Wall clock time and date at job start Wed Apr 1 2020 04:44:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46498 * 119.99474 * 2 1 4 4 S 1.65596 * 120.00041 * 180.02562 * 2 1 3 5 5 O 1.42104 * 104.27657 * 333.92531 * 4 2 1 6 6 O 1.42103 * 104.27506 * 206.07380 * 4 2 1 7 7 C 1.81397 * 104.45019 * 90.00037 * 4 2 1 8 8 C 1.53001 * 109.46902 * 179.97438 * 7 4 2 9 9 C 1.50703 * 109.46984 * 179.97438 * 8 7 4 10 10 O 1.21281 * 119.99830 * 0.02562 * 9 8 7 11 11 N 1.34780 * 119.99874 * 179.97438 * 9 8 7 12 12 C 1.46502 * 119.99853 * 180.02562 * 11 9 8 13 13 C 1.52999 * 109.45811 * 60.00114 * 12 11 9 14 14 C 1.53042 * 109.46065 * 300.03107 * 12 11 9 15 15 C 1.53160 * 109.32495 * 301.35770 * 14 12 11 16 16 N 1.46933 * 108.76899 * 305.35585 * 15 14 12 17 17 C 1.36940 * 120.63020 * 233.63082 * 16 15 14 18 18 H 1.08001 * 119.99648 * 151.80939 * 17 16 15 19 19 C 1.38814 * 120.00060 * 331.81042 * 17 16 15 20 20 N 1.31613 * 119.99709 * 343.08144 * 19 17 16 21 21 Si 1.86799 * 119.99715 * 163.08171 * 19 17 16 22 22 H 1.48501 * 109.47062 * 90.00044 * 21 19 17 23 23 H 1.48497 * 109.46930 * 209.99843 * 21 19 17 24 24 H 1.48494 * 109.47340 * 329.99869 * 21 19 17 25 25 C 1.46929 * 118.73460 * 53.60954 * 16 15 14 26 26 C 1.53039 * 109.46143 * 179.97438 * 12 11 9 27 27 H 1.08994 * 109.47328 * 269.99992 * 1 2 3 28 28 H 1.08999 * 109.46744 * 30.00443 * 1 2 3 29 29 H 1.08998 * 109.46773 * 149.99835 * 1 2 3 30 30 H 1.09001 * 109.46995 * 269.99338 * 3 2 1 31 31 H 1.09000 * 109.47676 * 30.00331 * 3 2 1 32 32 H 1.09005 * 109.46710 * 149.99878 * 3 2 1 33 33 H 1.08997 * 109.47178 * 60.00270 * 7 4 2 34 34 H 1.08994 * 109.47286 * 299.99496 * 7 4 2 35 35 H 1.08996 * 109.47455 * 299.99843 * 8 7 4 36 36 H 1.08999 * 109.47270 * 60.00410 * 8 7 4 37 37 H 0.96997 * 119.99914 * 0.02562 * 11 9 8 38 38 H 1.09002 * 109.47462 * 59.99827 * 13 12 11 39 39 H 1.08998 * 109.47152 * 179.97438 * 13 12 11 40 40 H 1.08998 * 109.47681 * 299.99773 * 13 12 11 41 41 H 1.09001 * 109.49761 * 61.29345 * 14 12 11 42 42 H 1.09002 * 109.49507 * 181.39152 * 14 12 11 43 43 H 1.09000 * 109.59095 * 185.57275 * 15 14 12 44 44 H 1.09000 * 109.71288 * 65.20995 * 15 14 12 45 45 H 0.97008 * 119.99530 * 179.97438 * 20 19 17 46 46 H 1.09002 * 109.57953 * 186.60433 * 25 16 15 47 47 H 1.08997 * 109.70429 * 66.25426 * 25 16 15 48 48 H 1.08998 * 109.49543 * 178.60854 * 26 12 11 49 49 H 1.09001 * 109.49731 * 298.67345 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 16 2.2931 -1.4341 -0.0006 5 8 1.3970 -2.3564 0.6043 6 8 3.5395 -1.1193 0.6048 7 6 2.5194 -1.8253 -1.7574 8 6 3.2820 -3.1449 -1.8918 9 6 3.4695 -3.4702 -3.3513 10 8 3.0363 -2.7203 -4.2003 11 7 4.1196 -4.5941 -3.7131 12 6 4.3024 -4.9101 -5.1319 13 6 5.0977 -3.7898 -5.8052 14 6 2.9344 -5.0402 -5.8056 15 6 2.1277 -6.1388 -5.1070 16 7 2.9189 -7.3769 -5.1041 17 6 2.3942 -8.5413 -5.5984 18 1 3.0473 -9.2933 -6.0161 19 6 1.0231 -8.7550 -5.5625 20 7 0.2634 -8.0229 -4.7757 21 14 0.2564 -10.0816 -6.6310 22 1 0.2253 -11.3637 -5.8822 23 1 -1.1283 -9.6864 -6.9935 24 1 1.0628 -10.2495 -7.8666 25 6 4.2837 -7.3418 -4.5613 26 6 5.0662 -6.2294 -5.2662 27 1 -0.3634 0.0000 1.0276 28 1 -0.3633 0.8900 -0.5139 29 1 -0.3633 -0.8900 -0.5139 30 1 2.3792 1.5834 -1.0277 31 1 1.6084 2.0284 0.5139 32 1 3.1499 1.1385 0.5139 33 1 3.0867 -1.0278 -2.2371 34 1 1.5453 -1.9178 -2.2375 35 1 4.2562 -3.0521 -1.4119 36 1 2.7151 -3.9427 -1.4121 37 1 4.4664 -5.1937 -3.0341 38 1 6.0719 -3.6966 -5.3252 39 1 5.2342 -4.0249 -6.8608 40 1 4.5541 -2.8500 -5.7094 41 1 2.4001 -4.0931 -5.7301 42 1 3.0692 -5.2996 -6.8557 43 1 1.1934 -6.3035 -5.6436 44 1 1.9122 -5.8406 -4.0810 45 1 -0.6948 -8.1720 -4.7509 46 1 4.7719 -8.3003 -4.7379 47 1 4.2483 -7.1416 -3.4904 48 1 5.1809 -6.4776 -6.3213 49 1 6.0497 -6.1287 -4.8071 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724025107.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:01 Heat of formation + Delta-G solvation = -107.341596 kcal Electronic energy + Delta-G solvation = -30181.041798 eV Core-core repulsion = 26077.151193 eV Total energy + Delta-G solvation = -4103.890604 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.45729 -38.99500 -38.30243 -37.25212 -36.89454 -36.15249 -34.34013 -33.55242 -32.20086 -31.59235 -29.07765 -28.94282 -26.50550 -25.88891 -25.38236 -23.92983 -22.73306 -21.60984 -20.19058 -19.90764 -19.01723 -18.72245 -18.07473 -17.50416 -17.16373 -16.84376 -16.64466 -16.24592 -15.71295 -15.49708 -15.40226 -15.22463 -14.98335 -14.84143 -14.81229 -14.35882 -14.05846 -13.99797 -13.57798 -13.51960 -13.34383 -13.26972 -13.21975 -13.19355 -12.97164 -12.83942 -12.62104 -12.59548 -12.55772 -12.51067 -12.40551 -12.25014 -11.98010 -11.91973 -11.74969 -11.33136 -11.29676 -10.53052 -10.50292 -9.99315 -9.94071 -8.65358 -7.87038 -5.32030 -0.84810 1.44698 1.46850 1.55852 1.59800 1.68311 2.26313 2.50835 2.78348 3.10896 3.28217 3.33727 3.66953 3.75054 3.79117 3.85248 3.98695 4.08569 4.14883 4.35120 4.45294 4.49798 4.51960 4.57312 4.69165 4.71871 4.76779 4.82202 4.83624 4.89021 4.96456 4.96881 5.00057 5.05732 5.06010 5.15250 5.22511 5.35464 5.38715 5.50809 5.55951 5.63518 5.68970 5.78901 6.39075 6.66880 7.15253 7.32642 7.87899 8.38836 9.18618 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.014324 B = 0.002825 C = 0.002545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1954.319432 B = 9909.106085 C =11000.567871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -1.009 6.009 3 C 0.073 3.927 4 S 2.629 3.371 5 O -0.986 6.986 6 O -0.977 6.977 7 C -0.600 4.600 8 C -0.144 4.144 9 C 0.520 3.480 10 O -0.565 6.565 11 N -0.708 5.708 12 C 0.185 3.815 13 C -0.150 4.150 14 C -0.139 4.139 15 C 0.191 3.809 16 N -0.608 5.608 17 C -0.261 4.261 18 H 0.068 0.932 19 C -0.052 4.052 20 N -0.934 5.934 21 Si 0.964 3.036 22 H -0.284 1.284 23 H -0.296 1.296 24 H -0.270 1.270 25 C 0.138 3.862 26 C -0.124 4.124 27 H 0.060 0.940 28 H 0.098 0.902 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.094 0.906 32 H 0.077 0.923 33 H 0.153 0.847 34 H 0.137 0.863 35 H 0.136 0.864 36 H 0.112 0.888 37 H 0.409 0.591 38 H 0.071 0.929 39 H 0.066 0.934 40 H 0.058 0.942 41 H 0.060 0.940 42 H 0.053 0.947 43 H 0.040 0.960 44 H -0.004 1.004 45 H 0.247 0.753 46 H 0.058 0.942 47 H 0.024 0.976 48 H 0.071 0.929 49 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.192 18.554 7.424 21.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.849 5.849 3 C -0.072 4.072 4 S 2.723 3.277 5 O -0.976 6.976 6 O -0.967 6.967 7 C -0.730 4.730 8 C -0.185 4.185 9 C 0.306 3.694 10 O -0.444 6.444 11 N -0.360 5.360 12 C 0.099 3.901 13 C -0.208 4.208 14 C -0.179 4.179 15 C 0.065 3.935 16 N -0.332 5.332 17 C -0.391 4.391 18 H 0.086 0.914 19 C -0.248 4.248 20 N -0.580 5.580 21 Si 0.792 3.208 22 H -0.210 1.210 23 H -0.223 1.223 24 H -0.195 1.195 25 C 0.013 3.987 26 C -0.163 4.163 27 H 0.078 0.922 28 H 0.117 0.883 29 H 0.088 0.912 30 H 0.091 0.909 31 H 0.113 0.887 32 H 0.095 0.905 33 H 0.171 0.829 34 H 0.155 0.845 35 H 0.154 0.846 36 H 0.130 0.870 37 H 0.245 0.755 38 H 0.090 0.910 39 H 0.085 0.915 40 H 0.077 0.923 41 H 0.079 0.921 42 H 0.071 0.929 43 H 0.058 0.942 44 H 0.014 0.986 45 H 0.056 0.944 46 H 0.076 0.924 47 H 0.042 0.958 48 H 0.090 0.910 49 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 7.992 18.614 7.618 21.642 hybrid contribution -1.081 -1.035 -0.887 1.740 sum 6.910 17.579 6.731 20.052 Atomic orbital electron populations 1.21707 0.77213 1.04380 1.02929 1.57173 1.15918 1.21657 1.90120 1.21854 0.97347 0.84516 1.03485 1.04390 0.73061 0.73012 0.77265 1.93575 1.65332 1.64013 1.74699 1.93541 1.45270 1.83365 1.74515 1.30346 1.10992 1.05983 1.25656 1.21515 1.04416 0.97119 0.95494 1.20512 0.76940 0.80871 0.91112 1.90604 1.50145 1.50435 1.53228 1.46068 1.57624 1.23741 1.08558 1.20208 0.94394 0.95218 0.80272 1.22108 0.99728 0.98330 1.00639 1.22373 0.97302 0.98984 0.99201 1.20347 0.93439 0.84227 0.95472 1.44286 1.12343 1.05467 1.71084 1.19507 0.91027 0.96735 1.31819 0.91411 1.25786 0.98116 1.00908 0.99965 1.70193 1.04395 1.44119 1.39295 0.85336 0.77264 0.79009 0.79197 1.21042 1.22271 1.19537 1.21088 0.85114 0.97452 0.95025 1.22202 0.98652 0.93064 1.02368 0.92178 0.88326 0.91210 0.90877 0.88705 0.90468 0.82910 0.84457 0.84634 0.87025 0.75488 0.91032 0.91529 0.92305 0.92122 0.92871 0.94172 0.98639 0.94366 0.92385 0.95803 0.90995 0.88487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.09 10.20 127.77 1.30 2.39 16 2 N -1.01 -15.72 3.52 -562.68 -1.98 -17.70 16 3 C 0.07 0.79 10.64 127.77 1.36 2.15 16 4 S 2.63 53.83 5.38 -56.49 -0.30 53.53 16 5 O -0.99 -27.60 17.09 -127.65 -2.18 -29.78 16 6 O -0.98 -23.84 16.57 -127.65 -2.12 -25.95 16 7 C -0.60 -11.52 5.47 71.98 0.39 -11.12 16 8 C -0.14 -3.13 5.71 29.85 0.17 -2.96 16 9 C 0.52 15.00 7.25 87.66 0.64 15.63 16 10 O -0.56 -19.42 12.20 -3.03 -0.04 -19.46 16 11 N -0.71 -19.91 4.10 -422.79 -1.73 -21.65 16 12 C 0.18 5.71 0.66 3.63 0.00 5.71 16 13 C -0.15 -3.97 8.40 71.98 0.60 -3.37 16 14 C -0.14 -5.54 4.66 30.66 0.14 -5.40 16 15 C 0.19 9.38 5.04 86.35 0.44 9.81 16 16 N -0.61 -29.68 2.99 -699.15 -2.09 -31.77 16 17 C -0.26 -14.18 9.58 84.03 0.81 -13.38 16 18 H 0.07 3.56 7.89 -2.91 -0.02 3.54 16 19 C -0.05 -2.95 4.92 84.86 0.42 -2.53 16 20 N -0.93 -56.01 11.20 21.65 0.24 -55.77 16 21 Si 0.96 45.25 29.59 68.60 2.03 47.28 16 22 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 23 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 24 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 25 C 0.14 5.17 6.24 86.36 0.54 5.71 16 26 C -0.12 -3.59 4.96 30.67 0.15 -3.44 16 27 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.10 0.78 8.07 -2.39 -0.02 0.76 16 29 H 0.07 0.99 7.79 -2.39 -0.02 0.97 16 30 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.09 0.67 8.07 -2.39 -0.02 0.65 16 32 H 0.08 0.97 6.91 -2.38 -0.02 0.96 16 33 H 0.15 2.45 8.10 -2.39 -0.02 2.43 16 34 H 0.14 2.76 8.10 -2.39 -0.02 2.74 16 35 H 0.14 2.07 8.14 -2.39 -0.02 2.05 16 36 H 0.11 2.40 8.14 -2.39 -0.02 2.38 16 37 H 0.41 9.78 7.27 -92.71 -0.67 9.11 16 38 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.06 1.77 6.17 -2.39 -0.01 1.75 16 41 H 0.06 2.54 6.20 -2.39 -0.01 2.52 16 42 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 43 H 0.04 2.30 6.06 -2.39 -0.01 2.29 16 44 H 0.00 -0.23 7.74 -2.39 -0.02 -0.25 16 45 H 0.25 14.48 8.31 -92.70 -0.77 13.71 16 46 H 0.06 2.13 7.93 -2.39 -0.02 2.11 16 47 H 0.02 0.86 6.94 -2.39 -0.02 0.84 16 48 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 49 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 Total: -1.00 -78.87 392.51 -0.94 -79.81 By element: Atomic # 1 Polarization: 21.99 SS G_CDS: 0.27 Total: 22.26 kcal Atomic # 6 Polarization: -7.75 SS G_CDS: 6.96 Total: -0.79 kcal Atomic # 7 Polarization: -121.32 SS G_CDS: -5.56 Total: -126.89 kcal Atomic # 8 Polarization: -70.86 SS G_CDS: -4.33 Total: -75.20 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Atomic # 16 Polarization: 53.83 SS G_CDS: -0.30 Total: 53.53 kcal Total: -78.87 -0.94 -79.81 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724025107.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.528 kcal (2) G-P(sol) polarization free energy of solvation -78.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds