Wall clock time and date at job start Wed Apr 1 2020 04:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46498 * 119.99474 * 2 1 4 4 S 1.65596 * 120.00041 * 180.02562 * 2 1 3 5 5 O 1.42104 * 104.27657 * 333.92531 * 4 2 1 6 6 O 1.42103 * 104.27506 * 206.07380 * 4 2 1 7 7 C 1.81397 * 104.45019 * 90.00037 * 4 2 1 8 8 C 1.53001 * 109.46902 * 179.97438 * 7 4 2 9 9 C 1.50703 * 109.46984 * 179.97438 * 8 7 4 10 10 O 1.21281 * 119.99830 * 0.02562 * 9 8 7 11 11 N 1.34780 * 119.99874 * 179.97438 * 9 8 7 12 12 C 1.46502 * 119.99853 * 180.02562 * 11 9 8 13 13 C 1.52999 * 109.45811 * 60.00114 * 12 11 9 14 14 C 1.53042 * 109.46065 * 300.03107 * 12 11 9 15 15 C 1.53160 * 109.32495 * 301.35770 * 14 12 11 16 16 N 1.46933 * 108.76899 * 305.35585 * 15 14 12 17 17 C 1.36940 * 120.63020 * 233.63082 * 16 15 14 18 18 H 1.08001 * 119.99648 * 151.80939 * 17 16 15 19 19 C 1.38814 * 120.00060 * 331.81042 * 17 16 15 20 20 N 1.31613 * 119.99709 * 343.08144 * 19 17 16 21 21 Si 1.86799 * 119.99715 * 163.08171 * 19 17 16 22 22 H 1.48501 * 109.47062 * 90.00044 * 21 19 17 23 23 H 1.48497 * 109.46930 * 209.99843 * 21 19 17 24 24 H 1.48494 * 109.47340 * 329.99869 * 21 19 17 25 25 C 1.46929 * 118.73460 * 53.60954 * 16 15 14 26 26 C 1.53039 * 109.46143 * 179.97438 * 12 11 9 27 27 H 1.08994 * 109.47328 * 269.99992 * 1 2 3 28 28 H 1.08999 * 109.46744 * 30.00443 * 1 2 3 29 29 H 1.08998 * 109.46773 * 149.99835 * 1 2 3 30 30 H 1.09001 * 109.46995 * 269.99338 * 3 2 1 31 31 H 1.09000 * 109.47676 * 30.00331 * 3 2 1 32 32 H 1.09005 * 109.46710 * 149.99878 * 3 2 1 33 33 H 1.08997 * 109.47178 * 60.00270 * 7 4 2 34 34 H 1.08994 * 109.47286 * 299.99496 * 7 4 2 35 35 H 1.08996 * 109.47455 * 299.99843 * 8 7 4 36 36 H 1.08999 * 109.47270 * 60.00410 * 8 7 4 37 37 H 0.96997 * 119.99914 * 0.02562 * 11 9 8 38 38 H 1.09002 * 109.47462 * 59.99827 * 13 12 11 39 39 H 1.08998 * 109.47152 * 179.97438 * 13 12 11 40 40 H 1.08998 * 109.47681 * 299.99773 * 13 12 11 41 41 H 1.09001 * 109.49761 * 61.29345 * 14 12 11 42 42 H 1.09002 * 109.49507 * 181.39152 * 14 12 11 43 43 H 1.09000 * 109.59095 * 185.57275 * 15 14 12 44 44 H 1.09000 * 109.71288 * 65.20995 * 15 14 12 45 45 H 0.97008 * 119.99530 * 179.97438 * 20 19 17 46 46 H 1.09002 * 109.57953 * 186.60433 * 25 16 15 47 47 H 1.08997 * 109.70429 * 66.25426 * 25 16 15 48 48 H 1.08998 * 109.49543 * 178.60854 * 26 12 11 49 49 H 1.09001 * 109.49731 * 298.67345 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 16 2.2931 -1.4341 -0.0006 5 8 1.3970 -2.3564 0.6043 6 8 3.5395 -1.1193 0.6048 7 6 2.5194 -1.8253 -1.7574 8 6 3.2820 -3.1449 -1.8918 9 6 3.4695 -3.4702 -3.3513 10 8 3.0363 -2.7203 -4.2003 11 7 4.1196 -4.5941 -3.7131 12 6 4.3024 -4.9101 -5.1319 13 6 5.0977 -3.7898 -5.8052 14 6 2.9344 -5.0402 -5.8056 15 6 2.1277 -6.1388 -5.1070 16 7 2.9189 -7.3769 -5.1041 17 6 2.3942 -8.5413 -5.5984 18 1 3.0473 -9.2933 -6.0161 19 6 1.0231 -8.7550 -5.5625 20 7 0.2634 -8.0229 -4.7757 21 14 0.2564 -10.0816 -6.6310 22 1 0.2253 -11.3637 -5.8822 23 1 -1.1283 -9.6864 -6.9935 24 1 1.0628 -10.2495 -7.8666 25 6 4.2837 -7.3418 -4.5613 26 6 5.0662 -6.2294 -5.2662 27 1 -0.3634 0.0000 1.0276 28 1 -0.3633 0.8900 -0.5139 29 1 -0.3633 -0.8900 -0.5139 30 1 2.3792 1.5834 -1.0277 31 1 1.6084 2.0284 0.5139 32 1 3.1499 1.1385 0.5139 33 1 3.0867 -1.0278 -2.2371 34 1 1.5453 -1.9178 -2.2375 35 1 4.2562 -3.0521 -1.4119 36 1 2.7151 -3.9427 -1.4121 37 1 4.4664 -5.1937 -3.0341 38 1 6.0719 -3.6966 -5.3252 39 1 5.2342 -4.0249 -6.8608 40 1 4.5541 -2.8500 -5.7094 41 1 2.4001 -4.0931 -5.7301 42 1 3.0692 -5.2996 -6.8557 43 1 1.1934 -6.3035 -5.6436 44 1 1.9122 -5.8406 -4.0810 45 1 -0.6948 -8.1720 -4.7509 46 1 4.7719 -8.3003 -4.7379 47 1 4.2483 -7.1416 -3.4904 48 1 5.1809 -6.4776 -6.3213 49 1 6.0497 -6.1287 -4.8071 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724025107.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:02 Heat of formation + Delta-G solvation = -80.786334 kcal Electronic energy + Delta-G solvation = -30179.890275 eV Core-core repulsion = 26077.151193 eV Total energy + Delta-G solvation = -4102.739082 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 2.22 seconds Orbital eigenvalues (eV) -40.17124 -37.55055 -37.36200 -36.51832 -36.06260 -34.47038 -33.32361 -31.88871 -30.73766 -29.92046 -28.41501 -27.45626 -25.58703 -24.73427 -24.04650 -22.30338 -21.21260 -20.30765 -19.12418 -18.69314 -18.11609 -17.15111 -16.89138 -16.67060 -16.15616 -15.70345 -14.92782 -14.84921 -14.72699 -14.67964 -14.06653 -13.71788 -13.65709 -13.46123 -13.34336 -13.29300 -13.03962 -12.92082 -12.68273 -12.64418 -12.35901 -12.26844 -11.93430 -11.90007 -11.80263 -11.66201 -11.60549 -11.43493 -11.12251 -11.03507 -10.93208 -10.71584 -10.41709 -10.26774 -9.98886 -9.78186 -9.58910 -9.39135 -9.14131 -8.63625 -8.46486 -6.66970 -5.79130 -3.22135 -0.01209 2.34286 2.84341 3.34903 3.36845 3.44118 3.46135 3.66283 3.93118 4.19979 4.42972 4.48942 4.60187 4.83036 4.99151 5.03945 5.14512 5.25787 5.27351 5.34182 5.37308 5.42346 5.44850 5.48695 5.50331 5.56268 5.58442 5.66613 5.92570 5.98431 6.09795 6.14769 6.18001 6.33702 6.43042 6.47765 6.64850 6.70973 6.77811 6.89951 7.04973 7.39183 7.68355 7.78775 7.84053 8.44589 8.48673 9.20818 9.84196 10.40752 11.28926 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.014324 B = 0.002825 C = 0.002545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1954.319432 B = 9909.106085 C =11000.567871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -1.009 6.009 3 C 0.082 3.918 4 S 2.609 3.391 5 O -0.948 6.948 6 O -0.955 6.955 7 C -0.606 4.606 8 C -0.138 4.138 9 C 0.526 3.474 10 O -0.537 6.537 11 N -0.709 5.709 12 C 0.183 3.817 13 C -0.160 4.160 14 C -0.151 4.151 15 C 0.177 3.823 16 N -0.591 5.591 17 C -0.255 4.255 18 H 0.064 0.936 19 C 0.003 3.997 20 N -0.900 5.900 21 Si 0.901 3.099 22 H -0.287 1.287 23 H -0.290 1.290 24 H -0.280 1.280 25 C 0.145 3.855 26 C -0.137 4.137 27 H 0.059 0.941 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.055 0.945 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.137 0.863 34 H 0.141 0.859 35 H 0.105 0.895 36 H 0.110 0.890 37 H 0.399 0.601 38 H 0.046 0.954 39 H 0.059 0.941 40 H 0.073 0.927 41 H 0.071 0.929 42 H 0.059 0.941 43 H 0.084 0.916 44 H 0.016 0.984 45 H 0.253 0.747 46 H 0.055 0.945 47 H 0.014 0.986 48 H 0.074 0.926 49 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.213 17.646 7.559 20.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.848 5.848 3 C -0.064 4.064 4 S 2.702 3.298 5 O -0.938 6.938 6 O -0.946 6.946 7 C -0.736 4.736 8 C -0.180 4.180 9 C 0.310 3.690 10 O -0.414 6.414 11 N -0.360 5.360 12 C 0.098 3.902 13 C -0.218 4.218 14 C -0.191 4.191 15 C 0.051 3.949 16 N -0.314 5.314 17 C -0.384 4.384 18 H 0.082 0.918 19 C -0.196 4.196 20 N -0.544 5.544 21 Si 0.731 3.269 22 H -0.214 1.214 23 H -0.216 1.216 24 H -0.205 1.205 25 C 0.018 3.982 26 C -0.177 4.177 27 H 0.078 0.922 28 H 0.091 0.909 29 H 0.093 0.907 30 H 0.074 0.926 31 H 0.094 0.906 32 H 0.103 0.897 33 H 0.156 0.844 34 H 0.159 0.841 35 H 0.123 0.877 36 H 0.128 0.872 37 H 0.234 0.766 38 H 0.065 0.935 39 H 0.078 0.922 40 H 0.092 0.908 41 H 0.089 0.911 42 H 0.078 0.922 43 H 0.102 0.898 44 H 0.034 0.966 45 H 0.064 0.936 46 H 0.074 0.926 47 H 0.032 0.968 48 H 0.093 0.907 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 5.964 17.712 7.731 20.225 hybrid contribution -0.475 -0.793 -0.937 1.317 sum 5.488 16.919 6.794 19.040 Atomic orbital electron populations 1.21511 0.78001 1.03290 1.02494 1.57338 1.15389 1.21786 1.90250 1.21621 0.97529 0.85146 1.02084 1.05159 0.73930 0.73149 0.77536 1.93625 1.64416 1.62268 1.73517 1.93576 1.44233 1.82988 1.73773 1.30395 1.10999 1.06042 1.26171 1.21383 1.02406 0.96419 0.97758 1.19958 0.77775 0.81354 0.89917 1.90617 1.49184 1.49545 1.52081 1.46089 1.57513 1.23467 1.08914 1.20298 0.96509 0.93899 0.79504 1.22226 0.99256 1.00183 1.00162 1.22578 0.95463 1.01364 0.99681 1.20684 0.94292 0.82884 0.96993 1.44061 1.10629 1.06204 1.70467 1.19149 0.90698 0.96080 1.32508 0.91795 1.25045 0.97471 0.98506 0.98531 1.70034 1.04720 1.42179 1.37511 0.86322 0.78570 0.81461 0.80549 1.21415 1.21576 1.20530 1.20864 0.87362 0.95714 0.94238 1.22336 0.97556 0.95176 1.02629 0.92204 0.90920 0.90706 0.92624 0.90649 0.89723 0.84435 0.84120 0.87706 0.87195 0.76639 0.93478 0.92238 0.90842 0.91094 0.92214 0.89812 0.96577 0.93648 0.92609 0.96815 0.90696 0.92594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.66 10.20 59.85 0.61 1.27 16 2 N -1.01 -8.49 3.52 -129.20 -0.45 -8.94 16 3 C 0.08 0.52 10.64 59.85 0.64 1.16 16 4 S 2.61 27.58 5.38 -107.50 -0.58 27.00 16 5 O -0.95 -13.18 17.09 -57.54 -0.98 -14.16 16 6 O -0.96 -12.11 16.57 -57.54 -0.95 -13.07 16 7 C -0.61 -6.14 5.47 37.16 0.20 -5.93 16 8 C -0.14 -1.59 5.71 -27.88 -0.16 -1.75 16 9 C 0.53 7.89 7.25 -10.98 -0.08 7.81 16 10 O -0.54 -9.40 12.20 5.56 0.07 -9.33 16 11 N -0.71 -10.59 4.10 -47.57 -0.20 -10.79 16 12 C 0.18 3.00 0.66 -131.78 -0.09 2.91 16 13 C -0.16 -2.34 8.40 37.16 0.31 -2.03 16 14 C -0.15 -3.00 4.66 -26.63 -0.12 -3.13 16 15 C 0.18 4.23 5.04 -3.72 -0.02 4.21 16 16 N -0.59 -14.36 2.99 -172.33 -0.52 -14.88 16 17 C -0.25 -6.89 9.58 -15.06 -0.14 -7.04 16 18 H 0.06 1.70 7.89 -52.49 -0.41 1.28 16 19 C 0.00 0.09 4.92 -17.43 -0.09 0.00 16 20 N -0.90 -26.11 11.20 55.49 0.62 -25.49 16 21 Si 0.90 21.65 29.59 -169.99 -5.03 16.62 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 24 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 25 C 0.15 2.83 6.24 -3.71 -0.02 2.80 16 26 C -0.14 -2.20 4.96 -26.62 -0.13 -2.33 16 27 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.07 0.36 8.07 -51.93 -0.42 -0.06 16 29 H 0.07 0.54 7.79 -51.93 -0.40 0.13 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 31 H 0.07 0.36 8.07 -51.93 -0.42 -0.06 16 32 H 0.08 0.59 6.91 -51.93 -0.36 0.23 16 33 H 0.14 1.23 8.10 -51.93 -0.42 0.80 16 34 H 0.14 1.44 8.10 -51.93 -0.42 1.01 16 35 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.11 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.40 5.23 7.27 -40.82 -0.30 4.94 16 38 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.07 1.17 6.17 -51.93 -0.32 0.85 16 41 H 0.07 1.46 6.20 -51.93 -0.32 1.13 16 42 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 43 H 0.08 2.30 6.06 -51.93 -0.31 1.98 16 44 H 0.02 0.41 7.74 -51.93 -0.40 0.00 16 45 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 46 H 0.06 1.07 7.93 -51.93 -0.41 0.66 16 47 H 0.01 0.26 6.94 -51.93 -0.36 -0.10 16 48 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 49 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 392.51 15.07 5.92 5.92 Total: -1.00 -35.77 392.51 -9.42 -45.19 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: -8.22 Total: 3.97 kcal Atomic # 6 Polarization: -2.95 SS G_CDS: 0.91 Total: -2.04 kcal Atomic # 7 Polarization: -59.55 SS G_CDS: -0.54 Total: -60.10 kcal Atomic # 8 Polarization: -34.69 SS G_CDS: -1.87 Total: -36.56 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.03 Total: 16.62 kcal Atomic # 16 Polarization: 27.58 SS G_CDS: -0.58 Total: 27.00 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -35.77 -9.42 -45.19 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724025107.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.594 kcal (2) G-P(sol) polarization free energy of solvation -35.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.22 seconds