Wall clock time and date at job start Wed Apr 1 2020 04:09:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42892 * 114.00166 * 2 1 4 4 C 1.50704 * 109.47147 * 179.97438 * 3 2 1 5 5 C 1.38374 * 119.93014 * 269.97663 * 4 3 2 6 6 C 1.38337 * 120.29563 * 180.02562 * 5 4 3 7 7 C 1.37979 * 120.14288 * 359.69978 * 6 5 4 8 8 C 1.39559 * 119.85145 * 0.57574 * 7 6 5 9 9 C 1.47850 * 120.14377 * 179.72069 * 8 7 6 10 10 O 1.21553 * 119.99637 * 179.72136 * 9 8 7 11 11 N 1.34771 * 119.99872 * 359.72487 * 9 8 7 12 12 C 1.46500 * 119.99795 * 179.97438 * 11 9 8 13 13 C 1.53514 * 114.17103 * 155.00033 * 12 11 9 14 14 N 1.47482 * 87.93039 * 87.62493 * 13 12 11 15 15 C 1.46901 * 110.99764 * 138.70591 * 14 13 12 16 16 C 1.50701 * 109.46921 * 169.99672 * 15 14 13 17 17 O 1.21294 * 119.99849 * 0.02562 * 16 15 14 18 18 N 1.34780 * 119.99795 * 179.97438 * 16 15 14 19 19 C 1.37101 * 119.99707 * 180.02562 * 18 16 15 20 20 H 1.08002 * 119.99704 * 359.97438 * 19 18 16 21 21 C 1.38941 * 119.99927 * 180.02562 * 19 18 16 22 22 N 1.31417 * 120.00180 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00273 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.46986 * 359.97438 * 23 21 19 25 25 H 1.48494 * 109.47457 * 119.99901 * 23 21 19 26 26 H 1.48501 * 109.47104 * 239.99973 * 23 21 19 27 27 C 1.47480 * 87.83699 * 27.01095 * 14 13 12 28 28 C 1.37939 * 119.92333 * 89.99890 * 4 3 2 29 29 H 1.09004 * 109.47536 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47552 * 300.00307 * 1 2 3 31 31 H 1.08999 * 109.46807 * 59.99945 * 1 2 3 32 32 H 1.09000 * 109.47526 * 59.99886 * 3 2 1 33 33 H 1.08997 * 109.47220 * 299.99399 * 3 2 1 34 34 H 1.08001 * 119.85295 * 0.02562 * 5 4 3 35 35 H 1.08003 * 119.92934 * 179.97438 * 6 5 4 36 36 H 1.07998 * 120.07943 * 180.27409 * 7 6 5 37 37 H 0.96999 * 120.00420 * 0.02562 * 11 9 8 38 38 H 1.09008 * 113.25803 * 22.05139 * 12 11 9 39 39 H 1.08994 * 113.47382 * 332.85336 * 13 12 11 40 40 H 1.09003 * 113.47448 * 202.39244 * 13 12 11 41 41 H 1.09002 * 109.47401 * 49.99700 * 15 14 13 42 42 H 1.09001 * 109.46874 * 289.99713 * 15 14 13 43 43 H 0.96995 * 120.00011 * 0.02562 * 18 16 15 44 44 H 0.97000 * 119.99884 * 180.02562 * 22 21 19 45 45 H 1.08999 * 113.47664 * 87.75895 * 27 14 13 46 46 H 1.08994 * 113.47488 * 218.22090 * 27 14 13 47 47 H 1.08002 * 120.07569 * 0.02562 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1863 0.0006 5 6 4.2003 1.1325 1.2001 6 6 5.5794 1.0238 1.2095 7 6 6.2777 0.9621 0.0211 8 6 5.5906 1.0217 -1.1922 9 6 6.3329 0.9623 -2.4695 10 8 5.7314 1.0093 -3.5247 11 7 7.6764 0.8560 -2.4638 12 6 8.4118 0.7966 -3.7294 13 6 9.8673 1.2752 -3.6337 14 7 10.2399 -0.1027 -3.2628 15 6 11.4836 -0.5095 -3.9304 16 6 11.9635 -1.8136 -3.3470 17 8 11.3312 -2.3514 -2.4625 18 7 13.0945 -2.3827 -3.8089 19 6 13.5308 -3.5694 -3.2785 20 1 12.9683 -4.0478 -2.4904 21 6 14.6971 -4.1558 -3.7542 22 7 15.3818 -3.5734 -4.7128 23 14 15.2911 -5.7730 -3.0322 24 1 14.3489 -6.2186 -1.9745 25 1 15.3551 -6.7995 -4.1032 26 1 16.6420 -5.5861 -2.4444 27 6 9.0597 -0.5652 -4.0167 28 6 4.1990 1.1317 -1.1946 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.6886 1.8464 0.8900 33 1 1.6887 1.8463 -0.8900 34 1 3.6581 1.1756 2.1332 35 1 6.1103 0.9827 2.1492 36 1 7.3539 0.8727 0.0296 37 1 8.1564 0.8180 -1.6217 38 1 7.8582 1.2168 -4.5691 39 1 10.0346 1.9998 -2.8368 40 1 10.2829 1.5952 -4.5892 41 1 12.2439 0.2571 -3.7807 42 1 11.2991 -0.6348 -4.9973 43 1 13.5999 -1.9528 -4.5164 44 1 16.1958 -3.9831 -5.0452 45 1 9.2598 -0.7364 -5.0744 46 1 8.5427 -1.4003 -3.5443 47 1 3.6611 1.1746 -2.1301 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753381170.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:09:23 Heat of formation + Delta-G solvation = -43.028044 kcal Electronic energy + Delta-G solvation = -28852.001274 eV Core-core repulsion = 24615.455564 eV Total energy + Delta-G solvation = -4236.545711 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.83661 -39.93965 -38.71689 -37.80724 -37.56140 -34.21368 -33.81397 -32.42031 -31.47601 -31.21554 -29.69501 -27.66896 -25.93379 -25.80342 -25.63219 -24.37790 -23.31678 -22.14425 -20.64040 -19.89736 -19.22325 -18.03469 -17.81793 -16.81872 -16.69371 -16.38510 -16.13037 -15.97475 -15.73369 -15.47254 -15.13371 -14.90485 -14.67293 -14.55732 -14.36317 -13.98208 -13.72121 -13.32202 -13.18416 -13.00261 -12.85868 -12.69430 -12.58081 -12.08294 -11.99277 -11.79818 -11.58865 -11.44641 -11.34792 -11.16375 -11.06195 -10.69128 -10.33519 -10.21125 -10.15677 -10.07272 -9.49879 -9.32905 -9.25453 -9.06650 -8.82070 -8.20342 -7.94705 -6.40565 -3.81219 0.55384 0.96373 2.60113 2.92545 3.17051 3.27463 3.34876 3.35494 3.77957 3.91396 4.00482 4.23720 4.36482 4.39281 4.44160 4.50981 4.73858 4.78634 4.84872 4.88743 4.91551 4.95487 5.01482 5.05410 5.20005 5.22271 5.27796 5.37218 5.38957 5.46993 5.58170 5.63533 5.66260 5.67571 5.71399 5.98807 6.02035 6.04622 6.14434 6.25998 6.41211 6.50363 6.53721 6.70177 7.10713 7.41128 7.56542 8.07226 8.07778 8.63508 9.19969 9.56129 10.08494 10.77390 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.016612 B = 0.001741 C = 0.001660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.153694 B =16082.396484 C =16867.288928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.385 6.385 3 C 0.103 3.897 4 C -0.105 4.105 5 C -0.073 4.073 6 C -0.128 4.128 7 C -0.075 4.075 8 C -0.135 4.135 9 C 0.562 3.438 10 O -0.540 6.540 11 N -0.695 5.695 12 C 0.116 3.884 13 C -0.014 4.014 14 N -0.441 5.441 15 C 0.008 3.992 16 C 0.447 3.553 17 O -0.575 6.575 18 N -0.567 5.567 19 C -0.297 4.297 20 H 0.103 0.897 21 C 0.021 3.979 22 N -0.903 5.903 23 Si 0.929 3.071 24 H -0.268 1.268 25 H -0.282 1.282 26 H -0.282 1.282 27 C -0.009 4.009 28 C -0.038 4.038 29 H 0.087 0.913 30 H 0.041 0.959 31 H 0.042 0.958 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.127 0.873 35 H 0.133 0.867 36 H 0.132 0.868 37 H 0.408 0.592 38 H 0.112 0.888 39 H 0.089 0.911 40 H 0.082 0.918 41 H 0.089 0.911 42 H 0.061 0.939 43 H 0.391 0.609 44 H 0.270 0.730 45 H 0.078 0.922 46 H 0.091 0.909 47 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.168 15.490 7.433 28.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.304 6.304 3 C 0.027 3.973 4 C -0.105 4.105 5 C -0.092 4.092 6 C -0.146 4.146 7 C -0.094 4.094 8 C -0.138 4.138 9 C 0.350 3.650 10 O -0.418 6.418 11 N -0.346 5.346 12 C 0.010 3.990 13 C -0.144 4.144 14 N -0.163 5.163 15 C -0.124 4.124 16 C 0.232 3.768 17 O -0.458 6.458 18 N -0.205 5.205 19 C -0.427 4.427 20 H 0.121 0.879 21 C -0.180 4.180 22 N -0.545 5.545 23 Si 0.756 3.244 24 H -0.192 1.192 25 H -0.208 1.208 26 H -0.208 1.208 27 C -0.139 4.139 28 C -0.057 4.057 29 H 0.106 0.894 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.145 0.855 35 H 0.151 0.849 36 H 0.150 0.850 37 H 0.245 0.755 38 H 0.130 0.870 39 H 0.108 0.892 40 H 0.100 0.900 41 H 0.107 0.893 42 H 0.079 0.921 43 H 0.224 0.776 44 H 0.080 0.920 45 H 0.096 0.904 46 H 0.109 0.891 47 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -23.587 14.720 7.885 28.900 hybrid contribution 0.986 -0.272 -0.631 1.202 sum -22.601 14.448 7.254 27.788 Atomic orbital electron populations 1.22777 0.80796 1.03048 1.00017 1.87997 1.19754 1.27223 1.95403 1.21331 0.89472 0.85322 1.01159 1.19516 0.94316 1.03393 0.93258 1.21255 0.94385 0.95976 0.97555 1.21123 0.94115 1.01054 0.98320 1.21459 1.00292 0.95856 0.91757 1.19905 0.94291 1.06643 0.92985 1.18233 0.81981 0.75985 0.88799 1.90763 1.68350 1.50265 1.32450 1.45419 1.06070 1.73648 1.09414 1.21995 0.91973 0.97465 0.87570 1.24300 0.93766 0.94613 1.01715 1.68829 1.00660 1.02883 1.43907 1.22509 0.94305 0.98598 0.97014 1.19666 0.83556 0.87002 0.86621 1.90524 1.57476 1.64948 1.32877 1.41879 1.21710 1.21671 1.35206 1.19745 1.06683 0.97842 1.18425 0.87924 1.25247 0.96361 0.99817 0.96574 1.69621 1.17268 1.40010 1.27563 0.85808 0.78564 0.81193 0.78834 1.19244 1.20782 1.20769 1.24380 0.92716 0.98605 0.98176 1.21134 0.92617 0.93633 0.98281 0.89405 0.94007 0.93896 0.92200 0.92110 0.85470 0.84930 0.85048 0.75496 0.87043 0.89237 0.90002 0.89327 0.92087 0.77571 0.91977 0.90383 0.89071 0.84556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.29 16 2 O -0.38 -3.63 10.69 -35.23 -0.38 -4.01 16 3 C 0.10 0.78 6.06 36.01 0.22 1.00 16 4 C -0.10 -0.96 5.50 -104.68 -0.58 -1.54 16 5 C -0.07 -0.59 9.69 -39.49 -0.38 -0.97 16 6 C -0.13 -1.03 10.03 -39.64 -0.40 -1.43 16 7 C -0.07 -0.70 9.54 -39.18 -0.37 -1.07 16 8 C -0.14 -1.53 5.87 -104.96 -0.62 -2.14 16 9 C 0.56 7.41 7.77 -12.33 -0.10 7.32 16 10 O -0.54 -8.70 15.94 5.32 0.08 -8.61 16 11 N -0.69 -8.29 5.34 -54.48 -0.29 -8.58 16 12 C 0.12 1.42 4.60 -67.72 -0.31 1.10 16 13 C -0.01 -0.16 7.45 -7.54 -0.06 -0.22 16 14 N -0.44 -6.98 5.82 -246.09 -1.43 -8.41 16 15 C 0.01 0.13 5.30 -4.97 -0.03 0.11 16 16 C 0.45 10.63 7.85 -10.98 -0.09 10.54 16 17 O -0.58 -15.89 16.01 5.55 0.09 -15.80 16 18 N -0.57 -14.46 5.29 -10.96 -0.06 -14.52 16 19 C -0.30 -8.37 9.68 -14.94 -0.14 -8.52 16 20 H 0.10 3.05 7.16 -52.49 -0.38 2.67 16 21 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 22 N -0.90 -24.67 13.05 55.50 0.72 -23.95 16 23 Si 0.93 21.23 29.55 -169.99 -5.02 16.21 16 24 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 25 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 26 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 27 C -0.01 -0.13 7.52 -7.54 -0.06 -0.18 16 28 C -0.04 -0.41 9.24 -39.18 -0.36 -0.77 16 29 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 31 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.06 0.33 8.08 -51.93 -0.42 -0.09 16 33 H 0.06 0.40 8.08 -51.93 -0.42 -0.02 16 34 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 35 H 0.13 0.77 8.06 -52.48 -0.42 0.35 16 36 H 0.13 1.03 6.40 -52.49 -0.34 0.70 16 37 H 0.41 4.38 6.80 -40.82 -0.28 4.10 16 38 H 0.11 1.33 7.45 -51.92 -0.39 0.94 16 39 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.08 0.79 7.91 -51.93 -0.41 0.38 16 41 H 0.09 1.37 8.08 -51.93 -0.42 0.95 16 42 H 0.06 0.94 7.30 -51.93 -0.38 0.56 16 43 H 0.39 9.49 7.90 -40.82 -0.32 9.17 16 44 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 45 H 0.08 1.05 7.42 -51.93 -0.39 0.67 16 46 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 47 H 0.14 1.50 7.65 -52.49 -0.40 1.10 16 LS Contribution 400.99 15.07 6.04 6.04 Total: -1.00 -35.51 400.99 -9.12 -44.63 By element: Atomic # 1 Polarization: 18.64 SS G_CDS: -6.63 Total: 12.01 kcal Atomic # 6 Polarization: 7.25 SS G_CDS: -2.25 Total: 4.99 kcal Atomic # 7 Polarization: -54.40 SS G_CDS: -1.06 Total: -55.46 kcal Atomic # 8 Polarization: -28.22 SS G_CDS: -0.20 Total: -28.42 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -35.51 -9.12 -44.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753381170.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.599 kcal (2) G-P(sol) polarization free energy of solvation -35.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds