Wall clock time and date at job start Wed Apr 1 2020 04:38:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86807 * 119.99971 * 2 1 4 4 H 1.48492 * 109.47199 * 240.00023 * 3 2 1 5 5 H 1.48509 * 109.46863 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46855 * 119.99435 * 3 2 1 7 7 C 1.38812 * 120.00141 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99622 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00169 * 0.02562 * 7 2 1 10 10 C 1.46496 * 119.99670 * 180.27462 * 9 7 2 11 11 C 1.53011 * 109.46488 * 179.72217 * 10 9 7 12 12 C 1.52996 * 109.46709 * 175.08532 * 11 10 9 13 13 H 1.09004 * 109.58598 * 60.14747 * 12 11 10 14 14 C 1.53186 * 109.59156 * 299.86509 * 12 11 10 15 15 C 1.53039 * 109.31601 * 185.57557 * 14 12 11 16 16 C 1.53042 * 109.53489 * 61.36847 * 15 14 12 17 17 C 1.53193 * 109.30953 * 298.63488 * 16 15 14 18 18 N 1.46925 * 109.58509 * 180.43118 * 12 11 10 19 19 C 1.34780 * 120.63148 * 353.39945 * 18 12 11 20 20 O 1.21279 * 119.99694 * 5.43287 * 19 18 12 21 21 C 1.50701 * 120.00116 * 185.43480 * 19 18 12 22 22 C 1.52993 * 109.47206 * 180.02562 * 21 19 18 23 23 C 1.52993 * 109.47436 * 179.97438 * 22 21 19 24 24 S 1.81397 * 109.47534 * 179.97438 * 23 22 21 25 25 N 1.65601 * 104.45304 * 180.02562 * 24 23 22 26 26 O 1.42108 * 110.54094 * 291.62498 * 24 23 22 27 27 O 1.42100 * 110.54437 * 68.37250 * 24 23 22 28 28 H 0.97002 * 120.00119 * 0.02562 * 1 2 3 29 29 H 0.96993 * 119.99427 * 0.02562 * 9 7 2 30 30 H 1.08996 * 109.47363 * 299.72317 * 10 9 7 31 31 H 1.09003 * 109.46863 * 59.73184 * 10 9 7 32 32 H 1.08997 * 109.47049 * 295.08670 * 11 10 9 33 33 H 1.08998 * 109.46395 * 55.09106 * 11 10 9 34 34 H 1.09003 * 109.49970 * 305.53499 * 14 12 11 35 35 H 1.09009 * 109.49874 * 65.62768 * 14 12 11 36 36 H 1.09004 * 109.45939 * 181.38196 * 15 14 12 37 37 H 1.08992 * 109.46107 * 301.35971 * 15 14 12 38 38 H 1.08999 * 109.49908 * 58.58615 * 16 15 14 39 39 H 1.08997 * 109.49563 * 178.68504 * 16 15 14 40 40 H 1.09002 * 109.58534 * 174.42617 * 17 16 15 41 41 H 1.09004 * 109.58292 * 294.70294 * 17 16 15 42 42 H 1.09008 * 109.46797 * 300.00030 * 21 19 18 43 43 H 1.08997 * 109.47056 * 59.99671 * 21 19 18 44 44 H 1.09004 * 109.47244 * 300.00170 * 22 21 19 45 45 H 1.09005 * 109.47081 * 59.99293 * 22 21 19 46 46 H 1.09004 * 109.47136 * 300.00351 * 23 22 21 47 47 H 1.09007 * 109.46955 * 59.99639 * 23 22 21 48 48 H 0.96997 * 120.00088 * 149.99379 * 25 24 23 49 49 H 0.97002 * 119.99951 * 330.00281 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2124 5 1 1.2851 2.7465 0.0006 6 1 3.1038 1.6965 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3256 -2.3881 -0.0016 10 6 2.0582 -3.6567 0.0039 11 6 1.0639 -4.8197 0.0084 12 6 1.8250 -6.1417 -0.1094 13 1 2.5067 -6.2473 0.7346 14 6 2.6211 -6.1612 -1.4180 15 6 3.2675 -7.5368 -1.5969 16 6 2.1773 -8.6077 -1.6788 17 6 1.3761 -8.6160 -0.3731 18 7 0.8719 -7.2598 -0.1158 19 6 -0.4400 -7.0452 0.1066 20 8 -0.8590 -5.9123 0.2164 21 6 -1.3862 -8.2127 0.2187 22 6 -2.8048 -7.6973 0.4688 23 6 -3.7656 -8.8826 0.5821 24 16 -5.4475 -8.2715 0.8794 25 7 -6.3729 -9.6411 0.9807 26 8 -5.5446 -7.6872 2.1711 27 8 -5.9433 -7.5971 -0.2690 28 1 -0.4850 0.8401 -0.0004 29 1 0.3557 -2.3881 -0.0023 30 1 2.6852 -3.7181 -0.8855 31 1 2.6845 -3.7107 0.8945 32 1 0.4963 -4.8088 0.9389 33 1 0.3812 -4.7171 -0.8350 34 1 1.9511 -5.9624 -2.2545 35 1 3.3971 -5.3964 -1.3832 36 1 3.8547 -7.5454 -2.5152 37 1 3.9181 -7.7454 -0.7477 38 1 1.5114 -8.3860 -2.5129 39 1 2.6373 -9.5843 -1.8296 40 1 0.5377 -9.3067 -0.4632 41 1 2.0203 -8.9284 0.4488 42 1 -1.3666 -8.7866 -0.7079 43 1 -1.0795 -8.8506 1.0477 44 1 -2.8248 -7.1232 1.3952 45 1 -3.1112 -7.0596 -0.3604 46 1 -3.7455 -9.4564 -0.3445 47 1 -3.4593 -9.5206 1.4111 48 1 -7.1679 -9.6492 1.5364 49 1 -6.1198 -10.4353 0.4846 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753786351.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:11 Heat of formation + Delta-G solvation = -134.480505 kcal Electronic energy + Delta-G solvation = -29081.555739 eV Core-core repulsion = 24976.488304 eV Total energy + Delta-G solvation = -4105.067436 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.59682 -38.59820 -38.07475 -37.01387 -36.97051 -35.79577 -34.44830 -33.98774 -33.79835 -32.41533 -29.53500 -29.21018 -26.34223 -25.34225 -24.42869 -23.24420 -22.07274 -21.64659 -20.36283 -19.90616 -19.22556 -18.50449 -18.18038 -17.54122 -17.35623 -17.09352 -16.70004 -16.56247 -16.14597 -15.89478 -15.49974 -15.41372 -15.21490 -15.03703 -14.66454 -14.56770 -14.14670 -13.87243 -13.64518 -13.34591 -13.24466 -13.15339 -13.10739 -13.04092 -13.01038 -12.85545 -12.78216 -12.64534 -12.27498 -12.19223 -11.98436 -11.87301 -11.84972 -11.75603 -11.68928 -11.48917 -11.35480 -11.15329 -10.92955 -9.99852 -9.47366 -9.03424 -7.96414 -5.27804 -0.69684 1.42584 1.48463 1.54759 1.71803 1.97058 2.08640 2.54030 2.79680 3.35297 3.37064 3.42688 3.67361 3.83358 3.85923 3.88585 3.96617 4.12111 4.13908 4.17483 4.29189 4.39573 4.44361 4.49231 4.57707 4.62878 4.66648 4.73700 4.77743 4.83638 4.92285 4.94432 5.00905 5.09901 5.14168 5.19505 5.25539 5.32320 5.39180 5.41150 5.48738 5.53206 5.74377 6.24161 6.44137 6.54174 7.28261 7.32168 8.05834 8.30111 9.27621 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.008498 B = 0.002691 C = 0.002095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3294.044258 B =10400.904018 C =13358.831938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.975 5.975 2 C -0.083 4.083 3 Si 0.984 3.016 4 H -0.273 1.273 5 H -0.294 1.294 6 H -0.274 1.274 7 C -0.250 4.250 8 H 0.079 0.921 9 N -0.750 5.750 10 C 0.145 3.855 11 C -0.089 4.089 12 C 0.157 3.843 13 H 0.080 0.920 14 C -0.131 4.131 15 C -0.116 4.116 16 C -0.132 4.132 17 C 0.100 3.900 18 N -0.610 5.610 19 C 0.488 3.512 20 O -0.578 6.578 21 C -0.120 4.120 22 C -0.115 4.115 23 C -0.589 4.589 24 S 2.612 3.388 25 N -1.234 6.234 26 O -1.013 7.013 27 O -1.016 7.016 28 H 0.252 0.748 29 H 0.369 0.631 30 H 0.027 0.973 31 H 0.016 0.984 32 H 0.054 0.946 33 H 0.044 0.956 34 H 0.046 0.954 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.075 0.925 38 H 0.057 0.943 39 H 0.106 0.894 40 H 0.119 0.881 41 H 0.087 0.913 42 H 0.134 0.866 43 H 0.135 0.865 44 H 0.064 0.936 45 H 0.063 0.937 46 H 0.179 0.821 47 H 0.178 0.822 48 H 0.424 0.576 49 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.722 -36.836 -1.089 36.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.625 5.625 2 C -0.275 4.275 3 Si 0.811 3.189 4 H -0.199 1.199 5 H -0.220 1.220 6 H -0.200 1.200 7 C -0.382 4.382 8 H 0.097 0.903 9 N -0.392 5.392 10 C 0.018 3.982 11 C -0.127 4.127 12 C 0.053 3.947 13 H 0.098 0.902 14 C -0.169 4.169 15 C -0.154 4.154 16 C -0.170 4.170 17 C -0.021 4.021 18 N -0.343 5.343 19 C 0.278 3.722 20 O -0.458 6.458 21 C -0.160 4.160 22 C -0.155 4.155 23 C -0.722 4.722 24 S 2.708 3.292 25 N -0.911 5.911 26 O -1.003 7.003 27 O -1.005 7.005 28 H 0.060 0.940 29 H 0.200 0.800 30 H 0.045 0.955 31 H 0.033 0.967 32 H 0.073 0.927 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.087 0.913 36 H 0.090 0.910 37 H 0.094 0.906 38 H 0.076 0.924 39 H 0.124 0.876 40 H 0.137 0.863 41 H 0.105 0.895 42 H 0.152 0.848 43 H 0.153 0.847 44 H 0.083 0.917 45 H 0.082 0.918 46 H 0.196 0.804 47 H 0.196 0.804 48 H 0.255 0.745 49 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -2.037 -35.096 -0.952 35.168 hybrid contribution -0.095 1.030 -0.048 1.036 sum -2.132 -34.066 -1.000 34.148 Atomic orbital electron populations 1.69881 1.07021 1.26251 1.59364 1.25766 0.96486 1.01702 1.03535 0.85069 0.77071 0.78310 0.78432 1.19910 1.22036 1.20004 1.19684 0.91576 0.85326 1.41614 0.90295 1.42650 1.05539 1.01588 1.89379 1.21046 0.94252 0.85546 0.97377 1.21892 0.95953 0.92858 1.02004 1.21079 0.90220 0.84906 0.98537 0.90162 1.22005 0.99228 0.99577 0.96093 1.21531 0.98075 0.92815 1.02946 1.21937 0.97506 1.00340 0.97218 1.22156 1.00566 0.81183 0.98217 1.48327 1.06319 1.09286 1.70358 1.21650 0.83357 0.91502 0.75676 1.90902 1.77548 1.25980 1.51367 1.21740 0.90943 0.95774 1.07565 1.21110 0.95153 0.95800 1.03442 1.30205 1.16910 1.08968 1.16164 1.04372 0.78116 0.73886 0.72823 1.52774 1.42281 1.31900 1.64184 1.93562 1.87150 1.77030 1.42544 1.93583 1.79108 1.73633 1.54131 0.93982 0.80034 0.95544 0.96651 0.92707 0.93738 0.93493 0.91271 0.90954 0.90595 0.92396 0.87588 0.86334 0.89483 0.84800 0.84723 0.91724 0.91791 0.80374 0.80410 0.74520 0.74052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -65.66 13.06 21.65 0.28 -65.38 16 2 C -0.08 -5.21 5.50 84.86 0.47 -4.75 16 3 Si 0.98 49.35 29.55 68.60 2.03 51.38 16 4 H -0.27 -13.00 7.11 99.48 0.71 -12.30 16 5 H -0.29 -14.78 7.11 99.48 0.71 -14.07 16 6 H -0.27 -13.09 7.11 99.48 0.71 -12.38 16 7 C -0.25 -15.43 9.99 84.03 0.84 -14.59 16 8 H 0.08 4.57 7.83 -2.91 -0.02 4.55 16 9 N -0.75 -44.17 5.60 -343.44 -1.92 -46.09 16 10 C 0.14 6.67 6.05 86.38 0.52 7.19 16 11 C -0.09 -3.60 3.26 30.60 0.10 -3.50 16 12 C 0.16 4.32 3.01 44.97 0.14 4.45 16 13 H 0.08 2.05 8.14 -2.38 -0.02 2.04 16 14 C -0.13 -3.15 4.86 30.67 0.15 -3.00 16 15 C -0.12 -1.69 5.88 30.62 0.18 -1.51 16 16 C -0.13 -1.27 6.08 30.67 0.19 -1.09 16 17 C 0.10 0.93 6.32 86.36 0.55 1.48 16 18 N -0.61 -12.85 2.98 -794.94 -2.37 -15.22 16 19 C 0.49 12.32 7.61 87.66 0.67 12.99 16 20 O -0.58 -22.32 11.39 -3.03 -0.03 -22.36 16 21 C -0.12 -1.45 4.11 29.85 0.12 -1.33 16 22 C -0.12 -1.98 4.51 30.59 0.14 -1.84 16 23 C -0.59 -3.56 6.17 71.98 0.44 -3.12 16 24 S 2.61 41.14 5.97 -56.49 -0.34 40.80 16 25 N -1.23 -7.24 9.36 37.02 0.35 -6.90 16 26 O -1.01 -26.41 18.10 -127.65 -2.31 -28.72 16 27 O -1.02 -26.95 18.10 -127.65 -2.31 -29.27 16 28 H 0.25 16.30 8.31 -92.71 -0.77 15.52 16 29 H 0.37 23.77 7.67 -92.71 -0.71 23.06 16 30 H 0.03 1.18 6.32 -2.39 -0.02 1.16 16 31 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.05 2.51 6.48 -2.39 -0.02 2.49 16 33 H 0.04 2.05 7.01 -2.39 -0.02 2.04 16 34 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.07 1.82 6.65 -2.38 -0.02 1.80 16 36 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 37 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 40 H 0.12 0.28 5.97 -2.39 -0.01 0.27 16 41 H 0.09 0.58 8.14 -2.38 -0.02 0.56 16 42 H 0.13 0.62 7.46 -2.38 -0.02 0.60 16 43 H 0.13 0.64 8.12 -2.39 -0.02 0.62 16 44 H 0.06 1.45 8.10 -2.38 -0.02 1.43 16 45 H 0.06 1.44 8.10 -2.38 -0.02 1.42 16 46 H 0.18 -0.40 8.14 -2.39 -0.02 -0.42 16 47 H 0.18 -0.26 8.14 -2.39 -0.02 -0.28 16 48 H 0.42 2.30 8.96 -96.75 -0.87 1.44 16 49 H 0.43 -0.87 8.96 -96.74 -0.87 -1.73 16 Total: -1.00 -104.02 396.16 -3.60 -107.61 By element: Atomic # 1 Polarization: 24.23 SS G_CDS: -1.47 Total: 22.76 kcal Atomic # 6 Polarization: -13.12 SS G_CDS: 4.50 Total: -8.63 kcal Atomic # 7 Polarization: -129.92 SS G_CDS: -3.66 Total: -133.58 kcal Atomic # 8 Polarization: -75.69 SS G_CDS: -4.66 Total: -80.34 kcal Atomic # 14 Polarization: 49.35 SS G_CDS: 2.03 Total: 51.38 kcal Atomic # 16 Polarization: 41.14 SS G_CDS: -0.34 Total: 40.80 kcal Total: -104.02 -3.60 -107.61 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753786351.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.867 kcal (2) G-P(sol) polarization free energy of solvation -104.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -107.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds