Wall clock time and date at job start Wed Apr 1 2020 04:09:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42892 * 114.00166 * 2 1 4 4 C 1.50704 * 109.47147 * 179.97438 * 3 2 1 5 5 C 1.38374 * 119.93014 * 269.97663 * 4 3 2 6 6 C 1.38337 * 120.29563 * 180.02562 * 5 4 3 7 7 C 1.37979 * 120.14288 * 359.69978 * 6 5 4 8 8 C 1.39559 * 119.85145 * 0.57574 * 7 6 5 9 9 C 1.47850 * 120.14377 * 179.72069 * 8 7 6 10 10 O 1.21553 * 119.99637 * 179.72136 * 9 8 7 11 11 N 1.34771 * 119.99872 * 359.72487 * 9 8 7 12 12 C 1.46500 * 119.99795 * 179.97438 * 11 9 8 13 13 C 1.53514 * 114.17103 * 155.00033 * 12 11 9 14 14 N 1.47482 * 87.93039 * 87.62493 * 13 12 11 15 15 C 1.46901 * 110.99764 * 138.70591 * 14 13 12 16 16 C 1.50701 * 109.46921 * 169.99672 * 15 14 13 17 17 O 1.21294 * 119.99849 * 0.02562 * 16 15 14 18 18 N 1.34780 * 119.99795 * 179.97438 * 16 15 14 19 19 C 1.37101 * 119.99707 * 180.02562 * 18 16 15 20 20 H 1.08002 * 119.99704 * 359.97438 * 19 18 16 21 21 C 1.38941 * 119.99927 * 180.02562 * 19 18 16 22 22 N 1.31417 * 120.00180 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00273 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.46986 * 359.97438 * 23 21 19 25 25 H 1.48494 * 109.47457 * 119.99901 * 23 21 19 26 26 H 1.48501 * 109.47104 * 239.99973 * 23 21 19 27 27 C 1.47480 * 87.83699 * 27.01095 * 14 13 12 28 28 C 1.37939 * 119.92333 * 89.99890 * 4 3 2 29 29 H 1.09004 * 109.47536 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47552 * 300.00307 * 1 2 3 31 31 H 1.08999 * 109.46807 * 59.99945 * 1 2 3 32 32 H 1.09000 * 109.47526 * 59.99886 * 3 2 1 33 33 H 1.08997 * 109.47220 * 299.99399 * 3 2 1 34 34 H 1.08001 * 119.85295 * 0.02562 * 5 4 3 35 35 H 1.08003 * 119.92934 * 179.97438 * 6 5 4 36 36 H 1.07998 * 120.07943 * 180.27409 * 7 6 5 37 37 H 0.96999 * 120.00420 * 0.02562 * 11 9 8 38 38 H 1.09008 * 113.25803 * 22.05139 * 12 11 9 39 39 H 1.08994 * 113.47382 * 332.85336 * 13 12 11 40 40 H 1.09003 * 113.47448 * 202.39244 * 13 12 11 41 41 H 1.09002 * 109.47401 * 49.99700 * 15 14 13 42 42 H 1.09001 * 109.46874 * 289.99713 * 15 14 13 43 43 H 0.96995 * 120.00011 * 0.02562 * 18 16 15 44 44 H 0.97000 * 119.99884 * 180.02562 * 22 21 19 45 45 H 1.08999 * 113.47664 * 87.75895 * 27 14 13 46 46 H 1.08994 * 113.47488 * 218.22090 * 27 14 13 47 47 H 1.08002 * 120.07569 * 0.02562 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1863 0.0006 5 6 4.2003 1.1325 1.2001 6 6 5.5794 1.0238 1.2095 7 6 6.2777 0.9621 0.0211 8 6 5.5906 1.0217 -1.1922 9 6 6.3329 0.9623 -2.4695 10 8 5.7314 1.0093 -3.5247 11 7 7.6764 0.8560 -2.4638 12 6 8.4118 0.7966 -3.7294 13 6 9.8673 1.2752 -3.6337 14 7 10.2399 -0.1027 -3.2628 15 6 11.4836 -0.5095 -3.9304 16 6 11.9635 -1.8136 -3.3470 17 8 11.3312 -2.3514 -2.4625 18 7 13.0945 -2.3827 -3.8089 19 6 13.5308 -3.5694 -3.2785 20 1 12.9683 -4.0478 -2.4904 21 6 14.6971 -4.1558 -3.7542 22 7 15.3818 -3.5734 -4.7128 23 14 15.2911 -5.7730 -3.0322 24 1 14.3489 -6.2186 -1.9745 25 1 15.3551 -6.7995 -4.1032 26 1 16.6420 -5.5861 -2.4444 27 6 9.0597 -0.5652 -4.0167 28 6 4.1990 1.1317 -1.1946 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.6886 1.8464 0.8900 33 1 1.6887 1.8463 -0.8900 34 1 3.6581 1.1756 2.1332 35 1 6.1103 0.9827 2.1492 36 1 7.3539 0.8727 0.0296 37 1 8.1564 0.8180 -1.6217 38 1 7.8582 1.2168 -4.5691 39 1 10.0346 1.9998 -2.8368 40 1 10.2829 1.5952 -4.5892 41 1 12.2439 0.2571 -3.7807 42 1 11.2991 -0.6348 -4.9973 43 1 13.5999 -1.9528 -4.5164 44 1 16.1958 -3.9831 -5.0452 45 1 9.2598 -0.7364 -5.0744 46 1 8.5427 -1.4003 -3.5443 47 1 3.6611 1.1746 -2.1301 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753381170.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:09:22 Heat of formation + Delta-G solvation = -71.216263 kcal Electronic energy + Delta-G solvation = -28853.223607 eV Core-core repulsion = 24615.455564 eV Total energy + Delta-G solvation = -4237.768043 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.87822 -40.88309 -39.83385 -39.30037 -38.34545 -35.96003 -35.17627 -33.32548 -33.10521 -32.21711 -30.97615 -28.22593 -27.42349 -26.95856 -26.25294 -25.67556 -24.51568 -22.84258 -21.53463 -21.23208 -20.75157 -19.90147 -18.82332 -17.80766 -17.61509 -17.35745 -17.10938 -16.87370 -16.66818 -16.54589 -16.50014 -16.23347 -15.92419 -15.56228 -15.52411 -15.27015 -14.84113 -14.76800 -14.51987 -13.81920 -13.73512 -13.62368 -13.52438 -13.43443 -13.17260 -12.99914 -12.66869 -12.58981 -12.44854 -12.35875 -12.30290 -12.11656 -11.99541 -11.83827 -11.50462 -11.14318 -10.66694 -10.39229 -10.25592 -10.00425 -9.96011 -9.90979 -9.73809 -8.46976 -5.95425 -0.21315 0.25621 1.35707 1.40747 1.54792 1.72087 1.99035 2.06911 2.28416 2.64036 2.83964 3.15962 3.19396 3.33136 3.50784 3.61292 3.74939 3.77869 3.87564 4.07093 4.14999 4.21508 4.27730 4.30215 4.38211 4.40284 4.46680 4.52678 4.54256 4.56602 4.58780 4.65159 4.76155 4.80252 4.81761 4.87424 4.96095 5.25089 5.31505 5.36191 5.40642 5.43830 5.46555 5.84528 5.86333 6.06551 6.19318 6.44770 6.61273 7.08478 7.13708 7.57556 8.14372 8.70647 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.016612 B = 0.001741 C = 0.001660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.153694 B =16082.396484 C =16867.288928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.416 6.416 3 C 0.102 3.898 4 C -0.112 4.112 5 C -0.069 4.069 6 C -0.127 4.127 7 C -0.079 4.079 8 C -0.156 4.156 9 C 0.560 3.440 10 O -0.578 6.578 11 N -0.689 5.689 12 C 0.123 3.877 13 C 0.003 3.997 14 N -0.469 5.469 15 C 0.021 3.979 16 C 0.441 3.559 17 O -0.620 6.620 18 N -0.576 5.576 19 C -0.333 4.333 20 H 0.076 0.924 21 C -0.012 4.012 22 N -0.920 5.920 23 Si 0.991 3.009 24 H -0.275 1.275 25 H -0.271 1.271 26 H -0.269 1.269 27 C -0.014 4.014 28 C -0.054 4.054 29 H 0.091 0.909 30 H 0.059 0.941 31 H 0.049 0.951 32 H 0.085 0.915 33 H 0.065 0.935 34 H 0.155 0.845 35 H 0.160 0.840 36 H 0.143 0.857 37 H 0.414 0.586 38 H 0.117 0.883 39 H 0.106 0.894 40 H 0.110 0.890 41 H 0.114 0.886 42 H 0.085 0.915 43 H 0.396 0.604 44 H 0.277 0.723 45 H 0.091 0.909 46 H 0.057 0.943 47 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.080 16.722 8.395 29.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.336 6.336 3 C 0.026 3.974 4 C -0.112 4.112 5 C -0.087 4.087 6 C -0.144 4.144 7 C -0.097 4.097 8 C -0.159 4.159 9 C 0.350 3.650 10 O -0.459 6.459 11 N -0.340 5.340 12 C 0.017 3.983 13 C -0.126 4.126 14 N -0.192 5.192 15 C -0.111 4.111 16 C 0.229 3.771 17 O -0.506 6.506 18 N -0.214 5.214 19 C -0.463 4.463 20 H 0.094 0.906 21 C -0.212 4.212 22 N -0.561 5.561 23 Si 0.815 3.185 24 H -0.200 1.200 25 H -0.196 1.196 26 H -0.195 1.195 27 C -0.145 4.145 28 C -0.073 4.073 29 H 0.110 0.890 30 H 0.077 0.923 31 H 0.068 0.932 32 H 0.103 0.897 33 H 0.083 0.917 34 H 0.173 0.827 35 H 0.178 0.822 36 H 0.161 0.839 37 H 0.252 0.748 38 H 0.135 0.865 39 H 0.125 0.875 40 H 0.128 0.872 41 H 0.132 0.868 42 H 0.103 0.897 43 H 0.230 0.770 44 H 0.087 0.913 45 H 0.109 0.891 46 H 0.076 0.924 47 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -23.480 15.982 8.839 29.747 hybrid contribution 0.884 -0.646 -0.883 1.407 sum -22.596 15.337 7.956 28.445 Atomic orbital electron populations 1.22944 0.79215 1.03765 1.01205 1.87941 1.21632 1.28342 1.95663 1.21439 0.88388 0.85003 1.02591 1.19775 0.95429 1.02935 0.93052 1.21632 0.94619 0.94330 0.98150 1.21485 0.94362 0.99773 0.98827 1.21645 1.00979 0.95566 0.91538 1.19871 0.94518 1.08722 0.92824 1.18587 0.82222 0.75121 0.89107 1.90729 1.69054 1.52241 1.33856 1.45417 1.05834 1.72951 1.09760 1.21950 0.92724 0.95821 0.87827 1.24346 0.92172 0.92414 1.03702 1.68782 1.00026 1.05744 1.44634 1.22405 0.95646 0.95256 0.97761 1.20859 0.82230 0.88533 0.85520 1.90490 1.58499 1.66735 1.34844 1.41949 1.22560 1.21350 1.35552 1.19671 1.07752 0.99643 1.19190 0.90621 1.26000 0.95850 1.02707 0.96651 1.69673 1.17502 1.41109 1.27833 0.84895 0.78103 0.77363 0.78122 1.20005 1.19630 1.19455 1.24436 0.92801 0.98794 0.98457 1.21165 0.92687 0.94820 0.98673 0.89027 0.92279 0.93214 0.89730 0.91690 0.82717 0.82206 0.83925 0.74797 0.86503 0.87544 0.87200 0.86769 0.89702 0.76988 0.91331 0.89096 0.92391 0.85915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 11.01 113.37 1.25 1.51 16 2 O -0.42 -7.57 10.69 -148.98 -1.59 -9.16 16 3 C 0.10 1.43 6.06 71.24 0.43 1.86 16 4 C -0.11 -1.98 5.50 -19.90 -0.11 -2.09 16 5 C -0.07 -0.97 9.69 22.33 0.22 -0.76 16 6 C -0.13 -1.79 10.03 22.23 0.22 -1.56 16 7 C -0.08 -1.41 9.54 22.53 0.21 -1.19 16 8 C -0.16 -3.61 5.87 -20.09 -0.12 -3.73 16 9 C 0.56 15.23 7.77 86.79 0.67 15.91 16 10 O -0.58 -19.42 15.94 -3.88 -0.06 -19.49 16 11 N -0.69 -16.38 5.34 -444.55 -2.37 -18.75 16 12 C 0.12 2.89 4.60 45.45 0.21 3.10 16 13 C 0.00 0.05 7.45 83.58 0.62 0.67 16 14 N -0.47 -14.28 5.82 -932.48 -5.43 -19.71 16 15 C 0.02 0.69 5.30 85.56 0.45 1.14 16 16 C 0.44 21.18 7.85 87.66 0.69 21.87 16 17 O -0.62 -35.25 16.01 -3.07 -0.05 -35.30 16 18 N -0.58 -29.75 5.29 -306.98 -1.62 -31.37 16 19 C -0.33 -19.17 9.68 84.04 0.81 -18.36 16 20 H 0.08 4.69 7.16 -2.91 -0.02 4.67 16 21 C -0.01 -0.67 5.50 84.92 0.47 -0.20 16 22 N -0.92 -49.77 13.05 21.66 0.28 -49.49 16 23 Si 0.99 43.42 29.55 68.60 2.03 45.45 16 24 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 25 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 26 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 27 C -0.01 -0.42 7.52 83.58 0.63 0.21 16 28 C -0.05 -1.22 9.24 22.53 0.21 -1.01 16 29 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.08 0.74 8.08 -2.39 -0.02 0.72 16 33 H 0.06 0.82 8.08 -2.39 -0.02 0.80 16 34 H 0.16 1.29 8.06 -2.91 -0.02 1.26 16 35 H 0.16 1.35 8.06 -2.91 -0.02 1.32 16 36 H 0.14 2.11 6.40 -2.91 -0.02 2.09 16 37 H 0.41 8.70 6.80 -92.71 -0.63 8.07 16 38 H 0.12 2.68 7.45 -2.38 -0.02 2.66 16 39 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 40 H 0.11 1.67 7.91 -2.39 -0.02 1.65 16 41 H 0.11 3.20 8.08 -2.39 -0.02 3.18 16 42 H 0.09 2.41 7.30 -2.39 -0.02 2.40 16 43 H 0.40 19.25 7.90 -92.71 -0.73 18.52 16 44 H 0.28 14.00 8.31 -92.71 -0.77 13.23 16 45 H 0.09 2.37 7.42 -2.39 -0.02 2.36 16 46 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 47 H 0.12 2.97 7.65 -2.91 -0.02 2.95 16 Total: -1.00 -79.51 400.99 -2.29 -81.80 By element: Atomic # 1 Polarization: 38.99 SS G_CDS: -0.35 Total: 38.64 kcal Atomic # 6 Polarization: 10.50 SS G_CDS: 6.87 Total: 17.37 kcal Atomic # 7 Polarization: -110.17 SS G_CDS: -9.14 Total: -119.31 kcal Atomic # 8 Polarization: -62.24 SS G_CDS: -1.70 Total: -63.95 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Total: -79.51 -2.29 -81.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753381170.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.581 kcal (2) G-P(sol) polarization free energy of solvation -79.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds