Wall clock time and date at job start Wed Apr 1 2020 04:38:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86803 * 120.00229 * 2 1 4 4 H 1.48502 * 109.46889 * 269.99908 * 3 2 1 5 5 H 1.48491 * 109.46960 * 29.99955 * 3 2 1 6 6 H 1.48498 * 109.46974 * 150.00195 * 3 2 1 7 7 C 1.38812 * 119.99811 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99841 * 359.97438 * 7 2 1 9 9 N 1.36936 * 120.00118 * 180.02562 * 7 2 1 10 10 C 1.46500 * 120.00192 * 180.02562 * 9 7 2 11 11 C 1.52994 * 109.47352 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.47472 * 174.74239 * 11 10 9 13 13 H 1.08997 * 109.69822 * 301.58379 * 12 11 10 14 14 C 1.53626 * 109.66504 * 62.17160 * 12 11 10 15 15 C 1.53042 * 109.24059 * 174.55054 * 14 12 11 16 16 C 1.53041 * 109.54014 * 298.51625 * 15 14 12 17 17 C 1.53190 * 109.31349 * 61.36379 * 16 15 14 18 18 N 1.46922 * 109.58824 * 181.23015 * 12 11 10 19 19 C 1.34776 * 120.63188 * 6.61967 * 18 12 11 20 20 O 1.21280 * 119.99877 * 354.59416 * 19 18 12 21 21 C 1.50700 * 119.99852 * 174.58165 * 19 18 12 22 22 C 1.53006 * 109.46745 * 180.02562 * 21 19 18 23 23 C 1.53006 * 109.46782 * 180.02562 * 22 21 19 24 24 S 1.81395 * 109.46910 * 180.02562 * 23 22 21 25 25 N 1.65597 * 104.45086 * 180.02562 * 24 23 22 26 26 O 1.42097 * 110.54330 * 68.37687 * 24 23 22 27 27 O 1.42109 * 110.54456 * 291.62565 * 24 23 22 28 28 H 0.97005 * 119.99471 * 0.02562 * 1 2 3 29 29 H 0.96995 * 120.00389 * 359.97438 * 9 7 2 30 30 H 1.08998 * 109.47111 * 59.99389 * 10 9 7 31 31 H 1.09007 * 109.46821 * 299.99784 * 10 9 7 32 32 H 1.09001 * 109.47661 * 54.73876 * 11 10 9 33 33 H 1.09006 * 109.47123 * 294.73995 * 11 10 9 34 34 H 1.09001 * 109.62903 * 54.56115 * 14 12 11 35 35 H 1.08997 * 109.46083 * 294.44061 * 14 12 11 36 36 H 1.09002 * 109.45919 * 178.49038 * 15 14 12 37 37 H 1.09000 * 109.45868 * 58.53541 * 15 14 12 38 38 H 1.08999 * 109.49427 * 301.41087 * 16 15 14 39 39 H 1.08998 * 109.49509 * 181.32036 * 16 15 14 40 40 H 1.08997 * 109.58687 * 185.57776 * 17 16 15 41 41 H 1.09002 * 109.70196 * 65.22356 * 17 16 15 42 42 H 1.09003 * 109.47019 * 60.00918 * 21 19 18 43 43 H 1.09001 * 109.47497 * 300.00725 * 21 19 18 44 44 H 1.08994 * 109.46977 * 60.00278 * 22 21 19 45 45 H 1.09001 * 109.47108 * 299.99660 * 22 21 19 46 46 H 1.09003 * 109.46857 * 59.99959 * 23 22 21 47 47 H 1.08994 * 109.46974 * 299.99996 * 23 22 21 48 48 H 0.96997 * 120.00353 * 150.00267 * 25 24 23 49 49 H 0.96999 * 119.99772 * 329.72097 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6526 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4701 -2.1375 -0.0005 9 7 3.3796 -1.2022 0.0000 10 6 4.1121 -2.4710 -0.0011 11 6 5.6163 -2.1915 0.0004 12 6 6.3801 -3.5108 0.1314 13 1 6.0825 -4.0180 1.0492 14 6 6.0755 -4.4068 -1.0787 15 6 6.9462 -5.6634 -1.0076 16 6 8.4232 -5.2664 -1.0622 17 6 8.7544 -4.3800 0.1425 18 7 7.8243 -3.2427 0.1627 19 6 8.2870 -1.9780 0.2146 20 8 7.5148 -1.0461 0.1370 21 6 9.7640 -1.7218 0.3694 22 6 10.0194 -0.2136 0.4010 23 6 11.5191 0.0465 0.5575 24 16 11.8218 1.8346 0.5958 25 7 13.4633 1.9723 0.7657 26 8 11.2967 2.4039 1.7871 27 8 11.5517 2.4134 -0.6737 28 1 -0.4849 0.8401 -0.0004 29 1 3.8647 -0.3623 0.0004 30 1 3.8490 -3.0416 -0.8918 31 1 3.8484 -3.0435 0.8882 32 1 5.8646 -1.5430 0.8406 33 1 5.8957 -1.7010 -0.9321 34 1 6.2928 -3.8652 -1.9993 35 1 5.0235 -4.6918 -1.0640 36 1 6.7137 -6.3144 -1.8504 37 1 6.7463 -6.1914 -0.0752 38 1 8.6184 -4.7168 -1.9830 39 1 9.0421 -6.1633 -1.0351 40 1 9.7774 -4.0138 0.0565 41 1 8.6484 -4.9552 1.0623 42 1 10.2994 -2.1638 -0.4710 43 1 10.1149 -2.1691 1.2994 44 1 9.4841 0.2280 1.2415 45 1 9.6686 0.2339 -0.5289 46 1 12.0541 -0.3951 -0.2833 47 1 11.8704 -0.4011 1.4871 48 1 13.9268 2.7392 0.3944 49 1 13.9608 1.2880 1.2402 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753786350.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:09 Heat of formation + Delta-G solvation = -94.632507 kcal Electronic energy + Delta-G solvation = -29188.806097 eV Core-core repulsion = 25085.466601 eV Total energy + Delta-G solvation = -4103.339497 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.72106 -37.72513 -37.36354 -36.26930 -35.59676 -34.91336 -33.64726 -33.10360 -32.77409 -30.92340 -28.96299 -28.09910 -25.15851 -24.16472 -23.15515 -21.80488 -21.05441 -20.69200 -19.82700 -19.13686 -18.04545 -17.68761 -17.53045 -16.89354 -16.50296 -16.29602 -15.91987 -15.56978 -14.97797 -14.71867 -14.64568 -14.28916 -13.98632 -13.83037 -13.58561 -13.36855 -13.06619 -12.94265 -12.64851 -12.54767 -12.52842 -12.42057 -12.34107 -12.29607 -12.20558 -11.60510 -11.42473 -11.36137 -11.23419 -11.15328 -11.05916 -10.84419 -10.81136 -10.79326 -10.43817 -10.31751 -10.01153 -9.47279 -8.92300 -8.76300 -8.57001 -7.07795 -5.65372 -2.99120 -0.18011 2.45565 2.53267 2.79611 3.29752 3.51824 3.58015 3.59547 3.81350 3.92580 4.37197 4.40290 4.42018 4.54926 4.61317 4.73127 4.75105 4.79274 4.91339 4.95584 5.02123 5.09755 5.19073 5.25503 5.43942 5.47116 5.48402 5.52627 5.63200 5.65191 5.67432 5.72040 5.84502 5.91442 6.01329 6.12266 6.16172 6.30022 6.43948 6.55620 6.59116 6.98249 7.06342 7.32308 8.12187 8.13827 8.54807 9.35502 10.08865 10.30260 11.53228 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.007838 B = 0.003094 C = 0.002276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3571.641441 B = 9047.042197 C =12300.543456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C 0.002 3.998 3 Si 0.883 3.117 4 H -0.284 1.284 5 H -0.292 1.292 6 H -0.274 1.274 7 C -0.240 4.240 8 H 0.088 0.912 9 N -0.755 5.755 10 C 0.151 3.849 11 C -0.118 4.118 12 C 0.152 3.848 13 H 0.073 0.927 14 C -0.134 4.134 15 C -0.121 4.121 16 C -0.135 4.135 17 C 0.107 3.893 18 N -0.611 5.611 19 C 0.506 3.494 20 O -0.516 6.516 21 C -0.132 4.132 22 C -0.101 4.101 23 C -0.623 4.623 24 S 2.615 3.385 25 N -1.253 6.253 26 O -0.956 6.956 27 O -0.959 6.959 28 H 0.258 0.742 29 H 0.363 0.637 30 H 0.023 0.977 31 H 0.020 0.980 32 H 0.086 0.914 33 H 0.072 0.928 34 H 0.067 0.933 35 H 0.083 0.917 36 H 0.065 0.935 37 H 0.064 0.936 38 H 0.066 0.934 39 H 0.073 0.927 40 H 0.082 0.918 41 H 0.069 0.931 42 H 0.095 0.905 43 H 0.095 0.905 44 H 0.091 0.909 45 H 0.091 0.909 46 H 0.136 0.864 47 H 0.134 0.866 48 H 0.420 0.580 49 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 34.722 -10.464 0.797 36.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.193 4.193 3 Si 0.714 3.286 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.200 1.200 7 C -0.370 4.370 8 H 0.106 0.894 9 N -0.400 5.400 10 C 0.024 3.976 11 C -0.156 4.156 12 C 0.049 3.951 13 H 0.091 0.909 14 C -0.172 4.172 15 C -0.158 4.158 16 C -0.173 4.173 17 C -0.016 4.016 18 N -0.345 5.345 19 C 0.293 3.707 20 O -0.392 6.392 21 C -0.174 4.174 22 C -0.140 4.140 23 C -0.753 4.753 24 S 2.706 3.294 25 N -0.925 5.925 26 O -0.945 6.945 27 O -0.948 6.948 28 H 0.068 0.932 29 H 0.196 0.804 30 H 0.041 0.959 31 H 0.037 0.963 32 H 0.105 0.895 33 H 0.091 0.909 34 H 0.086 0.914 35 H 0.101 0.899 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.085 0.915 39 H 0.091 0.909 40 H 0.100 0.900 41 H 0.087 0.913 42 H 0.113 0.887 43 H 0.114 0.886 44 H 0.110 0.890 45 H 0.109 0.891 46 H 0.155 0.845 47 H 0.152 0.848 48 H 0.250 0.750 49 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 33.251 -9.308 0.671 34.535 hybrid contribution 1.345 0.280 0.060 1.375 sum 34.596 -9.029 0.732 35.762 Atomic orbital electron populations 1.69714 1.05102 1.25725 1.58089 1.24658 0.95251 0.97246 1.02191 0.86543 0.79408 0.84776 0.77920 1.21084 1.21804 1.20005 1.19076 0.80786 0.94636 1.42530 0.89370 1.42705 1.03901 1.02490 1.90949 1.20775 0.89714 0.89259 0.97895 1.22295 0.94020 0.94553 1.04697 1.21425 0.78256 0.97402 0.97991 0.90877 1.22139 1.00770 0.95716 0.98581 1.21536 0.94276 0.97773 1.02237 1.21918 0.97508 0.99469 0.98434 1.21735 0.93103 0.87929 0.98836 1.48195 1.07285 1.05411 1.73640 1.20576 0.90550 0.82705 0.76819 1.90876 1.56905 1.43132 1.48246 1.21680 0.94357 0.96985 1.04337 1.21088 0.89883 0.97283 1.05751 1.30499 1.06456 1.26659 1.11688 1.04776 0.72869 0.77013 0.74729 1.53281 1.29298 1.35922 1.74018 1.93647 1.77791 1.74134 1.48977 1.93630 1.83251 1.74891 1.43041 0.93193 0.80429 0.95903 0.96260 0.89525 0.90948 0.91408 0.89877 0.91653 0.91761 0.91479 0.90881 0.89981 0.91285 0.88682 0.88633 0.89031 0.89063 0.84547 0.84794 0.75042 0.76269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -30.90 13.97 55.49 0.78 -30.12 16 2 C 0.00 0.06 5.50 -17.43 -0.10 -0.04 16 3 Si 0.88 24.02 27.74 -169.99 -4.71 19.30 16 4 H -0.28 -7.67 7.11 56.52 0.40 -7.26 16 5 H -0.29 -7.91 7.11 56.52 0.40 -7.51 16 6 H -0.27 -7.23 6.52 56.52 0.37 -6.87 16 7 C -0.24 -7.29 10.47 -15.06 -0.16 -7.45 16 8 H 0.09 2.81 8.06 -52.48 -0.42 2.39 16 9 N -0.76 -19.86 5.41 -59.91 -0.32 -20.18 16 10 C 0.15 3.18 5.82 -4.04 -0.02 3.15 16 11 C -0.12 -2.08 3.24 -26.73 -0.09 -2.17 16 12 C 0.15 1.97 3.01 -67.37 -0.20 1.77 16 13 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 14 C -0.13 -1.52 4.94 -26.38 -0.13 -1.65 16 15 C -0.12 -0.98 5.88 -26.69 -0.16 -1.14 16 16 C -0.14 -0.87 6.08 -26.61 -0.16 -1.03 16 17 C 0.11 0.69 6.32 -3.71 -0.02 0.67 16 18 N -0.61 -6.48 2.97 -164.97 -0.49 -6.97 16 19 C 0.51 6.05 7.61 -10.99 -0.08 5.97 16 20 O -0.52 -8.61 11.39 5.56 0.06 -8.55 16 21 C -0.13 -0.94 4.10 -27.88 -0.11 -1.05 16 22 C -0.10 -0.83 4.51 -26.72 -0.12 -0.95 16 23 C -0.62 -2.54 6.18 37.16 0.23 -2.31 16 24 S 2.62 18.88 5.97 -107.50 -0.64 18.24 16 25 N -1.25 -4.08 9.36 60.35 0.57 -3.52 16 26 O -0.96 -11.35 18.10 -57.54 -1.04 -12.39 16 27 O -0.96 -11.12 18.10 -57.54 -1.04 -12.16 16 28 H 0.26 8.09 8.31 -40.82 -0.34 7.75 16 29 H 0.36 9.60 5.53 -40.82 -0.23 9.37 16 30 H 0.02 0.48 6.91 -51.93 -0.36 0.12 16 31 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.09 1.71 6.35 -51.93 -0.33 1.38 16 33 H 0.07 1.39 7.12 -51.93 -0.37 1.02 16 34 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.08 1.01 6.93 -51.93 -0.36 0.65 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.08 0.33 5.96 -51.93 -0.31 0.02 16 41 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.09 0.44 7.48 -51.93 -0.39 0.05 16 43 H 0.10 0.45 8.11 -51.93 -0.42 0.03 16 44 H 0.09 0.88 8.10 -51.93 -0.42 0.46 16 45 H 0.09 0.88 8.10 -51.93 -0.42 0.45 16 46 H 0.14 0.21 8.14 -51.92 -0.42 -0.21 16 47 H 0.13 0.17 8.14 -51.93 -0.42 -0.26 16 48 H 0.42 1.17 8.96 -34.47 -0.31 0.86 16 49 H 0.41 0.05 8.96 -34.47 -0.31 -0.26 16 LS Contribution 393.71 15.07 5.93 5.93 Total: -1.00 -43.39 393.71 -10.09 -53.48 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: -8.04 Total: 3.18 kcal Atomic # 6 Polarization: -5.10 SS G_CDS: -1.13 Total: -6.23 kcal Atomic # 7 Polarization: -61.32 SS G_CDS: 0.53 Total: -60.79 kcal Atomic # 8 Polarization: -31.08 SS G_CDS: -2.02 Total: -33.10 kcal Atomic # 14 Polarization: 24.02 SS G_CDS: -4.71 Total: 19.30 kcal Atomic # 16 Polarization: 18.88 SS G_CDS: -0.64 Total: 18.24 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -43.39 -10.09 -53.48 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753786350.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.156 kcal (2) G-P(sol) polarization free energy of solvation -43.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds