Wall clock time and date at job start Wed Apr 1 2020 05:08:58
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.53005 * 109.47025 * 2 1
4 4 C 1.52996 * 109.47187 * 180.02562 * 3 2 1
5 5 H 1.09000 * 109.47394 * 54.99489 * 4 3 2
6 6 C 1.50703 * 109.47474 * 175.00038 * 4 3 2
7 7 O 1.21279 * 119.99784 * 34.98993 * 6 4 3
8 8 N 1.34768 * 120.00046 * 215.00032 * 6 4 3
9 9 C 1.46498 * 120.00333 * 179.97438 * 8 6 4
10 10 H 1.09003 * 110.21230 * 34.99466 * 9 8 6
11 11 C 1.50117 * 110.25487 * 156.92959 * 9 8 6
12 12 C 1.54634 * 110.93364 * 216.54949 * 11 9 8
13 13 C 1.54905 * 110.18740 * 321.33575 * 12 11 9
14 14 N 1.43434 * 116.07875 * 318.52958 * 13 12 11
15 15 C 1.36940 * 120.53634 * 271.59019 * 14 13 12
16 16 H 1.07997 * 120.00082 * 336.68295 * 15 14 13
17 17 C 1.38814 * 120.00069 * 156.68623 * 15 14 13
18 18 N 1.31622 * 119.99801 * 340.40307 * 17 15 14
19 19 Si 1.86797 * 119.99966 * 160.39857 * 17 15 14
20 20 H 1.48498 * 109.46875 * 90.00332 * 19 17 15
21 21 H 1.48504 * 109.47330 * 210.00257 * 19 17 15
22 22 H 1.48503 * 109.47263 * 330.00221 * 19 17 15
23 23 C 1.50171 * 118.92716 * 91.56487 * 14 13 12
24 24 C 1.46237 * 107.53173 * 289.59015 * 23 14 13
25 25 S 1.81406 * 109.46711 * 294.99463 * 4 3 2
26 26 N 1.65594 * 104.45057 * 300.00333 * 25 4 3
27 27 O 1.42104 * 110.53974 * 51.63070 * 25 4 3
28 28 O 1.42099 * 110.54185 * 188.37510 * 25 4 3
29 29 H 1.08996 * 109.47238 * 60.00305 * 1 2 3
30 30 H 1.09000 * 109.47076 * 180.02562 * 1 2 3
31 31 H 1.09003 * 109.47033 * 300.00272 * 1 2 3
32 32 H 1.08997 * 109.47301 * 240.00072 * 2 1 3
33 33 H 1.08996 * 109.47238 * 119.99695 * 2 1 3
34 34 H 1.08995 * 109.47173 * 59.99376 * 3 2 1
35 35 H 1.09006 * 109.46804 * 300.00064 * 3 2 1
36 36 H 0.97000 * 120.00105 * 359.97438 * 8 6 4
37 37 H 1.09005 * 109.20848 * 336.99961 * 11 9 8
38 38 H 1.09002 * 109.20960 * 96.31398 * 11 9 8
39 39 H 1.08999 * 109.42692 * 201.05880 * 12 11 9
40 40 H 1.08996 * 109.13560 * 81.42888 * 12 11 9
41 41 H 1.08999 * 108.15933 * 196.81174 * 13 12 11
42 42 H 1.08995 * 107.99992 * 80.12084 * 13 12 11
43 43 H 0.97003 * 119.99299 * 179.97438 * 18 17 15
44 44 H 1.08995 * 109.84472 * 170.08541 * 23 14 13
45 45 H 1.08996 * 109.89939 * 49.13070 * 23 14 13
46 46 H 1.09005 * 108.52618 * 297.16523 * 24 23 14
47 47 H 1.09006 * 108.52010 * 179.64810 * 24 23 14
48 48 H 0.96995 * 120.00413 * 359.97438 * 26 25 4
49 49 H 0.96999 * 119.99670 * 180.02562 * 26 25 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4426 0.0000
4 6 3.5700 1.4426 -0.0006
5 1 3.9330 0.8532 -0.8426
6 6 4.0723 2.8580 -0.1245
7 8 3.4634 3.7657 0.4011
8 7 5.1980 3.1152 -0.8194
9 6 5.6861 4.4912 -0.9403
10 1 5.4819 5.0451 -0.0239
11 6 7.1583 4.4965 -1.2335
12 6 7.8602 5.6731 -0.5164
13 6 6.9618 6.9344 -0.5538
14 7 6.2834 7.1888 -1.7917
15 6 6.8847 7.9274 -2.7757
16 1 7.6706 8.6240 -2.5240
17 6 6.4840 7.7807 -4.0966
18 7 5.8306 6.7009 -4.4701
19 14 6.8719 9.1160 -5.3440
20 1 8.1883 8.8386 -5.9727
21 1 5.8183 9.1371 -6.3904
22 1 6.9174 10.4337 -4.6607
23 6 4.9033 6.6316 -1.9915
24 6 5.0297 5.1814 -2.1315
25 16 4.1752 0.7197 1.5492
26 7 3.5574 1.7006 2.7317
27 8 3.5627 -0.5409 1.7840
28 8 5.5826 0.8821 1.6589
29 1 -0.3633 0.5138 -0.8900
30 1 -0.3633 -1.0277 0.0005
31 1 -0.3633 0.5139 0.8900
32 1 1.8934 -0.5138 -0.8899
33 1 1.8934 -0.5138 0.8900
34 1 1.6766 1.9564 0.8899
35 1 1.6766 1.9564 -0.8900
36 1 5.6851 2.3892 -1.2396
37 1 7.5950 3.5572 -0.8940
38 1 7.3096 4.5937 -2.3085
39 1 8.8061 5.8883 -1.0135
40 1 8.0517 5.3966 0.5204
41 1 7.5820 7.8003 -0.3222
42 1 6.2116 6.8371 0.2309
43 1 5.5503 6.5986 -5.3931
44 1 4.4610 7.0533 -2.8941
45 1 4.2796 6.8672 -1.1292
46 1 5.6203 4.9697 -3.0229
47 1 4.0346 4.7590 -2.2714
48 1 3.0066 2.4620 2.4915
49 1 3.7469 1.5141 3.6645
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001755026456.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:08:58
Heat of formation + Delta-G solvation = -113.232578 kcal
Electronic energy + Delta-G solvation = -30757.141277 eV
Core-core repulsion = 26652.995221 eV
Total energy + Delta-G solvation = -4104.146056 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 347.171 amu
Computer time = 1.05 seconds
Orbital eigenvalues (eV)
-41.36385 -39.44575 -38.45596 -37.19450 -36.57416 -36.16455 -34.28651 -34.02267
-32.86157 -32.43757 -31.40033 -27.98367 -26.38289 -25.08074 -24.92091 -22.39140
-22.09801 -21.67683 -20.92483 -20.45738 -19.11148 -18.79135 -18.57757 -17.81191
-17.45090 -16.82565 -16.81688 -16.74349 -15.81608 -15.72195 -15.56924 -15.39314
-15.22414 -15.02400 -14.78774 -14.40634 -13.88499 -13.64585 -13.54315 -13.49241
-13.30460 -13.29128 -13.23723 -13.15975 -13.03719 -12.64210 -12.58619 -12.46923
-12.10396 -12.00344 -11.93721 -11.86060 -11.73248 -11.67025 -11.33575 -11.26281
-11.19661 -11.02695 -10.94326 -10.51139 -10.01398 -8.65508 -7.81538 -5.21526
-1.04062 1.37742 1.47788 1.51496 1.59207 1.65150 2.00126 2.42794
2.55647 2.93176 3.31896 3.32989 3.60115 3.67283 3.85119 4.00504
4.09246 4.13813 4.21496 4.26789 4.53777 4.56612 4.61898 4.68668
4.70894 4.86738 4.88053 4.95262 4.96460 5.00588 5.17962 5.19262
5.24820 5.26271 5.30775 5.34952 5.37706 5.51440 5.52907 5.62591
5.65375 5.70448 6.08656 6.25586 6.38805 6.43369 7.01598 7.18825
7.91799 8.43251 9.23113
Molecular weight = 347.17amu
Principal moments of inertia in cm(-1)
A = 0.018633 B = 0.002952 C = 0.002706
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1502.358218 B = 9482.436010 C =10345.363892
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.151 4.151
2 C -0.168 4.168
3 C -0.089 4.089
4 C -0.605 4.605
5 H 0.192 0.808
6 C 0.527 3.473
7 O -0.547 6.547
8 N -0.701 5.701
9 C 0.158 3.842
10 H 0.079 0.921
11 C -0.109 4.109
12 C -0.134 4.134
13 C 0.147 3.853
14 N -0.601 5.601
15 C -0.258 4.258
16 H 0.063 0.937
17 C -0.041 4.041
18 N -0.916 5.916
19 Si 0.956 3.044
20 H -0.288 1.288
21 H -0.295 1.295
22 H -0.279 1.279
23 C 0.173 3.827
24 C -0.117 4.117
25 S 2.647 3.353
26 N -1.240 6.240
27 O -0.960 6.960
28 O -0.984 6.984
29 H 0.056 0.944
30 H 0.064 0.936
31 H 0.059 0.941
32 H 0.079 0.921
33 H 0.099 0.901
34 H 0.089 0.911
35 H 0.087 0.913
36 H 0.412 0.588
37 H 0.073 0.927
38 H 0.051 0.949
39 H 0.050 0.950
40 H 0.075 0.925
41 H 0.033 0.967
42 H 0.038 0.962
43 H 0.247 0.753
44 H 0.060 0.940
45 H 0.013 0.987
46 H 0.078 0.922
47 H 0.026 0.974
48 H 0.424 0.576
49 H 0.428 0.572
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.108 -15.191 11.140 20.134
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.209 4.209
2 C -0.206 4.206
3 C -0.127 4.127
4 C -0.715 4.715
5 H 0.209 0.791
6 C 0.310 3.690
7 O -0.425 6.425
8 N -0.351 5.351
9 C 0.054 3.946
10 H 0.097 0.903
11 C -0.147 4.147
12 C -0.175 4.175
13 C 0.019 3.981
14 N -0.323 5.323
15 C -0.388 4.388
16 H 0.081 0.919
17 C -0.237 4.237
18 N -0.562 5.562
19 Si 0.785 3.215
20 H -0.215 1.215
21 H -0.221 1.221
22 H -0.204 1.204
23 C 0.049 3.951
24 C -0.157 4.157
25 S 2.736 3.264
26 N -0.919 5.919
27 O -0.949 6.949
28 O -0.973 6.973
29 H 0.075 0.925
30 H 0.083 0.917
31 H 0.078 0.922
32 H 0.097 0.903
33 H 0.117 0.883
34 H 0.108 0.892
35 H 0.105 0.895
36 H 0.249 0.751
37 H 0.092 0.908
38 H 0.070 0.930
39 H 0.069 0.931
40 H 0.093 0.907
41 H 0.051 0.949
42 H 0.056 0.944
43 H 0.056 0.944
44 H 0.078 0.922
45 H 0.031 0.969
46 H 0.096 0.904
47 H 0.045 0.955
48 H 0.254 0.746
49 H 0.261 0.739
Dipole moment (debyes) X Y Z Total
from point charges -6.953 -15.440 11.327 20.372
hybrid contribution 0.045 1.177 -1.539 1.938
sum -6.908 -14.264 9.787 18.627
Atomic orbital electron populations
1.21729 0.94348 1.02515 1.02274 1.22255 0.98037 0.94710 1.05567
1.21371 0.85710 0.99659 1.05984 1.30619 1.10247 1.04825 1.25839
0.79110 1.19543 0.80892 0.89057 0.79475 1.90728 1.56831 1.46576
1.48365 1.46156 1.25916 1.10355 1.52680 1.20221 0.94452 0.81099
0.98823 0.90281 1.21548 0.93293 0.98912 1.00946 1.22705 0.98935
0.96211 0.99633 1.20577 0.94371 0.95210 0.87919 1.44346 1.12498
1.60532 1.14903 1.19392 1.17847 1.14522 0.87085 0.91947 1.25473
1.01659 0.98437 0.98129 1.70101 1.44270 1.25670 1.16180 0.85463
0.76774 0.80155 0.79065 1.21549 1.22148 1.20420 1.19938 0.85008
0.92570 0.97564 1.21102 0.98926 0.97080 0.98581 1.03799 0.73430
0.73787 0.75404 1.52807 1.70641 1.46577 1.21914 1.93548 1.77111
1.41119 1.83145 1.93610 1.32301 1.86414 1.85008 0.92519 0.91662
0.92190 0.90279 0.88288 0.89218 0.89478 0.75127 0.90809 0.93024
0.93128 0.90665 0.94878 0.94396 0.94402 0.92199 0.96867 0.90394
0.95500 0.74590 0.73928
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.00 9.91 71.98 0.71 -1.29 16
2 C -0.17 -2.46 5.65 30.60 0.17 -2.28 16
3 C -0.09 -1.43 4.21 30.59 0.13 -1.30 16
4 C -0.60 -10.58 2.75 29.85 0.08 -10.49 16
5 H 0.19 2.05 8.11 -2.39 -0.02 2.03 16
6 C 0.53 13.60 6.51 87.66 0.57 14.17 16
7 O -0.55 -17.05 15.19 -3.03 -0.05 -17.09 16
8 N -0.70 -19.20 4.98 -447.74 -2.23 -21.43 16
9 C 0.16 5.51 2.19 43.91 0.10 5.61 16
10 H 0.08 2.96 5.77 -2.39 -0.01 2.95 16
11 C -0.11 -3.77 5.29 30.22 0.16 -3.61 16
12 C -0.13 -4.68 6.40 31.80 0.20 -4.48 16
13 C 0.15 5.97 5.18 87.60 0.45 6.43 16
14 N -0.60 -28.99 2.60 -707.84 -1.84 -30.84 16
15 C -0.26 -13.71 9.63 84.03 0.81 -12.91 16
16 H 0.06 3.30 7.89 -2.91 -0.02 3.28 16
17 C -0.04 -2.19 4.91 84.86 0.42 -1.77 16
18 N -0.92 -50.04 9.43 21.65 0.20 -49.83 16
19 Si 0.96 43.85 29.60 68.60 2.03 45.88 16
20 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16
21 H -0.30 -13.63 7.11 99.48 0.71 -12.93 16
22 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16
23 C 0.17 8.18 5.24 83.58 0.44 8.62 16
24 C -0.12 -4.93 4.73 28.36 0.13 -4.79 16
25 S 2.65 50.43 5.46 -56.49 -0.31 50.12 16
26 N -1.24 -19.58 9.13 37.02 0.34 -19.24 16
27 O -0.96 -20.58 14.89 -127.65 -1.90 -22.48 16
28 O -0.98 -25.63 18.01 -127.65 -2.30 -27.93 16
29 H 0.06 0.72 8.14 -2.39 -0.02 0.71 16
30 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16
31 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16
32 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16
33 H 0.10 1.64 4.90 -2.39 -0.01 1.62 16
34 H 0.09 1.35 6.96 -2.39 -0.02 1.34 16
35 H 0.09 1.51 8.14 -2.38 -0.02 1.49 16
36 H 0.41 8.94 8.46 -92.71 -0.78 8.15 16
37 H 0.07 2.13 7.83 -2.38 -0.02 2.11 16
38 H 0.05 2.13 6.84 -2.39 -0.02 2.11 16
39 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16
40 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16
41 H 0.03 1.33 7.99 -2.39 -0.02 1.31 16
42 H 0.04 1.46 6.88 -2.39 -0.02 1.44 16
43 H 0.25 13.27 8.31 -92.71 -0.77 12.50 16
44 H 0.06 3.20 6.05 -2.39 -0.01 3.18 16
45 H 0.01 0.61 8.13 -2.39 -0.02 0.59 16
46 H 0.08 3.74 5.30 -2.38 -0.01 3.73 16
47 H 0.03 1.11 7.96 -2.38 -0.02 1.09 16
48 H 0.42 6.47 6.95 -96.75 -0.67 5.80 16
49 H 0.43 5.14 8.96 -96.75 -0.87 4.27 16
Total: -1.00 -68.99 383.51 -3.00 -71.99
By element:
Atomic # 1 Polarization: 30.28 SS G_CDS: -1.33 Total: 28.94 kcal
Atomic # 6 Polarization: -12.48 SS G_CDS: 4.38 Total: -8.10 kcal
Atomic # 7 Polarization: -117.81 SS G_CDS: -3.53 Total: -121.34 kcal
Atomic # 8 Polarization: -63.25 SS G_CDS: -4.25 Total: -67.50 kcal
Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal
Atomic # 16 Polarization: 50.43 SS G_CDS: -0.31 Total: 50.12 kcal
Total: -68.99 -3.00 -71.99 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001755026456.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -41.242 kcal
(2) G-P(sol) polarization free energy of solvation -68.986 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.228 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.005 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.990 kcal
(6) G-S(sol) free energy of system = (1) + (5) -113.233 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.05 seconds