47014 * 60.00293 * 7 6 4 35 35 H 1.09003 * 109.47383 * 59.99793 * 9 8 7 36 36 H 1.08996 * 109.47477 * 180.02562 * 9 8 7 37 37 H 1.09007 * 109.47173 * 300.00215 * 9 8 7 38 38 H 1.08999 * 109.45974 * 301.33411 * 10 8 7 39 39 H 1.08994 * 109.46531 * 61.29675 * 10 8 7 40 40 H 1.08999 * 109.49684 * 58.58713 * 11 10 8 41 41 H 1.09003 * 109.49681 * 178.67930 * 11 10 8 42 42 H 1.09000 * 109.58613 * 174.42419 * 12 11 10 43 43 H 1.09006 * 109.58621 * 294.84500 * 12 11 10 44 44 H 0.97002 * 119.99511 * 180.02562 * 17 16 14 45 45 H 1.08999 * 109.59228 * 293.81909 * 22 13 12 46 46 H 1.08998 * 109.58893 * 173.38906 * 22 13 12 47 47 H 1.09001 * 109.47127 * 60.00368 * 24 23 2 48 48 H 1.09007 * 109.46815 * 180.02562 * 24 23 2 49 49 H 1.08996 * 109.47185 * 300.00055 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3415 1.7657 -1.4154 5 8 1.8782 1.1231 -2.3337 6 7 2.9850 2.9242 -1.6607 7 6 3.1254 3.4070 -3.0368 8 6 3.8892 4.7327 -3.0366 9 6 5.2757 4.5231 -2.4247 10 6 4.0356 5.2379 -4.4737 11 6 4.8281 6.5473 -4.4777 12 6 4.0668 7.6026 -3.6693 13 7 3.7946 7.0661 -2.3289 14 6 4.1651 7.7630 -1.2100 15 1 5.0031 8.4432 -1.2503 16 6 3.4637 7.5953 -0.0238 17 7 4.0204 7.9255 1.1222 18 14 1.7298 6.9010 -0.0542 19 1 1.7795 5.4352 0.1789 20 1 0.9202 7.5446 1.0113 21 1 1.1117 7.1710 -1.3772 22 6 3.1173 5.7676 -2.2119 23 16 2.2929 -1.4342 -0.0006 24 6 2.5193 -1.8269 1.7558 25 8 1.3969 -2.3559 -0.6062 26 8 3.5395 -1.1189 -0.6056 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 -0.8899 0.5138 29 1 -0.3633 0.8900 0.5138 30 1 1.6501 2.0043 0.5894 31 1 3.1858 1.1176 0.4343 32 1 3.3552 3.4383 -0.9262 33 1 3.6734 2.6716 -3.6257 34 1 2.1372 3.5575 -3.4716 35 1 5.8250 3.7877 -3.0125 36 1 5.8194 5.4679 -2.4243 37 1 5.1706 4.1645 -1.4006 38 1 4.5632 4.4925 -5.0687 39 1 3.0477 5.4102 -4.9006 40 1 5.8072 6.3813 -4.0284 41 1 4.9522 6.8943 -5.5035 42 1 4.6719 8.5054 -3.5856 43 1 3.1258 7.8358 -4.1676 44 1 3.5304 7.8079 1.9510 45 1 2.0989 5.8510 -2.5913 46 1 3.0959 5.4594 -1.1666 47 1 1.5451 -1.9197 2.2359 48 1 3.0626 -2.7671 1.8508 49 1 3.0866 -1.0297 2.2362 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716897029.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:42 Heat of formation + Delta-G solvation = -102.867790 kcal Electronic energy + Delta-G solvation = -30648.713366 eV Core-core repulsion = 26545.016761 eV Total energy + Delta-G solvation = -4103.696605 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.17048 -40.00529 -38.23338 -37.12455 -36.86503 -36.24446 -34.89319 -33.21578 -32.28247 -30.32797 -29.95477 -28.07761 -27.31704 -27.05603 -25.72250 -24.12586 -22.16006 -21.59896 -20.09365 -19.80582 -18.75388 -18.63380 -18.43162 -17.59631 -17.24151 -17.07676 -16.57091 -16.43602 -15.94362 -15.45029 -15.41916 -15.26474 -15.24125 -14.88707 -14.69893 -14.24727 -14.12092 -13.94048 -13.92340 -13.84748 -13.71668 -13.54177 -13.32908 -13.18349 -13.15749 -12.85161 -12.64966 -12.59340 -12.51699 -12.30357 -12.08710 -11.95994 -11.93780 -11.60317 -11.50981 -11.40045 -11.18587 -11.07304 -10.59605 -10.09716 -10.01124 -8.85496 -8.10056 -5.41223 -0.77408 1.27180 1.45789 1.53011 1.54687 1.61555 2.25322 2.44192 2.99697 3.09665 3.12047 3.36157 3.56882 3.78721 3.81900 3.88691 3.90999 4.06335 4.15204 4.23873 4.31520 4.38996 4.41630 4.45905 4.59239 4.64609 4.71076 4.72823 4.80157 4.86313 4.92302 4.96663 4.98690 5.03559 5.06939 5.14836 5.15804 5.29690 5.32515 5.37314 5.44806 5.47732 5.68100 5.92648 6.19197 6.49157 6.97221 7.19984 7.68004 8.09715 9.09904 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.014540 B = 0.003313 C = 0.002973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1925.196391 B = 8448.316233 C = 9416.645389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.988 5.988 3 C 0.100 3.900 4 C 0.486 3.514 5 O -0.575 6.575 6 N -0.725 5.725 7 C 0.137 3.863 8 C -0.084 4.084 9 C -0.123 4.123 10 C -0.095 4.095 11 C -0.126 4.126 12 C 0.139 3.861 13 N -0.614 5.614 14 C -0.243 4.243 15 H 0.051 0.949 16 C -0.028 4.028 17 N -0.954 5.954 18 Si 0.936 3.064 19 H -0.257 1.257 20 H -0.316 1.316 21 H -0.276 1.276 22 C 0.141 3.859 23 S 2.600 3.400 24 C -0.641 4.641 25 O -0.995 6.995 26 O -0.996 6.996 27 H 0.033 0.967 28 H 0.095 0.905 29 H 0.095 0.905 30 H 0.143 0.857 31 H 0.137 0.863 32 H 0.408 0.592 33 H 0.069 0.931 34 H 0.058 0.942 35 H 0.062 0.938 36 H 0.054 0.946 37 H 0.044 0.956 38 H 0.079 0.921 39 H 0.062 0.938 40 H 0.060 0.940 41 H 0.084 0.916 42 H 0.053 0.947 43 H 0.028 0.972 44 H 0.261 0.739 45 H 0.020 0.980 46 H 0.056 0.944 47 H 0.155 0.845 48 H 0.146 0.854 49 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.936 -17.213 0.964 17.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.823 5.823 3 C -0.030 4.030 4 C 0.272 3.728 5 O -0.455 6.455 6 N -0.378 5.378 7 C 0.013 3.987 8 C -0.086 4.086 9 C -0.180 4.180 10 C -0.133 4.133 11 C -0.165 4.165 12 C 0.014 3.986 13 N -0.338 5.338 14 C -0.372 4.372 15 H 0.069 0.931 16 C -0.223 4.223 17 N -0.600 5.600 18 Si 0.766 3.234 19 H -0.182 1.182 20 H -0.246 1.246 21 H -0.202 1.202 22 C 0.016 3.984 23 S 2.698 3.302 24 C -0.795 4.795 25 O -0.986 6.986 26 O -0.986 6.986 27 H 0.052 0.948 28 H 0.113 0.887 29 H 0.114 0.886 30 H 0.160 0.840 31 H 0.154 0.846 32 H 0.244 0.756 33 H 0.087 0.913 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.073 0.927 37 H 0.063 0.937 38 H 0.097 0.903 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.103 0.897 42 H 0.072 0.928 43 H 0.046 0.954 44 H 0.070 0.930 45 H 0.038 0.962 46 H 0.074 0.926 47 H 0.173 0.827 48 H 0.164 0.836 49 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -4.036 -18.103 -0.341 18.551 hybrid contribution -0.721 0.673 1.043 1.435 sum -4.757 -17.430 0.702 18.081 Atomic orbital electron populations 1.21639 0.77040 1.04898 1.01918 1.57028 1.15965 1.19651 1.89705 1.21412 1.00958 0.88010 0.92586 1.21947 0.77010 0.80320 0.93495 1.90661 1.49653 1.57491 1.47660 1.46186 1.57691 1.23716 1.10198 1.21322 0.99834 0.94570 0.82979 1.21227 0.96397 0.93017 0.97923 1.21674 0.95258 1.01489 0.99595 1.21393 1.00769 0.97456 0.93713 1.21936 0.99074 0.95287 1.00195 1.21148 0.97299 0.95795 0.84365 1.44397 1.69632 1.17634 1.02148 1.18838 1.09034 1.21305 0.88067 0.93115 1.25777 1.00967 1.00553 0.94956 1.69958 1.38187 1.54091 0.97779 0.86082 0.82570 0.78664 0.76134 1.18224 1.24560 1.20175 1.21337 0.93578 0.85368 0.98153 1.05076 0.72679 0.72682 0.79771 1.30309 1.14136 1.13843 1.21235 1.93543 1.65373 1.63496 1.76166 1.93568 1.45689 1.83167 1.76185 0.94818 0.88664 0.88633 0.83955 0.84557 0.75565 0.91262 0.92334 0.91888 0.92701 0.93735 0.90284 0.91916 0.92114 0.89729 0.92834 0.95369 0.92958 0.96225 0.92629 0.82677 0.83572 0.82826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.45 10.22 127.77 1.31 2.76 16 2 N -0.99 -18.71 2.61 -543.24 -1.42 -20.12 16 3 C 0.10 1.92 5.76 85.63 0.49 2.41 16 4 C 0.49 14.33 7.89 87.66 0.69 15.03 16 5 O -0.58 -21.53 16.42 -3.04 -0.05 -21.58 16 6 N -0.72 -20.97 5.00 -463.05 -2.31 -23.28 16 7 C 0.14 4.09 4.57 86.38 0.39 4.49 16 8 C -0.08 -2.59 0.53 -52.10 -0.03 -2.62 16 9 C -0.12 -3.83 7.81 71.98 0.56 -3.27 16 10 C -0.10 -2.58 4.71 30.62 0.14 -2.44 16 11 C -0.13 -3.60 5.74 30.67 0.18 -3.42 16 12 C 0.14 5.05 6.51 86.36 0.56 5.61 16 13 N -0.61 -26.94 2.21 -699.10 -1.55 -28.49 16 14 C -0.24 -12.97 10.04 84.03 0.84 -12.13 16 15 H 0.05 3.01 8.06 -2.91 -0.02 2.98 16 16 C -0.03 -1.51 5.24 84.86 0.44 -1.07 16 17 N -0.95 -56.31 13.97 21.65 0.30 -56.01 16 18 Si 0.94 43.18 24.35 68.60 1.67 44.85 16 19 H -0.26 -10.25 6.70 99.48 0.67 -9.58 16 20 H -0.32 -15.14 7.11 99.48 0.71 -14.43 16 21 H -0.28 -12.86 6.46 99.48 0.64 -12.21 16 22 C 0.14 5.47 2.61 86.37 0.23 5.69 16 23 S 2.60 51.14 5.96 -56.49 -0.34 50.80 16 24 C -0.64 -4.09 10.99 113.37 1.25 -2.84 16 25 O -1.00 -27.15 17.09 -127.65 -2.18 -29.34 16 26 O -1.00 -28.17 16.99 -127.65 -2.17 -30.34 16 27 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.09 1.04 7.79 -2.39 -0.02 1.02 16 29 H 0.10 1.07 7.94 -2.39 -0.02 1.05 16 30 H 0.14 1.86 7.96 -2.38 -0.02 1.84 16 31 H 0.14 1.92 7.61 -2.39 -0.02 1.91 16 32 H 0.41 11.17 6.22 -92.71 -0.58 10.60 16 33 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 34 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.05 1.96 5.97 -2.39 -0.01 1.95 16 37 H 0.04 1.39 6.86 -2.38 -0.02 1.38 16 38 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 39 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.06 1.83 6.34 -2.39 -0.02 1.82 16 41 H 0.08 1.94 8.14 -2.39 -0.02 1.93 16 42 H 0.05 2.00 7.93 -2.39 -0.02 1.98 16 43 H 0.03 1.00 8.14 -2.38 -0.02 0.98 16 44 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 45 H 0.02 0.80 6.98 -2.39 -0.02 0.78 16 46 H 0.06 2.29 3.41 -2.39 -0.01 2.28 16 47 H 0.15 0.31 8.14 -2.39 -0.02 0.29 16 48 H 0.15 0.58 8.14 -2.39 -0.02 0.56 16 49 H 0.15 0.42 8.14 -2.39 -0.02 0.40 16 Total: -1.00 -83.56 388.43 -0.71 -84.27 By element: Atomic # 1 Polarization: 20.76 SS G_CDS: 0.27 Total: 21.03 kcal Atomic # 6 Polarization: 1.14 SS G_CDS: 7.06 Total: 8.20 kcal Atomic # 7 Polarization: -122.93 SS G_CDS: -4.97 Total: -127.90 kcal Atomic # 8 Polarization: -76.86 SS G_CDS: -4.40 Total: -81.26 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 1.67 Total: 44.85 kcal Atomic # 16 Polarization: 51.14 SS G_CDS: -0.34 Total: 50.80 kcal Total: -83.56 -0.71 -84.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716897029.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.594 kcal (2) G-P(sol) polarization free energy of solvation -83.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds