Wall clock time and date at job start Wed Apr 1 2020 04:45:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46501 * 119.99797 * 2 1 4 4 S 1.65604 * 120.00256 * 180.02562 * 2 1 3 5 5 O 1.42103 * 104.27732 * 206.07305 * 4 2 1 6 6 O 1.42096 * 104.27516 * 333.92642 * 4 2 1 7 7 C 1.81399 * 104.44921 * 89.99777 * 4 2 1 8 8 C 1.50700 * 109.46893 * 179.97438 * 7 4 2 9 9 O 1.21278 * 120.00279 * 0.02562 * 8 7 4 10 10 N 1.34778 * 119.99679 * 180.02562 * 8 7 4 11 11 C 1.46504 * 119.99548 * 180.02562 * 10 8 7 12 12 H 1.08993 * 109.46074 * 324.99935 * 11 10 8 13 13 C 1.53042 * 109.45889 * 84.97691 * 11 10 8 14 14 C 1.53192 * 109.30868 * 181.38205 * 13 11 10 15 15 N 1.46925 * 108.77986 * 305.35941 * 14 13 11 16 16 C 1.36934 * 120.63675 * 233.63099 * 15 14 13 17 17 H 1.08006 * 119.99360 * 27.67517 * 16 15 14 18 18 C 1.38803 * 120.00232 * 207.67392 * 16 15 14 19 19 N 1.31619 * 120.00434 * 17.36143 * 18 16 15 20 20 Si 1.86801 * 119.99997 * 197.36366 * 18 16 15 21 21 H 1.48498 * 109.47113 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47483 * 120.00074 * 20 18 16 23 23 H 1.48503 * 109.46911 * 239.99992 * 20 18 16 24 24 C 1.46931 * 118.73606 * 53.61019 * 15 14 13 25 25 C 1.53043 * 109.45682 * 205.02712 * 11 10 8 26 26 C 1.53000 * 109.50195 * 298.56740 * 25 11 10 27 27 C 1.53001 * 109.50009 * 58.66465 * 25 11 10 28 28 H 1.08998 * 109.47529 * 269.99838 * 1 2 3 29 29 H 1.09004 * 109.47329 * 30.00018 * 1 2 3 30 30 H 1.09009 * 109.46947 * 149.99732 * 1 2 3 31 31 H 1.09001 * 109.47285 * 269.99842 * 3 2 1 32 32 H 1.08998 * 109.46905 * 30.00209 * 3 2 1 33 33 H 1.09000 * 109.46714 * 150.00133 * 3 2 1 34 34 H 1.08996 * 109.47644 * 300.00275 * 7 4 2 35 35 H 1.09009 * 109.46925 * 60.00298 * 7 4 2 36 36 H 0.96998 * 120.00191 * 0.02562 * 10 8 7 37 37 H 1.08992 * 109.49737 * 301.33256 * 13 11 10 38 38 H 1.09004 * 109.49838 * 61.40254 * 13 11 10 39 39 H 1.08998 * 109.59019 * 65.15317 * 14 13 11 40 40 H 1.09008 * 109.58295 * 185.43249 * 14 13 11 41 41 H 0.96996 * 120.00290 * 180.02562 * 19 18 16 42 42 H 1.09006 * 109.58718 * 66.17581 * 24 15 14 43 43 H 1.08997 * 109.59041 * 186.60228 * 24 15 14 44 44 H 1.09002 * 109.47007 * 59.99866 * 26 25 11 45 45 H 1.08999 * 109.47867 * 180.02562 * 26 25 11 46 46 H 1.09011 * 109.47070 * 300.00456 * 26 25 11 47 47 H 1.08999 * 109.46745 * 59.99727 * 27 25 11 48 48 H 1.08994 * 109.47426 * 179.97438 * 27 25 11 49 49 H 1.09003 * 109.46559 * 300.00189 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 16 2.2930 -1.4341 -0.0006 5 8 3.5395 -1.1194 0.6048 6 8 1.3970 -2.3564 0.6042 7 6 2.5193 -1.8254 -1.7574 8 6 3.2705 -3.1250 -1.8899 9 8 3.6185 -3.7283 -0.8970 10 7 3.5556 -3.6171 -3.1118 11 6 4.2854 -4.8808 -3.2405 12 1 5.0132 -4.9637 -2.4335 13 6 3.3000 -6.0491 -3.1605 14 6 4.0704 -7.3694 -3.2608 15 7 4.8850 -7.3500 -4.4833 16 6 4.7919 -8.3628 -5.4001 17 1 3.8726 -8.9218 -5.4956 18 6 5.8786 -8.6711 -6.2067 19 7 7.0817 -8.2490 -5.8797 20 14 5.6339 -9.6850 -7.7563 21 1 4.1974 -10.0339 -7.8979 22 1 6.0713 -8.8979 -8.9372 23 1 6.4385 -10.9299 -7.6656 24 6 5.8014 -6.2227 -4.7038 25 6 5.0114 -4.9154 -4.5874 26 6 3.9877 -4.8344 -5.7216 27 6 5.9723 -3.7284 -4.6802 28 1 -0.3634 0.0000 1.0276 29 1 -0.3634 0.8900 -0.5138 30 1 -0.3633 -0.8900 -0.5139 31 1 2.3791 1.5834 -1.0277 32 1 1.6083 2.0283 0.5139 33 1 3.1498 1.1384 0.5138 34 1 1.5451 -1.9178 -2.2376 35 1 3.0866 -1.0277 -2.2372 36 1 3.2776 -3.1344 -3.9060 37 1 2.7664 -6.0105 -2.2109 38 1 2.5866 -5.9803 -3.9818 39 1 4.7184 -7.4813 -2.3916 40 1 3.3666 -8.2009 -3.3013 41 1 7.8410 -8.4642 -6.4435 42 1 6.5906 -6.2410 -3.9521 43 1 6.2398 -6.2974 -5.6989 44 1 3.4241 -3.9053 -5.6367 45 1 4.5051 -4.8595 -6.6807 46 1 3.3044 -5.6812 -5.6556 47 1 6.7020 -3.7878 -3.8727 48 1 6.4894 -3.7537 -5.6394 49 1 5.4102 -2.7984 -4.5944 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724969978.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:45:25 Heat of formation + Delta-G solvation = -78.466771 kcal Electronic energy + Delta-G solvation = -30392.692920 eV Core-core repulsion = 26290.054422 eV Total energy + Delta-G solvation = -4102.638498 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 2.14 seconds Orbital eigenvalues (eV) -40.25114 -38.30242 -37.34500 -36.61719 -36.01282 -34.73316 -33.04531 -32.14070 -30.80612 -29.09347 -28.52991 -26.83977 -25.97471 -25.15494 -24.91164 -22.51526 -20.71098 -20.55800 -19.24711 -18.47757 -18.05236 -17.26823 -16.79216 -16.68666 -16.48770 -15.65340 -15.46379 -14.90768 -14.75683 -14.63278 -14.21208 -13.93739 -13.76330 -13.44000 -13.35313 -13.30222 -13.09632 -12.97434 -12.71989 -12.64555 -12.33940 -12.22205 -11.91139 -11.84479 -11.71922 -11.56688 -11.38901 -11.36749 -11.10269 -10.93174 -10.73149 -10.64880 -10.36625 -10.22835 -10.13221 -10.00985 -9.72525 -9.56655 -9.45623 -8.85531 -8.49266 -6.70966 -5.82353 -3.23949 -0.13448 2.34735 2.36615 3.00702 3.34161 3.42866 3.44500 3.65920 3.85318 4.19295 4.43394 4.46544 4.49909 4.80307 4.87854 4.93950 5.10927 5.13179 5.22219 5.35252 5.35384 5.38002 5.48516 5.50386 5.51366 5.79765 5.86558 6.00324 6.01263 6.04253 6.12356 6.23346 6.34171 6.37187 6.43460 6.53623 6.64365 6.78215 6.82478 6.93171 6.98322 7.26836 7.37735 7.60086 7.77445 8.02370 8.41174 9.17650 9.80864 10.37705 11.26428 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.028259 B = 0.002473 C = 0.002431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.598421 B =11320.266902 C =11517.383260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -1.012 6.012 3 C 0.079 3.921 4 S 2.644 3.356 5 O -0.937 6.937 6 O -0.935 6.935 7 C -0.676 4.676 8 C 0.537 3.463 9 O -0.537 6.537 10 N -0.704 5.704 11 C 0.158 3.842 12 H 0.086 0.914 13 C -0.145 4.145 14 C 0.147 3.853 15 N -0.590 5.590 16 C -0.249 4.249 17 H 0.066 0.934 18 C 0.003 3.997 19 N -0.902 5.902 20 Si 0.900 3.100 21 H -0.278 1.278 22 H -0.289 1.289 23 H -0.291 1.291 24 C 0.186 3.814 25 C -0.098 4.098 26 C -0.128 4.128 27 C -0.135 4.135 28 H 0.062 0.938 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.055 0.945 32 H 0.077 0.923 33 H 0.086 0.914 34 H 0.156 0.844 35 H 0.157 0.843 36 H 0.400 0.600 37 H 0.056 0.944 38 H 0.065 0.935 39 H 0.021 0.979 40 H 0.057 0.943 41 H 0.253 0.747 42 H 0.021 0.979 43 H 0.095 0.905 44 H 0.028 0.972 45 H 0.053 0.947 46 H 0.071 0.929 47 H 0.052 0.948 48 H 0.057 0.943 49 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.160 21.523 5.315 25.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.852 5.852 3 C -0.066 4.066 4 S 2.731 3.269 5 O -0.927 6.927 6 O -0.925 6.925 7 C -0.804 4.804 8 C 0.320 3.680 9 O -0.416 6.416 10 N -0.354 5.354 11 C 0.055 3.945 12 H 0.105 0.895 13 C -0.185 4.185 14 C 0.020 3.980 15 N -0.312 5.312 16 C -0.379 4.379 17 H 0.084 0.916 18 C -0.196 4.196 19 N -0.546 5.546 20 Si 0.730 3.270 21 H -0.203 1.203 22 H -0.216 1.216 23 H -0.218 1.218 24 C 0.059 3.941 25 C -0.100 4.100 26 C -0.185 4.185 27 C -0.193 4.193 28 H 0.080 0.920 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.073 0.927 32 H 0.096 0.904 33 H 0.105 0.895 34 H 0.174 0.826 35 H 0.175 0.825 36 H 0.235 0.765 37 H 0.075 0.925 38 H 0.083 0.917 39 H 0.039 0.961 40 H 0.076 0.924 41 H 0.063 0.937 42 H 0.039 0.961 43 H 0.113 0.887 44 H 0.047 0.953 45 H 0.072 0.928 46 H 0.090 0.910 47 H 0.071 0.929 48 H 0.076 0.924 49 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -11.489 20.558 6.646 24.470 hybrid contribution -0.355 0.089 -2.120 2.151 sum -11.844 20.648 4.526 24.230 Atomic orbital electron populations 1.21519 0.78121 1.03015 1.02777 1.57597 1.15454 1.22152 1.89995 1.21656 0.97800 0.85098 1.02062 1.04351 0.73960 0.72527 0.76016 1.93576 1.44166 1.82826 1.72088 1.93593 1.64808 1.62140 1.71957 1.31175 1.10798 1.06091 1.32314 1.19097 0.79590 0.84361 0.84935 1.90860 1.53665 1.60528 1.36521 1.46249 1.57087 1.25138 1.06905 1.21198 0.93510 0.80986 0.98838 0.89546 1.22481 0.98549 0.96579 1.00935 1.20877 0.93597 0.93692 0.89856 1.44068 1.46710 1.21581 1.18795 1.19198 0.96048 1.10688 1.11965 0.91605 1.25020 0.94775 0.99184 1.00590 1.70032 0.97805 1.49306 1.37478 0.86264 0.77608 0.79635 0.83526 1.20291 1.21618 1.21751 1.20842 0.89522 0.81311 1.02403 1.21597 0.96374 0.99212 0.92837 1.21757 0.98824 0.99968 0.97928 1.21783 0.98985 0.96613 1.01961 0.91980 0.90866 0.90922 0.92659 0.90432 0.89504 0.82564 0.82541 0.76491 0.92483 0.91677 0.96067 0.92402 0.93654 0.96117 0.88737 0.95283 0.92775 0.90962 0.92858 0.92412 0.93945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.50 10.20 59.84 0.61 1.11 16 2 N -1.01 -7.58 3.52 -129.20 -0.45 -8.04 16 3 C 0.08 0.43 10.64 59.85 0.64 1.07 16 4 S 2.64 30.85 4.51 -107.50 -0.49 30.36 16 5 O -0.94 -14.06 16.57 -57.55 -0.95 -15.01 16 6 O -0.94 -14.14 17.09 -57.55 -0.98 -15.12 16 7 C -0.68 -6.00 6.66 36.01 0.24 -5.76 16 8 C 0.54 7.66 7.81 -10.98 -0.09 7.57 16 9 O -0.54 -10.08 15.53 5.56 0.09 -10.00 16 10 N -0.70 -9.46 4.29 -53.76 -0.23 -9.69 16 11 C 0.16 2.68 1.57 -67.88 -0.11 2.57 16 12 H 0.09 1.68 7.58 -51.93 -0.39 1.28 16 13 C -0.15 -2.60 5.31 -26.61 -0.14 -2.74 16 14 C 0.15 3.09 6.51 -3.71 -0.02 3.07 16 15 N -0.59 -14.12 2.43 -172.31 -0.42 -14.54 16 16 C -0.25 -6.58 9.59 -15.06 -0.14 -6.72 16 17 H 0.07 1.72 7.89 -52.48 -0.41 1.31 16 18 C 0.00 0.08 4.91 -17.43 -0.09 -0.01 16 19 N -0.90 -25.46 11.19 55.49 0.62 -24.83 16 20 Si 0.90 21.16 29.59 -169.99 -5.03 16.13 16 21 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 22 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 24 C 0.19 4.18 3.99 -3.71 -0.01 4.17 16 25 C -0.10 -1.69 0.56 -154.38 -0.09 -1.77 16 26 C -0.13 -2.04 7.83 37.16 0.29 -1.75 16 27 C -0.14 -2.03 8.31 37.16 0.31 -1.72 16 28 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.07 0.21 8.07 -51.93 -0.42 -0.21 16 30 H 0.07 0.36 7.79 -51.92 -0.40 -0.05 16 31 H 0.05 0.18 8.14 -51.93 -0.42 -0.24 16 32 H 0.08 0.28 8.07 -51.93 -0.42 -0.14 16 33 H 0.09 0.58 6.91 -51.93 -0.36 0.22 16 34 H 0.16 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.16 0.84 8.14 -51.92 -0.42 0.42 16 36 H 0.40 4.18 6.66 -40.82 -0.27 3.91 16 37 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.06 1.12 6.34 -51.93 -0.33 0.79 16 39 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.06 1.19 7.94 -51.92 -0.41 0.78 16 41 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 42 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.09 2.38 6.04 -51.93 -0.31 2.07 16 44 H 0.03 0.36 6.58 -51.93 -0.34 0.02 16 45 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 46 H 0.07 1.30 5.97 -51.92 -0.31 0.99 16 47 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 48 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 49 H 0.04 0.52 7.36 -51.93 -0.38 0.14 16 LS Contribution 392.84 15.07 5.92 5.92 Total: -1.00 -35.76 392.84 -8.66 -44.43 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -8.13 Total: 1.31 kcal Atomic # 6 Polarization: -2.31 SS G_CDS: 1.40 Total: -0.92 kcal Atomic # 7 Polarization: -56.62 SS G_CDS: -0.48 Total: -57.10 kcal Atomic # 8 Polarization: -38.28 SS G_CDS: -1.85 Total: -40.13 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.03 Total: 16.13 kcal Atomic # 16 Polarization: 30.85 SS G_CDS: -0.49 Total: 30.36 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -35.76 -8.66 -44.43 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724969978.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.040 kcal (2) G-P(sol) polarization free energy of solvation -35.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.14 seconds