Wall clock time and date at job start Wed Apr 1 2020 04:38:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86803 * 120.00229 * 2 1 4 4 H 1.48502 * 109.46889 * 269.99908 * 3 2 1 5 5 H 1.48491 * 109.46960 * 29.99955 * 3 2 1 6 6 H 1.48498 * 109.46974 * 150.00195 * 3 2 1 7 7 C 1.38812 * 119.99811 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99841 * 359.97438 * 7 2 1 9 9 N 1.36936 * 120.00118 * 180.02562 * 7 2 1 10 10 C 1.46500 * 120.00192 * 180.02562 * 9 7 2 11 11 C 1.52994 * 109.47352 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.47472 * 174.74239 * 11 10 9 13 13 H 1.08997 * 109.69822 * 301.58379 * 12 11 10 14 14 C 1.53626 * 109.66504 * 62.17160 * 12 11 10 15 15 C 1.53042 * 109.24059 * 174.55054 * 14 12 11 16 16 C 1.53041 * 109.54014 * 298.51625 * 15 14 12 17 17 C 1.53190 * 109.31349 * 61.36379 * 16 15 14 18 18 N 1.46922 * 109.58824 * 181.23015 * 12 11 10 19 19 C 1.34776 * 120.63188 * 6.61967 * 18 12 11 20 20 O 1.21280 * 119.99877 * 354.59416 * 19 18 12 21 21 C 1.50700 * 119.99852 * 174.58165 * 19 18 12 22 22 C 1.53006 * 109.46745 * 180.02562 * 21 19 18 23 23 C 1.53006 * 109.46782 * 180.02562 * 22 21 19 24 24 S 1.81395 * 109.46910 * 180.02562 * 23 22 21 25 25 N 1.65597 * 104.45086 * 180.02562 * 24 23 22 26 26 O 1.42097 * 110.54330 * 68.37687 * 24 23 22 27 27 O 1.42109 * 110.54456 * 291.62565 * 24 23 22 28 28 H 0.97005 * 119.99471 * 0.02562 * 1 2 3 29 29 H 0.96995 * 120.00389 * 359.97438 * 9 7 2 30 30 H 1.08998 * 109.47111 * 59.99389 * 10 9 7 31 31 H 1.09007 * 109.46821 * 299.99784 * 10 9 7 32 32 H 1.09001 * 109.47661 * 54.73876 * 11 10 9 33 33 H 1.09006 * 109.47123 * 294.73995 * 11 10 9 34 34 H 1.09001 * 109.62903 * 54.56115 * 14 12 11 35 35 H 1.08997 * 109.46083 * 294.44061 * 14 12 11 36 36 H 1.09002 * 109.45919 * 178.49038 * 15 14 12 37 37 H 1.09000 * 109.45868 * 58.53541 * 15 14 12 38 38 H 1.08999 * 109.49427 * 301.41087 * 16 15 14 39 39 H 1.08998 * 109.49509 * 181.32036 * 16 15 14 40 40 H 1.08997 * 109.58687 * 185.57776 * 17 16 15 41 41 H 1.09002 * 109.70196 * 65.22356 * 17 16 15 42 42 H 1.09003 * 109.47019 * 60.00918 * 21 19 18 43 43 H 1.09001 * 109.47497 * 300.00725 * 21 19 18 44 44 H 1.08994 * 109.46977 * 60.00278 * 22 21 19 45 45 H 1.09001 * 109.47108 * 299.99660 * 22 21 19 46 46 H 1.09003 * 109.46857 * 59.99959 * 23 22 21 47 47 H 1.08994 * 109.46974 * 299.99996 * 23 22 21 48 48 H 0.96997 * 120.00353 * 150.00267 * 25 24 23 49 49 H 0.96999 * 119.99772 * 329.72097 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6526 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4701 -2.1375 -0.0005 9 7 3.3796 -1.2022 0.0000 10 6 4.1121 -2.4710 -0.0011 11 6 5.6163 -2.1915 0.0004 12 6 6.3801 -3.5108 0.1314 13 1 6.0825 -4.0180 1.0492 14 6 6.0755 -4.4068 -1.0787 15 6 6.9462 -5.6634 -1.0076 16 6 8.4232 -5.2664 -1.0622 17 6 8.7544 -4.3800 0.1425 18 7 7.8243 -3.2427 0.1627 19 6 8.2870 -1.9780 0.2146 20 8 7.5148 -1.0461 0.1370 21 6 9.7640 -1.7218 0.3694 22 6 10.0194 -0.2136 0.4010 23 6 11.5191 0.0465 0.5575 24 16 11.8218 1.8346 0.5958 25 7 13.4633 1.9723 0.7657 26 8 11.2967 2.4039 1.7871 27 8 11.5517 2.4134 -0.6737 28 1 -0.4849 0.8401 -0.0004 29 1 3.8647 -0.3623 0.0004 30 1 3.8490 -3.0416 -0.8918 31 1 3.8484 -3.0435 0.8882 32 1 5.8646 -1.5430 0.8406 33 1 5.8957 -1.7010 -0.9321 34 1 6.2928 -3.8652 -1.9993 35 1 5.0235 -4.6918 -1.0640 36 1 6.7137 -6.3144 -1.8504 37 1 6.7463 -6.1914 -0.0752 38 1 8.6184 -4.7168 -1.9830 39 1 9.0421 -6.1633 -1.0351 40 1 9.7774 -4.0138 0.0565 41 1 8.6484 -4.9552 1.0623 42 1 10.2994 -2.1638 -0.4710 43 1 10.1149 -2.1691 1.2994 44 1 9.4841 0.2280 1.2415 45 1 9.6686 0.2339 -0.5289 46 1 12.0541 -0.3951 -0.2833 47 1 11.8704 -0.4011 1.4871 48 1 13.9268 2.7392 0.3944 49 1 13.9608 1.2880 1.2402 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753786350.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:08 Heat of formation + Delta-G solvation = -131.903385 kcal Electronic energy + Delta-G solvation = -29190.422284 eV Core-core repulsion = 25085.466601 eV Total energy + Delta-G solvation = -4104.955683 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.60674 -38.59334 -38.07753 -37.17507 -36.97737 -35.81279 -34.46837 -33.99207 -33.81179 -32.81493 -29.57027 -29.45132 -26.31409 -25.26045 -24.26938 -23.18298 -22.19477 -21.65901 -20.36669 -19.91206 -19.73376 -18.51196 -18.18577 -17.65726 -17.19861 -17.14518 -16.81143 -16.49859 -16.23147 -15.89840 -15.62023 -15.44163 -15.28216 -14.87418 -14.69083 -14.57875 -14.26102 -14.01222 -13.77542 -13.52408 -13.25525 -13.15978 -13.14314 -13.07854 -13.03817 -12.96641 -12.82493 -12.71013 -12.29118 -12.15161 -11.96597 -11.89174 -11.86246 -11.82044 -11.69290 -11.50131 -11.38153 -11.15981 -11.01141 -10.01773 -9.48089 -9.33774 -8.09123 -5.41223 -0.69839 1.33306 1.33454 1.42751 1.69957 1.96057 2.07639 2.42163 2.79220 3.22171 3.33419 3.42293 3.55813 3.82608 3.83725 3.88431 3.90618 4.00171 4.12892 4.16784 4.27187 4.38128 4.40929 4.47960 4.52801 4.59977 4.65306 4.73155 4.76685 4.82222 4.91469 4.93767 4.99828 5.09178 5.13464 5.18999 5.24897 5.31334 5.37593 5.40285 5.51477 5.68746 5.72389 6.16572 6.42671 6.52814 7.01616 7.29307 7.79968 7.98724 9.12446 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.007838 B = 0.003094 C = 0.002276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3571.641441 B = 9047.042197 C =12300.543456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.980 5.980 2 C -0.059 4.059 3 Si 0.950 3.050 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.235 4.235 8 H 0.062 0.938 9 N -0.762 5.762 10 C 0.148 3.852 11 C -0.096 4.096 12 C 0.155 3.845 13 H 0.080 0.920 14 C -0.131 4.131 15 C -0.118 4.118 16 C -0.131 4.131 17 C 0.100 3.900 18 N -0.609 5.609 19 C 0.491 3.509 20 O -0.578 6.578 21 C -0.121 4.121 22 C -0.115 4.115 23 C -0.591 4.591 24 S 2.614 3.386 25 N -1.235 6.235 26 O -1.015 7.015 27 O -1.013 7.013 28 H 0.260 0.740 29 H 0.362 0.638 30 H 0.027 0.973 31 H 0.022 0.978 32 H 0.064 0.936 33 H 0.051 0.949 34 H 0.052 0.948 35 H 0.067 0.933 36 H 0.071 0.929 37 H 0.073 0.927 38 H 0.059 0.941 39 H 0.104 0.896 40 H 0.119 0.881 41 H 0.085 0.915 42 H 0.133 0.867 43 H 0.134 0.866 44 H 0.065 0.935 45 H 0.065 0.935 46 H 0.177 0.823 47 H 0.177 0.823 48 H 0.424 0.576 49 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 39.392 -13.021 1.148 41.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.630 5.630 2 C -0.251 4.251 3 Si 0.777 3.223 4 H -0.204 1.204 5 H -0.213 1.213 6 H -0.191 1.191 7 C -0.366 4.366 8 H 0.080 0.920 9 N -0.408 5.408 10 C 0.022 3.978 11 C -0.134 4.134 12 C 0.051 3.949 13 H 0.098 0.902 14 C -0.169 4.169 15 C -0.155 4.155 16 C -0.169 4.169 17 C -0.021 4.021 18 N -0.342 5.342 19 C 0.281 3.719 20 O -0.458 6.458 21 C -0.162 4.162 22 C -0.155 4.155 23 C -0.724 4.724 24 S 2.710 3.290 25 N -0.912 5.912 26 O -1.004 7.004 27 O -1.002 7.002 28 H 0.068 0.932 29 H 0.194 0.806 30 H 0.045 0.955 31 H 0.040 0.960 32 H 0.083 0.917 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.085 0.915 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.078 0.922 39 H 0.122 0.878 40 H 0.137 0.863 41 H 0.103 0.897 42 H 0.151 0.849 43 H 0.152 0.848 44 H 0.084 0.916 45 H 0.084 0.916 46 H 0.195 0.805 47 H 0.195 0.805 48 H 0.254 0.746 49 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges 38.005 -11.896 1.032 39.836 hybrid contribution -0.115 0.901 -0.059 0.910 sum 37.889 -10.995 0.973 39.465 Atomic orbital electron populations 1.69860 1.06726 1.26692 1.59761 1.25409 0.96126 1.00824 1.02709 0.85487 0.78310 0.80303 0.78170 1.20441 1.21288 1.19117 1.19098 0.82549 0.93694 1.41247 0.92019 1.42827 1.02709 1.04359 1.90856 1.20996 0.91794 0.87155 0.97891 1.22013 0.91900 0.96841 1.02672 1.21192 0.80001 0.94672 0.99005 0.90239 1.22076 1.00819 0.97045 0.97001 1.21533 0.95119 0.95835 1.03023 1.21925 0.96238 1.00638 0.98120 1.22145 0.93761 0.86605 0.99597 1.48321 1.06544 1.06594 1.72722 1.21596 0.92597 0.82199 0.75520 1.90853 1.58946 1.44947 1.51098 1.21747 0.90588 0.96069 1.07759 1.21119 0.92352 0.98369 1.03616 1.30213 1.04011 1.22284 1.15848 1.04340 0.73338 0.78643 0.72729 1.52790 1.27659 1.36736 1.74046 1.93583 1.79349 1.76887 1.50605 1.93562 1.84410 1.77448 1.44816 0.93156 0.80565 0.95530 0.95970 0.91707 0.93009 0.92958 0.91477 0.91024 0.90859 0.92169 0.87807 0.86295 0.89660 0.84875 0.84847 0.91587 0.91571 0.80503 0.80494 0.74550 0.74104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -66.22 13.97 21.65 0.30 -65.92 16 2 C -0.06 -3.76 5.50 84.86 0.47 -3.29 16 3 Si 0.95 50.90 27.74 68.60 1.90 52.80 16 4 H -0.28 -14.57 7.11 99.48 0.71 -13.86 16 5 H -0.29 -15.06 7.11 99.48 0.71 -14.36 16 6 H -0.27 -13.74 6.52 99.48 0.65 -13.09 16 7 C -0.24 -14.70 10.47 84.03 0.88 -13.82 16 8 H 0.06 4.11 8.06 -2.91 -0.02 4.09 16 9 N -0.76 -41.22 5.41 -343.45 -1.86 -43.07 16 10 C 0.15 6.42 5.82 86.38 0.50 6.92 16 11 C -0.10 -3.52 3.24 30.59 0.10 -3.42 16 12 C 0.16 3.92 3.01 45.12 0.14 4.06 16 13 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 14 C -0.13 -2.90 4.94 30.82 0.15 -2.74 16 15 C -0.12 -1.58 5.88 30.62 0.18 -1.40 16 16 C -0.13 -1.09 6.08 30.67 0.19 -0.90 16 17 C 0.10 0.78 6.32 86.36 0.55 1.33 16 18 N -0.61 -11.40 2.97 -794.22 -2.36 -13.76 16 19 C 0.49 10.93 7.61 87.66 0.67 11.60 16 20 O -0.58 -19.90 11.39 -3.03 -0.03 -19.94 16 21 C -0.12 -1.19 4.10 29.85 0.12 -1.07 16 22 C -0.11 -1.67 4.51 30.60 0.14 -1.53 16 23 C -0.59 -2.44 6.18 71.98 0.44 -1.99 16 24 S 2.61 36.00 5.97 -56.49 -0.34 35.66 16 25 N -1.24 -5.55 9.36 37.02 0.35 -5.21 16 26 O -1.02 -24.85 18.10 -127.65 -2.31 -27.16 16 27 O -1.01 -24.21 18.10 -127.65 -2.31 -26.52 16 28 H 0.26 16.63 8.31 -92.70 -0.77 15.85 16 29 H 0.36 19.56 5.53 -92.71 -0.51 19.05 16 30 H 0.03 1.14 6.91 -2.39 -0.02 1.12 16 31 H 0.02 0.96 8.14 -2.38 -0.02 0.94 16 32 H 0.06 2.68 6.35 -2.39 -0.02 2.66 16 33 H 0.05 2.09 7.12 -2.38 -0.02 2.07 16 34 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.07 1.66 6.93 -2.39 -0.02 1.64 16 36 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 39 H 0.10 0.32 8.14 -2.39 -0.02 0.30 16 40 H 0.12 0.10 5.96 -2.39 -0.01 0.09 16 41 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 42 H 0.13 0.35 7.48 -2.39 -0.02 0.33 16 43 H 0.13 0.38 8.11 -2.39 -0.02 0.36 16 44 H 0.07 1.29 8.10 -2.39 -0.02 1.27 16 45 H 0.07 1.29 8.10 -2.39 -0.02 1.27 16 46 H 0.18 -0.56 8.14 -2.39 -0.02 -0.58 16 47 H 0.18 -0.67 8.14 -2.39 -0.02 -0.69 16 48 H 0.42 1.77 8.96 -96.75 -0.87 0.90 16 49 H 0.43 -1.35 8.96 -96.75 -0.87 -2.21 16 Total: -1.00 -102.79 393.71 -3.46 -106.25 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: -1.33 Total: 13.13 kcal Atomic # 6 Polarization: -10.79 SS G_CDS: 4.52 Total: -6.27 kcal Atomic # 7 Polarization: -124.39 SS G_CDS: -3.56 Total: -127.96 kcal Atomic # 8 Polarization: -68.96 SS G_CDS: -4.66 Total: -73.61 kcal Atomic # 14 Polarization: 50.90 SS G_CDS: 1.90 Total: 52.80 kcal Atomic # 16 Polarization: 36.00 SS G_CDS: -0.34 Total: 35.66 kcal Total: -102.79 -3.46 -106.25 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753786350.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.651 kcal (2) G-P(sol) polarization free energy of solvation -102.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -106.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds