Wall clock time and date at job start Wed Apr 1 2020 05:08:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47025 * 2 1 4 4 C 1.52996 * 109.47187 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.47394 * 54.99489 * 4 3 2 6 6 C 1.50703 * 109.47474 * 175.00038 * 4 3 2 7 7 O 1.21279 * 119.99784 * 34.98993 * 6 4 3 8 8 N 1.34768 * 120.00046 * 215.00032 * 6 4 3 9 9 C 1.46498 * 120.00333 * 179.97438 * 8 6 4 10 10 H 1.09003 * 110.21230 * 34.99466 * 9 8 6 11 11 C 1.50117 * 110.25487 * 156.92959 * 9 8 6 12 12 C 1.54634 * 110.93364 * 216.54949 * 11 9 8 13 13 C 1.54905 * 110.18740 * 321.33575 * 12 11 9 14 14 N 1.43434 * 116.07875 * 318.52958 * 13 12 11 15 15 C 1.36940 * 120.53634 * 271.59019 * 14 13 12 16 16 H 1.07997 * 120.00082 * 336.68295 * 15 14 13 17 17 C 1.38814 * 120.00069 * 156.68623 * 15 14 13 18 18 N 1.31622 * 119.99801 * 340.40307 * 17 15 14 19 19 Si 1.86797 * 119.99966 * 160.39857 * 17 15 14 20 20 H 1.48498 * 109.46875 * 90.00332 * 19 17 15 21 21 H 1.48504 * 109.47330 * 210.00257 * 19 17 15 22 22 H 1.48503 * 109.47263 * 330.00221 * 19 17 15 23 23 C 1.50171 * 118.92716 * 91.56487 * 14 13 12 24 24 C 1.46237 * 107.53173 * 289.59015 * 23 14 13 25 25 S 1.81406 * 109.46711 * 294.99463 * 4 3 2 26 26 N 1.65594 * 104.45057 * 300.00333 * 25 4 3 27 27 O 1.42104 * 110.53974 * 51.63070 * 25 4 3 28 28 O 1.42099 * 110.54185 * 188.37510 * 25 4 3 29 29 H 1.08996 * 109.47238 * 60.00305 * 1 2 3 30 30 H 1.09000 * 109.47076 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47033 * 300.00272 * 1 2 3 32 32 H 1.08997 * 109.47301 * 240.00072 * 2 1 3 33 33 H 1.08996 * 109.47238 * 119.99695 * 2 1 3 34 34 H 1.08995 * 109.47173 * 59.99376 * 3 2 1 35 35 H 1.09006 * 109.46804 * 300.00064 * 3 2 1 36 36 H 0.97000 * 120.00105 * 359.97438 * 8 6 4 37 37 H 1.09005 * 109.20848 * 336.99961 * 11 9 8 38 38 H 1.09002 * 109.20960 * 96.31398 * 11 9 8 39 39 H 1.08999 * 109.42692 * 201.05880 * 12 11 9 40 40 H 1.08996 * 109.13560 * 81.42888 * 12 11 9 41 41 H 1.08999 * 108.15933 * 196.81174 * 13 12 11 42 42 H 1.08995 * 107.99992 * 80.12084 * 13 12 11 43 43 H 0.97003 * 119.99299 * 179.97438 * 18 17 15 44 44 H 1.08995 * 109.84472 * 170.08541 * 23 14 13 45 45 H 1.08996 * 109.89939 * 49.13070 * 23 14 13 46 46 H 1.09005 * 108.52618 * 297.16523 * 24 23 14 47 47 H 1.09006 * 108.52010 * 179.64810 * 24 23 14 48 48 H 0.96995 * 120.00413 * 359.97438 * 26 25 4 49 49 H 0.96999 * 119.99670 * 180.02562 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 1 3.9330 0.8532 -0.8426 6 6 4.0723 2.8580 -0.1245 7 8 3.4634 3.7657 0.4011 8 7 5.1980 3.1152 -0.8194 9 6 5.6861 4.4912 -0.9403 10 1 5.4819 5.0451 -0.0239 11 6 7.1583 4.4965 -1.2335 12 6 7.8602 5.6731 -0.5164 13 6 6.9618 6.9344 -0.5538 14 7 6.2834 7.1888 -1.7917 15 6 6.8847 7.9274 -2.7757 16 1 7.6706 8.6240 -2.5240 17 6 6.4840 7.7807 -4.0966 18 7 5.8306 6.7009 -4.4701 19 14 6.8719 9.1160 -5.3440 20 1 8.1883 8.8386 -5.9727 21 1 5.8183 9.1371 -6.3904 22 1 6.9174 10.4337 -4.6607 23 6 4.9033 6.6316 -1.9915 24 6 5.0297 5.1814 -2.1315 25 16 4.1752 0.7197 1.5492 26 7 3.5574 1.7006 2.7317 27 8 3.5627 -0.5409 1.7840 28 8 5.5826 0.8821 1.6589 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 1.6766 1.9564 0.8899 35 1 1.6766 1.9564 -0.8900 36 1 5.6851 2.3892 -1.2396 37 1 7.5950 3.5572 -0.8940 38 1 7.3096 4.5937 -2.3085 39 1 8.8061 5.8883 -1.0135 40 1 8.0517 5.3966 0.5204 41 1 7.5820 7.8003 -0.3222 42 1 6.2116 6.8371 0.2309 43 1 5.5503 6.5986 -5.3931 44 1 4.4610 7.0533 -2.8941 45 1 4.2796 6.8672 -1.1292 46 1 5.6203 4.9697 -3.0229 47 1 4.0346 4.7590 -2.2714 48 1 3.0066 2.4620 2.4915 49 1 3.7469 1.5141 3.6645 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755026456.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:08:58 Heat of formation + Delta-G solvation = -113.232578 kcal Electronic energy + Delta-G solvation = -30757.141277 eV Core-core repulsion = 26652.995221 eV Total energy + Delta-G solvation = -4104.146056 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.36385 -39.44575 -38.45596 -37.19450 -36.57416 -36.16455 -34.28651 -34.02267 -32.86157 -32.43757 -31.40033 -27.98367 -26.38289 -25.08074 -24.92091 -22.39140 -22.09801 -21.67683 -20.92483 -20.45738 -19.11148 -18.79135 -18.57757 -17.81191 -17.45090 -16.82565 -16.81688 -16.74349 -15.81608 -15.72195 -15.56924 -15.39314 -15.22414 -15.02400 -14.78774 -14.40634 -13.88499 -13.64585 -13.54315 -13.49241 -13.30460 -13.29128 -13.23723 -13.15975 -13.03719 -12.64210 -12.58619 -12.46923 -12.10396 -12.00344 -11.93721 -11.86060 -11.73248 -11.67025 -11.33575 -11.26281 -11.19661 -11.02695 -10.94326 -10.51139 -10.01398 -8.65508 -7.81538 -5.21526 -1.04062 1.37742 1.47788 1.51496 1.59207 1.65150 2.00126 2.42794 2.55647 2.93176 3.31896 3.32989 3.60115 3.67283 3.85119 4.00504 4.09246 4.13813 4.21496 4.26789 4.53777 4.56612 4.61898 4.68668 4.70894 4.86738 4.88053 4.95262 4.96460 5.00588 5.17962 5.19262 5.24820 5.26271 5.30775 5.34952 5.37706 5.51440 5.52907 5.62591 5.65375 5.70448 6.08656 6.25586 6.38805 6.43369 7.01598 7.18825 7.91799 8.43251 9.23113 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.018633 B = 0.002952 C = 0.002706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.358218 B = 9482.436010 C =10345.363892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.168 4.168 3 C -0.089 4.089 4 C -0.605 4.605 5 H 0.192 0.808 6 C 0.527 3.473 7 O -0.547 6.547 8 N -0.701 5.701 9 C 0.158 3.842 10 H 0.079 0.921 11 C -0.109 4.109 12 C -0.134 4.134 13 C 0.147 3.853 14 N -0.601 5.601 15 C -0.258 4.258 16 H 0.063 0.937 17 C -0.041 4.041 18 N -0.916 5.916 19 Si 0.956 3.044 20 H -0.288 1.288 21 H -0.295 1.295 22 H -0.279 1.279 23 C 0.173 3.827 24 C -0.117 4.117 25 S 2.647 3.353 26 N -1.240 6.240 27 O -0.960 6.960 28 O -0.984 6.984 29 H 0.056 0.944 30 H 0.064 0.936 31 H 0.059 0.941 32 H 0.079 0.921 33 H 0.099 0.901 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.412 0.588 37 H 0.073 0.927 38 H 0.051 0.949 39 H 0.050 0.950 40 H 0.075 0.925 41 H 0.033 0.967 42 H 0.038 0.962 43 H 0.247 0.753 44 H 0.060 0.940 45 H 0.013 0.987 46 H 0.078 0.922 47 H 0.026 0.974 48 H 0.424 0.576 49 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.108 -15.191 11.140 20.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.206 4.206 3 C -0.127 4.127 4 C -0.715 4.715 5 H 0.209 0.791 6 C 0.310 3.690 7 O -0.425 6.425 8 N -0.351 5.351 9 C 0.054 3.946 10 H 0.097 0.903 11 C -0.147 4.147 12 C -0.175 4.175 13 C 0.019 3.981 14 N -0.323 5.323 15 C -0.388 4.388 16 H 0.081 0.919 17 C -0.237 4.237 18 N -0.562 5.562 19 Si 0.785 3.215 20 H -0.215 1.215 21 H -0.221 1.221 22 H -0.204 1.204 23 C 0.049 3.951 24 C -0.157 4.157 25 S 2.736 3.264 26 N -0.919 5.919 27 O -0.949 6.949 28 O -0.973 6.973 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.097 0.903 33 H 0.117 0.883 34 H 0.108 0.892 35 H 0.105 0.895 36 H 0.249 0.751 37 H 0.092 0.908 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.093 0.907 41 H 0.051 0.949 42 H 0.056 0.944 43 H 0.056 0.944 44 H 0.078 0.922 45 H 0.031 0.969 46 H 0.096 0.904 47 H 0.045 0.955 48 H 0.254 0.746 49 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -6.953 -15.440 11.327 20.372 hybrid contribution 0.045 1.177 -1.539 1.938 sum -6.908 -14.264 9.787 18.627 Atomic orbital electron populations 1.21729 0.94348 1.02515 1.02274 1.22255 0.98037 0.94710 1.05567 1.21371 0.85710 0.99659 1.05984 1.30619 1.10247 1.04825 1.25839 0.79110 1.19543 0.80892 0.89057 0.79475 1.90728 1.56831 1.46576 1.48365 1.46156 1.25916 1.10355 1.52680 1.20221 0.94452 0.81099 0.98823 0.90281 1.21548 0.93293 0.98912 1.00946 1.22705 0.98935 0.96211 0.99633 1.20577 0.94371 0.95210 0.87919 1.44346 1.12498 1.60532 1.14903 1.19392 1.17847 1.14522 0.87085 0.91947 1.25473 1.01659 0.98437 0.98129 1.70101 1.44270 1.25670 1.16180 0.85463 0.76774 0.80155 0.79065 1.21549 1.22148 1.20420 1.19938 0.85008 0.92570 0.97564 1.21102 0.98926 0.97080 0.98581 1.03799 0.73430 0.73787 0.75404 1.52807 1.70641 1.46577 1.21914 1.93548 1.77111 1.41119 1.83145 1.93610 1.32301 1.86414 1.85008 0.92519 0.91662 0.92190 0.90279 0.88288 0.89218 0.89478 0.75127 0.90809 0.93024 0.93128 0.90665 0.94878 0.94396 0.94402 0.92199 0.96867 0.90394 0.95500 0.74590 0.73928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.91 71.98 0.71 -1.29 16 2 C -0.17 -2.46 5.65 30.60 0.17 -2.28 16 3 C -0.09 -1.43 4.21 30.59 0.13 -1.30 16 4 C -0.60 -10.58 2.75 29.85 0.08 -10.49 16 5 H 0.19 2.05 8.11 -2.39 -0.02 2.03 16 6 C 0.53 13.60 6.51 87.66 0.57 14.17 16 7 O -0.55 -17.05 15.19 -3.03 -0.05 -17.09 16 8 N -0.70 -19.20 4.98 -447.74 -2.23 -21.43 16 9 C 0.16 5.51 2.19 43.91 0.10 5.61 16 10 H 0.08 2.96 5.77 -2.39 -0.01 2.95 16 11 C -0.11 -3.77 5.29 30.22 0.16 -3.61 16 12 C -0.13 -4.68 6.40 31.80 0.20 -4.48 16 13 C 0.15 5.97 5.18 87.60 0.45 6.43 16 14 N -0.60 -28.99 2.60 -707.84 -1.84 -30.84 16 15 C -0.26 -13.71 9.63 84.03 0.81 -12.91 16 16 H 0.06 3.30 7.89 -2.91 -0.02 3.28 16 17 C -0.04 -2.19 4.91 84.86 0.42 -1.77 16 18 N -0.92 -50.04 9.43 21.65 0.20 -49.83 16 19 Si 0.96 43.85 29.60 68.60 2.03 45.88 16 20 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 21 H -0.30 -13.63 7.11 99.48 0.71 -12.93 16 22 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 23 C 0.17 8.18 5.24 83.58 0.44 8.62 16 24 C -0.12 -4.93 4.73 28.36 0.13 -4.79 16 25 S 2.65 50.43 5.46 -56.49 -0.31 50.12 16 26 N -1.24 -19.58 9.13 37.02 0.34 -19.24 16 27 O -0.96 -20.58 14.89 -127.65 -1.90 -22.48 16 28 O -0.98 -25.63 18.01 -127.65 -2.30 -27.93 16 29 H 0.06 0.72 8.14 -2.39 -0.02 0.71 16 30 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.10 1.64 4.90 -2.39 -0.01 1.62 16 34 H 0.09 1.35 6.96 -2.39 -0.02 1.34 16 35 H 0.09 1.51 8.14 -2.38 -0.02 1.49 16 36 H 0.41 8.94 8.46 -92.71 -0.78 8.15 16 37 H 0.07 2.13 7.83 -2.38 -0.02 2.11 16 38 H 0.05 2.13 6.84 -2.39 -0.02 2.11 16 39 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 40 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 41 H 0.03 1.33 7.99 -2.39 -0.02 1.31 16 42 H 0.04 1.46 6.88 -2.39 -0.02 1.44 16 43 H 0.25 13.27 8.31 -92.71 -0.77 12.50 16 44 H 0.06 3.20 6.05 -2.39 -0.01 3.18 16 45 H 0.01 0.61 8.13 -2.39 -0.02 0.59 16 46 H 0.08 3.74 5.30 -2.38 -0.01 3.73 16 47 H 0.03 1.11 7.96 -2.38 -0.02 1.09 16 48 H 0.42 6.47 6.95 -96.75 -0.67 5.80 16 49 H 0.43 5.14 8.96 -96.75 -0.87 4.27 16 Total: -1.00 -68.99 383.51 -3.00 -71.99 By element: Atomic # 1 Polarization: 30.28 SS G_CDS: -1.33 Total: 28.94 kcal Atomic # 6 Polarization: -12.48 SS G_CDS: 4.38 Total: -8.10 kcal Atomic # 7 Polarization: -117.81 SS G_CDS: -3.53 Total: -121.34 kcal Atomic # 8 Polarization: -63.25 SS G_CDS: -4.25 Total: -67.50 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Atomic # 16 Polarization: 50.43 SS G_CDS: -0.31 Total: 50.12 kcal Total: -68.99 -3.00 -71.99 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755026456.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.242 kcal (2) G-P(sol) polarization free energy of solvation -68.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds