Wall clock time and date at job start Wed Apr 1 2020 05:08:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47025 * 2 1 4 4 C 1.52996 * 109.47187 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.47394 * 54.99489 * 4 3 2 6 6 C 1.50703 * 109.47474 * 175.00038 * 4 3 2 7 7 O 1.21279 * 119.99784 * 34.98993 * 6 4 3 8 8 N 1.34768 * 120.00046 * 215.00032 * 6 4 3 9 9 C 1.46498 * 120.00333 * 179.97438 * 8 6 4 10 10 H 1.09003 * 110.21230 * 34.99466 * 9 8 6 11 11 C 1.50117 * 110.25487 * 156.92959 * 9 8 6 12 12 C 1.54634 * 110.93364 * 216.54949 * 11 9 8 13 13 C 1.54905 * 110.18740 * 321.33575 * 12 11 9 14 14 N 1.43434 * 116.07875 * 318.52958 * 13 12 11 15 15 C 1.36940 * 120.53634 * 271.59019 * 14 13 12 16 16 H 1.07997 * 120.00082 * 336.68295 * 15 14 13 17 17 C 1.38814 * 120.00069 * 156.68623 * 15 14 13 18 18 N 1.31622 * 119.99801 * 340.40307 * 17 15 14 19 19 Si 1.86797 * 119.99966 * 160.39857 * 17 15 14 20 20 H 1.48498 * 109.46875 * 90.00332 * 19 17 15 21 21 H 1.48504 * 109.47330 * 210.00257 * 19 17 15 22 22 H 1.48503 * 109.47263 * 330.00221 * 19 17 15 23 23 C 1.50171 * 118.92716 * 91.56487 * 14 13 12 24 24 C 1.46237 * 107.53173 * 289.59015 * 23 14 13 25 25 S 1.81406 * 109.46711 * 294.99463 * 4 3 2 26 26 N 1.65594 * 104.45057 * 300.00333 * 25 4 3 27 27 O 1.42104 * 110.53974 * 51.63070 * 25 4 3 28 28 O 1.42099 * 110.54185 * 188.37510 * 25 4 3 29 29 H 1.08996 * 109.47238 * 60.00305 * 1 2 3 30 30 H 1.09000 * 109.47076 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47033 * 300.00272 * 1 2 3 32 32 H 1.08997 * 109.47301 * 240.00072 * 2 1 3 33 33 H 1.08996 * 109.47238 * 119.99695 * 2 1 3 34 34 H 1.08995 * 109.47173 * 59.99376 * 3 2 1 35 35 H 1.09006 * 109.46804 * 300.00064 * 3 2 1 36 36 H 0.97000 * 120.00105 * 359.97438 * 8 6 4 37 37 H 1.09005 * 109.20848 * 336.99961 * 11 9 8 38 38 H 1.09002 * 109.20960 * 96.31398 * 11 9 8 39 39 H 1.08999 * 109.42692 * 201.05880 * 12 11 9 40 40 H 1.08996 * 109.13560 * 81.42888 * 12 11 9 41 41 H 1.08999 * 108.15933 * 196.81174 * 13 12 11 42 42 H 1.08995 * 107.99992 * 80.12084 * 13 12 11 43 43 H 0.97003 * 119.99299 * 179.97438 * 18 17 15 44 44 H 1.08995 * 109.84472 * 170.08541 * 23 14 13 45 45 H 1.08996 * 109.89939 * 49.13070 * 23 14 13 46 46 H 1.09005 * 108.52618 * 297.16523 * 24 23 14 47 47 H 1.09006 * 108.52010 * 179.64810 * 24 23 14 48 48 H 0.96995 * 120.00413 * 359.97438 * 26 25 4 49 49 H 0.96999 * 119.99670 * 180.02562 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 1 3.9330 0.8532 -0.8426 6 6 4.0723 2.8580 -0.1245 7 8 3.4634 3.7657 0.4011 8 7 5.1980 3.1152 -0.8194 9 6 5.6861 4.4912 -0.9403 10 1 5.4819 5.0451 -0.0239 11 6 7.1583 4.4965 -1.2335 12 6 7.8602 5.6731 -0.5164 13 6 6.9618 6.9344 -0.5538 14 7 6.2834 7.1888 -1.7917 15 6 6.8847 7.9274 -2.7757 16 1 7.6706 8.6240 -2.5240 17 6 6.4840 7.7807 -4.0966 18 7 5.8306 6.7009 -4.4701 19 14 6.8719 9.1160 -5.3440 20 1 8.1883 8.8386 -5.9727 21 1 5.8183 9.1371 -6.3904 22 1 6.9174 10.4337 -4.6607 23 6 4.9033 6.6316 -1.9915 24 6 5.0297 5.1814 -2.1315 25 16 4.1752 0.7197 1.5492 26 7 3.5574 1.7006 2.7317 27 8 3.5627 -0.5409 1.7840 28 8 5.5826 0.8821 1.6589 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 1.6766 1.9564 0.8899 35 1 1.6766 1.9564 -0.8900 36 1 5.6851 2.3892 -1.2396 37 1 7.5950 3.5572 -0.8940 38 1 7.3096 4.5937 -2.3085 39 1 8.8061 5.8883 -1.0135 40 1 8.0517 5.3966 0.5204 41 1 7.5820 7.8003 -0.3222 42 1 6.2116 6.8371 0.2309 43 1 5.5503 6.5986 -5.3931 44 1 4.4610 7.0533 -2.8941 45 1 4.2796 6.8672 -1.1292 46 1 5.6203 4.9697 -3.0229 47 1 4.0346 4.7590 -2.2714 48 1 3.0066 2.4620 2.4915 49 1 3.7469 1.5141 3.6645 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755026456.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:08:59 Heat of formation + Delta-G solvation = -88.988296 kcal Electronic energy + Delta-G solvation = -30756.089966 eV Core-core repulsion = 26652.995221 eV Total energy + Delta-G solvation = -4103.094745 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 2.02 seconds Orbital eigenvalues (eV) -40.14852 -37.93914 -37.54252 -36.27129 -35.66369 -34.73039 -33.30039 -32.64149 -31.50860 -30.74150 -30.21966 -26.32342 -25.28702 -23.69233 -23.13442 -21.70000 -20.87436 -20.13100 -19.74390 -19.20426 -18.30438 -17.78550 -16.86290 -16.72858 -16.26801 -15.96981 -15.73506 -14.96495 -14.80057 -14.36450 -14.21155 -14.07411 -13.90374 -13.77085 -13.34702 -13.08903 -12.87341 -12.70098 -12.43586 -12.39201 -12.32984 -12.09541 -11.89957 -11.73096 -11.46745 -11.28773 -11.25958 -11.21379 -10.86557 -10.76352 -10.59699 -10.49739 -10.40022 -10.20346 -10.11999 -9.84724 -9.75951 -9.55693 -9.30642 -8.78153 -8.39938 -6.73725 -5.81628 -3.19938 -0.18903 2.41153 2.56587 3.02541 3.25196 3.36002 3.43912 3.46874 3.78981 4.21503 4.49547 4.50869 4.59852 4.80445 4.89215 5.20661 5.30745 5.35400 5.37967 5.54187 5.58239 5.58477 5.61953 5.74868 5.79904 5.87163 5.94550 6.09592 6.15370 6.18816 6.26624 6.38575 6.48720 6.60090 6.83132 6.86364 6.88771 6.89384 6.99439 7.09114 7.15951 7.49741 7.60331 7.71165 7.90604 8.13480 8.40796 9.17037 9.85120 10.38313 11.25837 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.018633 B = 0.002952 C = 0.002706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.358218 B = 9482.436010 C =10345.363892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.169 4.169 3 C -0.087 4.087 4 C -0.615 4.615 5 H 0.159 0.841 6 C 0.529 3.471 7 O -0.522 6.522 8 N -0.701 5.701 9 C 0.144 3.856 10 H 0.089 0.911 11 C -0.116 4.116 12 C -0.140 4.140 13 C 0.153 3.847 14 N -0.589 5.589 15 C -0.246 4.246 16 H 0.067 0.933 17 C 0.001 3.999 18 N -0.902 5.902 19 Si 0.899 3.101 20 H -0.289 1.289 21 H -0.291 1.291 22 H -0.281 1.281 23 C 0.169 3.831 24 C -0.132 4.132 25 S 2.630 3.370 26 N -1.244 6.244 27 O -0.950 6.950 28 O -0.951 6.951 29 H 0.054 0.946 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.068 0.932 33 H 0.106 0.894 34 H 0.084 0.916 35 H 0.090 0.910 36 H 0.398 0.602 37 H 0.045 0.955 38 H 0.082 0.918 39 H 0.056 0.944 40 H 0.046 0.954 41 H 0.034 0.966 42 H 0.029 0.971 43 H 0.252 0.748 44 H 0.092 0.908 45 H 0.010 0.990 46 H 0.104 0.896 47 H 0.029 0.971 48 H 0.421 0.579 49 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.020 -13.987 10.354 18.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.206 4.206 3 C -0.126 4.126 4 C -0.726 4.726 5 H 0.177 0.823 6 C 0.311 3.689 7 O -0.399 6.399 8 N -0.350 5.350 9 C 0.041 3.959 10 H 0.107 0.893 11 C -0.154 4.154 12 C -0.181 4.181 13 C 0.024 3.976 14 N -0.310 5.310 15 C -0.375 4.375 16 H 0.085 0.915 17 C -0.197 4.197 18 N -0.548 5.548 19 Si 0.730 3.270 20 H -0.216 1.216 21 H -0.217 1.217 22 H -0.207 1.207 23 C 0.045 3.955 24 C -0.172 4.172 25 S 2.717 3.283 26 N -0.921 5.921 27 O -0.939 6.939 28 O -0.940 6.940 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.087 0.913 33 H 0.124 0.876 34 H 0.103 0.897 35 H 0.108 0.892 36 H 0.232 0.768 37 H 0.064 0.936 38 H 0.100 0.900 39 H 0.075 0.925 40 H 0.065 0.935 41 H 0.052 0.948 42 H 0.047 0.953 43 H 0.062 0.938 44 H 0.110 0.890 45 H 0.028 0.972 46 H 0.122 0.878 47 H 0.048 0.952 48 H 0.250 0.750 49 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -6.878 -14.206 10.506 18.960 hybrid contribution 0.077 0.775 -1.345 1.554 sum -6.802 -13.431 9.161 17.623 Atomic orbital electron populations 1.21691 0.94898 1.01947 1.02000 1.22256 0.97483 0.95448 1.05412 1.21300 0.86504 0.98963 1.05800 1.30645 1.09703 1.07352 1.24867 0.82289 1.19034 0.81673 0.87715 0.80497 1.90736 1.56337 1.45208 1.47620 1.46298 1.25269 1.11334 1.52078 1.20650 0.94759 0.79549 1.00942 0.89314 1.21678 0.93153 0.97661 1.02903 1.22797 0.99984 0.97439 0.97923 1.20451 0.93884 0.94003 0.89243 1.44266 1.12128 1.60158 1.14426 1.19211 1.17847 1.14142 0.86314 0.91507 1.24875 1.01147 0.96897 0.96739 1.69958 1.43607 1.24796 1.16400 0.86343 0.77352 0.82186 0.81156 1.21642 1.21707 1.20661 1.20084 0.85142 0.91230 0.99040 1.21354 0.99388 0.98298 0.98140 1.04458 0.74323 0.74044 0.75436 1.52954 1.70903 1.46730 1.21561 1.93551 1.77152 1.40256 1.82947 1.93645 1.30090 1.85887 1.84415 0.92699 0.92338 0.92471 0.91322 0.87576 0.89710 0.89178 0.76793 0.93626 0.89984 0.92507 0.93513 0.94752 0.95260 0.93838 0.89040 0.97222 0.87828 0.95190 0.74961 0.75009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.91 37.16 0.37 -0.75 16 2 C -0.17 -1.42 5.65 -26.73 -0.15 -1.57 16 3 C -0.09 -0.79 4.21 -26.73 -0.11 -0.91 16 4 C -0.62 -6.08 2.75 -27.88 -0.08 -6.16 16 5 H 0.16 1.10 8.11 -51.92 -0.42 0.68 16 6 C 0.53 7.31 6.51 -10.99 -0.07 7.23 16 7 O -0.52 -8.49 15.19 5.56 0.08 -8.41 16 8 N -0.70 -10.22 4.98 -55.45 -0.28 -10.50 16 9 C 0.14 2.58 2.19 -69.61 -0.15 2.42 16 10 H 0.09 1.72 5.77 -51.93 -0.30 1.42 16 11 C -0.12 -2.08 5.29 -27.31 -0.14 -2.22 16 12 C -0.14 -2.56 6.40 -24.87 -0.16 -2.72 16 13 C 0.15 3.16 5.18 -4.66 -0.02 3.14 16 14 N -0.59 -14.08 2.60 -175.08 -0.46 -14.53 16 15 C -0.25 -6.45 9.63 -15.06 -0.14 -6.59 16 16 H 0.07 1.75 7.89 -52.49 -0.41 1.34 16 17 C 0.00 0.03 4.91 -17.43 -0.09 -0.06 16 18 N -0.90 -24.14 9.43 55.49 0.52 -23.62 16 19 Si 0.90 21.09 29.60 -169.99 -5.03 16.06 16 20 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 23 C 0.17 3.92 5.24 -5.20 -0.03 3.89 16 24 C -0.13 -2.76 4.73 -30.19 -0.14 -2.90 16 25 S 2.63 27.59 5.46 -107.50 -0.59 27.00 16 26 N -1.24 -10.89 9.13 60.35 0.55 -10.34 16 27 O -0.95 -11.11 14.89 -57.54 -0.86 -11.97 16 28 O -0.95 -13.25 18.01 -57.54 -1.04 -14.28 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.11 0.99 4.90 -51.93 -0.25 0.74 16 34 H 0.08 0.72 6.96 -51.93 -0.36 0.36 16 35 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 36 H 0.40 4.77 8.46 -40.82 -0.35 4.42 16 37 H 0.05 0.71 7.83 -51.93 -0.41 0.31 16 38 H 0.08 1.70 6.84 -51.93 -0.36 1.34 16 39 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 41 H 0.03 0.70 7.99 -51.93 -0.41 0.29 16 42 H 0.03 0.58 6.88 -51.93 -0.36 0.22 16 43 H 0.25 6.64 8.31 -40.82 -0.34 6.30 16 44 H 0.09 2.37 6.05 -51.93 -0.31 2.05 16 45 H 0.01 0.22 8.13 -51.93 -0.42 -0.20 16 46 H 0.10 2.44 5.30 -51.93 -0.28 2.16 16 47 H 0.03 0.61 7.96 -51.93 -0.41 0.20 16 48 H 0.42 3.56 6.95 -34.47 -0.24 3.32 16 49 H 0.42 2.86 8.96 -34.46 -0.31 2.55 16 LS Contribution 383.51 15.07 5.78 5.78 Total: -1.00 -32.24 383.51 -9.93 -42.16 By element: Atomic # 1 Polarization: 17.54 SS G_CDS: -7.70 Total: 9.84 kcal Atomic # 6 Polarization: -6.27 SS G_CDS: -0.92 Total: -7.20 kcal Atomic # 7 Polarization: -59.33 SS G_CDS: 0.34 Total: -58.99 kcal Atomic # 8 Polarization: -32.85 SS G_CDS: -1.81 Total: -34.66 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.03 Total: 16.06 kcal Atomic # 16 Polarization: 27.59 SS G_CDS: -0.59 Total: 27.00 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -32.24 -9.93 -42.16 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755026456.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.826 kcal (2) G-P(sol) polarization free energy of solvation -32.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.02 seconds