Wall clock time and date at job start Wed Apr 1 2020 04:38:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86807 * 119.99971 * 2 1 4 4 H 1.48492 * 109.47199 * 240.00023 * 3 2 1 5 5 H 1.48509 * 109.46863 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46855 * 119.99435 * 3 2 1 7 7 C 1.38812 * 120.00141 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99622 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00169 * 0.02562 * 7 2 1 10 10 C 1.46496 * 119.99670 * 180.27462 * 9 7 2 11 11 C 1.53011 * 109.46488 * 179.72217 * 10 9 7 12 12 C 1.52996 * 109.46709 * 175.08532 * 11 10 9 13 13 H 1.09004 * 109.58598 * 60.14747 * 12 11 10 14 14 C 1.53186 * 109.59156 * 299.86509 * 12 11 10 15 15 C 1.53039 * 109.31601 * 185.57557 * 14 12 11 16 16 C 1.53042 * 109.53489 * 61.36847 * 15 14 12 17 17 C 1.53193 * 109.30953 * 298.63488 * 16 15 14 18 18 N 1.46925 * 109.58509 * 180.43118 * 12 11 10 19 19 C 1.34780 * 120.63148 * 353.39945 * 18 12 11 20 20 O 1.21279 * 119.99694 * 5.43287 * 19 18 12 21 21 C 1.50701 * 120.00116 * 185.43480 * 19 18 12 22 22 C 1.52993 * 109.47206 * 180.02562 * 21 19 18 23 23 C 1.52993 * 109.47436 * 179.97438 * 22 21 19 24 24 S 1.81397 * 109.47534 * 179.97438 * 23 22 21 25 25 N 1.65601 * 104.45304 * 180.02562 * 24 23 22 26 26 O 1.42108 * 110.54094 * 291.62498 * 24 23 22 27 27 O 1.42100 * 110.54437 * 68.37250 * 24 23 22 28 28 H 0.97002 * 120.00119 * 0.02562 * 1 2 3 29 29 H 0.96993 * 119.99427 * 0.02562 * 9 7 2 30 30 H 1.08996 * 109.47363 * 299.72317 * 10 9 7 31 31 H 1.09003 * 109.46863 * 59.73184 * 10 9 7 32 32 H 1.08997 * 109.47049 * 295.08670 * 11 10 9 33 33 H 1.08998 * 109.46395 * 55.09106 * 11 10 9 34 34 H 1.09003 * 109.49970 * 305.53499 * 14 12 11 35 35 H 1.09009 * 109.49874 * 65.62768 * 14 12 11 36 36 H 1.09004 * 109.45939 * 181.38196 * 15 14 12 37 37 H 1.08992 * 109.46107 * 301.35971 * 15 14 12 38 38 H 1.08999 * 109.49908 * 58.58615 * 16 15 14 39 39 H 1.08997 * 109.49563 * 178.68504 * 16 15 14 40 40 H 1.09002 * 109.58534 * 174.42617 * 17 16 15 41 41 H 1.09004 * 109.58292 * 294.70294 * 17 16 15 42 42 H 1.09008 * 109.46797 * 300.00030 * 21 19 18 43 43 H 1.08997 * 109.47056 * 59.99671 * 21 19 18 44 44 H 1.09004 * 109.47244 * 300.00170 * 22 21 19 45 45 H 1.09005 * 109.47081 * 59.99293 * 22 21 19 46 46 H 1.09004 * 109.47136 * 300.00351 * 23 22 21 47 47 H 1.09007 * 109.46955 * 59.99639 * 23 22 21 48 48 H 0.96997 * 120.00088 * 149.99379 * 25 24 23 49 49 H 0.97002 * 119.99951 * 330.00281 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2124 5 1 1.2851 2.7465 0.0006 6 1 3.1038 1.6965 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3256 -2.3881 -0.0016 10 6 2.0582 -3.6567 0.0039 11 6 1.0639 -4.8197 0.0084 12 6 1.8250 -6.1417 -0.1094 13 1 2.5067 -6.2473 0.7346 14 6 2.6211 -6.1612 -1.4180 15 6 3.2675 -7.5368 -1.5969 16 6 2.1773 -8.6077 -1.6788 17 6 1.3761 -8.6160 -0.3731 18 7 0.8719 -7.2598 -0.1158 19 6 -0.4400 -7.0452 0.1066 20 8 -0.8590 -5.9123 0.2164 21 6 -1.3862 -8.2127 0.2187 22 6 -2.8048 -7.6973 0.4688 23 6 -3.7656 -8.8826 0.5821 24 16 -5.4475 -8.2715 0.8794 25 7 -6.3729 -9.6411 0.9807 26 8 -5.5446 -7.6872 2.1711 27 8 -5.9433 -7.5971 -0.2690 28 1 -0.4850 0.8401 -0.0004 29 1 0.3557 -2.3881 -0.0023 30 1 2.6852 -3.7181 -0.8855 31 1 2.6845 -3.7107 0.8945 32 1 0.4963 -4.8088 0.9389 33 1 0.3812 -4.7171 -0.8350 34 1 1.9511 -5.9624 -2.2545 35 1 3.3971 -5.3964 -1.3832 36 1 3.8547 -7.5454 -2.5152 37 1 3.9181 -7.7454 -0.7477 38 1 1.5114 -8.3860 -2.5129 39 1 2.6373 -9.5843 -1.8296 40 1 0.5377 -9.3067 -0.4632 41 1 2.0203 -8.9284 0.4488 42 1 -1.3666 -8.7866 -0.7079 43 1 -1.0795 -8.8506 1.0477 44 1 -2.8248 -7.1232 1.3952 45 1 -3.1112 -7.0596 -0.3604 46 1 -3.7455 -9.4564 -0.3445 47 1 -3.4593 -9.5206 1.4111 48 1 -7.1679 -9.6492 1.5364 49 1 -6.1198 -10.4353 0.4846 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753786351.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:12 Heat of formation + Delta-G solvation = -97.544795 kcal Electronic energy + Delta-G solvation = -29079.954087 eV Core-core repulsion = 24976.488304 eV Total energy + Delta-G solvation = -4103.465783 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.62276 -37.64669 -37.28823 -36.19277 -35.44735 -34.76862 -33.58395 -33.02980 -32.72437 -30.59360 -28.88258 -27.72787 -25.03700 -24.10899 -23.19578 -21.99681 -20.97309 -20.53824 -19.75440 -19.04676 -17.97540 -17.61068 -17.13468 -16.67991 -16.52306 -16.06488 -15.87640 -15.47714 -14.90794 -14.65741 -14.55335 -14.39217 -13.81799 -13.71786 -13.47567 -13.25471 -12.95886 -12.89383 -12.69433 -12.46362 -12.44884 -12.34472 -12.25083 -12.22023 -12.06885 -11.43259 -11.30047 -11.20201 -11.07310 -11.06764 -10.90690 -10.76902 -10.72689 -10.72306 -10.42623 -10.29219 -9.94728 -9.55373 -8.80284 -8.72566 -8.48328 -6.74936 -5.61104 -2.89473 -0.10766 2.52811 2.64174 2.88707 3.37289 3.52531 3.55864 3.58029 3.88560 4.01053 4.45540 4.47234 4.50353 4.62429 4.67607 4.72180 4.82452 4.87257 4.99827 5.03418 5.10706 5.16738 5.29186 5.35344 5.54117 5.54710 5.56462 5.59548 5.68819 5.74387 5.75808 5.79796 5.95430 5.98999 6.15059 6.28021 6.40108 6.44338 6.61739 6.61829 6.70037 7.12475 7.21936 7.42748 7.81077 8.25215 8.57818 9.68013 10.30397 10.65145 11.61717 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.008498 B = 0.002691 C = 0.002095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3294.044258 B =10400.904018 C =13358.831938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.016 4.016 3 Si 0.906 3.094 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.287 1.287 7 C -0.238 4.238 8 H 0.068 0.932 9 N -0.731 5.731 10 C 0.146 3.854 11 C -0.112 4.112 12 C 0.152 3.848 13 H 0.070 0.930 14 C -0.134 4.134 15 C -0.120 4.120 16 C -0.135 4.135 17 C 0.108 3.892 18 N -0.612 5.612 19 C 0.504 3.496 20 O -0.510 6.510 21 C -0.132 4.132 22 C -0.101 4.101 23 C -0.623 4.623 24 S 2.615 3.385 25 N -1.253 6.253 26 O -0.958 6.958 27 O -0.956 6.956 28 H 0.255 0.745 29 H 0.386 0.614 30 H 0.016 0.984 31 H 0.011 0.989 32 H 0.082 0.918 33 H 0.075 0.925 34 H 0.067 0.933 35 H 0.083 0.917 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.067 0.933 39 H 0.072 0.928 40 H 0.081 0.919 41 H 0.068 0.932 42 H 0.094 0.906 43 H 0.095 0.905 44 H 0.092 0.908 45 H 0.091 0.909 46 H 0.133 0.867 47 H 0.136 0.864 48 H 0.420 0.580 49 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.045 -32.426 -0.774 32.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.212 4.212 3 Si 0.738 3.262 4 H -0.214 1.214 5 H -0.217 1.217 6 H -0.214 1.214 7 C -0.369 4.369 8 H 0.086 0.914 9 N -0.375 5.375 10 C 0.018 3.982 11 C -0.150 4.150 12 C 0.049 3.951 13 H 0.088 0.912 14 C -0.172 4.172 15 C -0.158 4.158 16 C -0.174 4.174 17 C -0.016 4.016 18 N -0.346 5.346 19 C 0.292 3.708 20 O -0.385 6.385 21 C -0.173 4.173 22 C -0.140 4.140 23 C -0.753 4.753 24 S 2.706 3.294 25 N -0.925 5.925 26 O -0.948 6.948 27 O -0.945 6.945 28 H 0.065 0.935 29 H 0.219 0.781 30 H 0.034 0.966 31 H 0.029 0.971 32 H 0.101 0.899 33 H 0.094 0.906 34 H 0.086 0.914 35 H 0.101 0.899 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.085 0.915 39 H 0.091 0.909 40 H 0.100 0.900 41 H 0.086 0.914 42 H 0.112 0.888 43 H 0.113 0.887 44 H 0.110 0.890 45 H 0.110 0.890 46 H 0.151 0.849 47 H 0.154 0.846 48 H 0.249 0.751 49 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -4.382 -30.601 -0.627 30.919 hybrid contribution 0.564 -0.241 -0.130 0.627 sum -3.818 -30.841 -0.757 31.086 Atomic orbital electron populations 1.69673 1.05051 1.25577 1.57753 1.24755 0.95507 0.97600 1.03354 0.86278 0.78473 0.83774 0.77718 1.21389 1.21719 1.21381 1.19191 0.90880 0.84337 1.42526 0.91422 1.42346 1.06058 0.99858 1.89221 1.20838 0.93760 0.86520 0.97099 1.22222 0.97297 0.90701 1.04773 1.21315 0.90155 0.86434 0.97185 0.91223 1.22075 1.00147 0.97040 0.97959 1.21538 0.97386 0.94876 1.01996 1.21921 0.98272 0.99556 0.97609 1.21718 0.98767 0.83530 0.97553 1.48187 1.07051 1.08139 1.71253 1.20577 0.82453 0.90776 0.77030 1.90914 1.76394 1.22870 1.48338 1.21673 0.93901 0.97673 1.04068 1.21089 0.92794 0.94411 1.05735 1.30498 1.22496 1.10242 1.12041 1.04797 0.76429 0.73425 0.74786 1.53294 1.42632 1.32564 1.64051 1.93632 1.85695 1.74958 1.40469 1.93647 1.76938 1.71185 1.52742 0.93532 0.78057 0.96635 0.97135 0.89930 0.90641 0.91380 0.89876 0.91738 0.91860 0.91463 0.90947 0.90018 0.91407 0.88778 0.88706 0.88961 0.88995 0.84851 0.84580 0.75065 0.76299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -30.16 13.06 55.49 0.72 -29.44 16 2 C -0.02 -0.50 5.50 -17.43 -0.10 -0.59 16 3 Si 0.91 23.56 29.55 -169.99 -5.02 18.54 16 4 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 5 H -0.29 -7.59 7.11 56.52 0.40 -7.19 16 6 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 7 C -0.24 -7.14 9.99 -15.06 -0.15 -7.29 16 8 H 0.07 1.95 7.83 -52.48 -0.41 1.53 16 9 N -0.73 -20.46 5.60 -59.90 -0.34 -20.79 16 10 C 0.15 3.22 6.05 -4.04 -0.02 3.19 16 11 C -0.11 -2.12 3.26 -26.73 -0.09 -2.20 16 12 C 0.15 2.10 3.01 -67.60 -0.20 1.90 16 13 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 14 C -0.13 -1.64 4.86 -26.61 -0.13 -1.77 16 15 C -0.12 -1.06 5.88 -26.69 -0.16 -1.21 16 16 C -0.14 -0.95 6.08 -26.61 -0.16 -1.12 16 17 C 0.11 0.77 6.32 -3.69 -0.02 0.74 16 18 N -0.61 -6.98 2.98 -165.19 -0.49 -7.47 16 19 C 0.50 6.48 7.61 -10.98 -0.08 6.39 16 20 O -0.51 -9.10 11.39 5.56 0.06 -9.03 16 21 C -0.13 -1.03 4.11 -27.89 -0.11 -1.15 16 22 C -0.10 -0.91 4.51 -26.74 -0.12 -1.03 16 23 C -0.62 -2.93 6.17 37.15 0.23 -2.70 16 24 S 2.61 20.50 5.97 -107.50 -0.64 19.86 16 25 N -1.25 -4.67 9.36 60.35 0.57 -4.11 16 26 O -0.96 -11.76 18.10 -57.54 -1.04 -12.80 16 27 O -0.96 -11.94 18.10 -57.54 -1.04 -12.98 16 28 H 0.25 7.94 8.31 -40.82 -0.34 7.61 16 29 H 0.39 11.58 7.67 -40.82 -0.31 11.26 16 30 H 0.02 0.34 6.32 -51.93 -0.33 0.01 16 31 H 0.01 0.24 8.14 -51.93 -0.42 -0.19 16 32 H 0.08 1.73 6.48 -51.93 -0.34 1.40 16 33 H 0.08 1.59 7.01 -51.93 -0.36 1.23 16 34 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 35 H 0.08 1.09 6.65 -51.92 -0.35 0.74 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 40 H 0.08 0.38 5.97 -51.93 -0.31 0.07 16 41 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.09 0.50 7.46 -51.92 -0.39 0.11 16 43 H 0.09 0.51 8.12 -51.93 -0.42 0.09 16 44 H 0.09 0.97 8.10 -51.93 -0.42 0.54 16 45 H 0.09 0.96 8.10 -51.93 -0.42 0.54 16 46 H 0.13 0.24 8.14 -51.92 -0.42 -0.19 16 47 H 0.14 0.29 8.14 -51.92 -0.42 -0.13 16 48 H 0.42 1.35 8.96 -34.47 -0.31 1.04 16 49 H 0.41 0.21 8.96 -34.47 -0.31 -0.10 16 LS Contribution 396.16 15.07 5.97 5.97 Total: -1.00 -42.82 396.16 -10.41 -53.24 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: -8.04 Total: 5.85 kcal Atomic # 6 Polarization: -5.72 SS G_CDS: -1.12 Total: -6.84 kcal Atomic # 7 Polarization: -62.27 SS G_CDS: 0.46 Total: -61.81 kcal Atomic # 8 Polarization: -32.79 SS G_CDS: -2.02 Total: -34.81 kcal Atomic # 14 Polarization: 23.56 SS G_CDS: -5.02 Total: 18.54 kcal Atomic # 16 Polarization: 20.50 SS G_CDS: -0.64 Total: 19.86 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -42.82 -10.41 -53.24 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753786351.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.307 kcal (2) G-P(sol) polarization free energy of solvation -42.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds