Wall clock time and date at job start Wed Apr 1 2020 05:10:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46503 * 119.99848 * 2 1 4 4 C 1.53000 * 109.46916 * 269.99719 * 3 2 1 5 5 C 1.53000 * 109.47527 * 300.00211 * 4 3 2 6 6 C 1.52998 * 109.46930 * 60.00216 * 4 3 2 7 7 C 1.52997 * 109.47102 * 179.97438 * 4 3 2 8 8 N 1.46507 * 109.47038 * 180.02562 * 7 4 3 9 9 C 1.36934 * 119.99948 * 180.02562 * 8 7 4 10 10 H 1.08004 * 119.99907 * 359.97438 * 9 8 7 11 11 C 1.38813 * 120.00062 * 180.02562 * 9 8 7 12 12 N 1.31616 * 120.00140 * 180.02562 * 11 9 8 13 13 Si 1.86799 * 119.99830 * 359.97438 * 11 9 8 14 14 H 1.48500 * 109.46993 * 90.00690 * 13 11 9 15 15 H 1.48502 * 109.47067 * 210.00215 * 13 11 9 16 16 H 1.48499 * 109.47372 * 330.00473 * 13 11 9 17 17 C 1.34776 * 120.00230 * 179.97438 * 2 1 3 18 18 O 1.21281 * 120.00161 * 180.02562 * 17 2 1 19 19 C 1.50700 * 119.99755 * 359.97438 * 17 2 1 20 20 N 1.46505 * 109.46909 * 179.97438 * 19 17 2 21 21 C 1.47068 * 126.29884 * 85.00553 * 20 19 17 22 22 C 1.54066 * 110.04916 * 208.96145 * 21 20 19 23 23 C 1.55602 * 104.29476 * 314.83004 * 22 21 20 24 24 S 1.66842 * 126.22232 * 264.93402 * 20 19 17 25 25 O 1.42107 * 105.14140 * 61.13608 * 24 20 19 26 26 O 1.42098 * 105.27888 * 291.49366 * 24 20 19 27 27 H 1.09004 * 109.47114 * 269.99877 * 1 2 3 28 28 H 1.08997 * 109.47616 * 29.99947 * 1 2 3 29 29 H 1.08994 * 109.47061 * 150.00422 * 1 2 3 30 30 H 1.08996 * 109.47037 * 29.99712 * 3 2 1 31 31 H 1.08998 * 109.47198 * 150.00467 * 3 2 1 32 32 H 1.09004 * 109.47300 * 59.99772 * 5 4 3 33 33 H 1.08998 * 109.47411 * 179.97438 * 5 4 3 34 34 H 1.08999 * 109.46893 * 300.00347 * 5 4 3 35 35 H 1.08996 * 109.47444 * 59.99750 * 6 4 3 36 36 H 1.08998 * 109.47380 * 180.02562 * 6 4 3 37 37 H 1.09004 * 109.47457 * 299.99734 * 6 4 3 38 38 H 1.08996 * 109.47485 * 299.99938 * 7 4 3 39 39 H 1.08998 * 109.47076 * 60.00709 * 7 4 3 40 40 H 0.96996 * 119.99867 * 359.97438 * 8 7 4 41 41 H 0.96996 * 120.00508 * 179.97438 * 12 11 9 42 42 H 1.08999 * 109.46956 * 60.00354 * 19 17 2 43 43 H 1.08996 * 109.47713 * 300.00016 * 19 17 2 44 44 H 1.09002 * 109.35873 * 88.81413 * 21 20 19 45 45 H 1.09000 * 109.35301 * 329.10530 * 21 20 19 46 46 H 1.08992 * 110.46854 * 73.53536 * 22 21 20 47 47 H 1.09002 * 110.46579 * 196.12669 * 22 21 20 48 48 H 1.08998 * 111.16728 * 155.79272 * 23 22 21 49 49 H 1.09005 * 111.16478 * 280.05459 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7104 -1.4425 5 6 3.2794 0.6441 -2.1638 6 6 1.1156 1.8933 -2.1637 7 6 3.2169 3.0357 -1.4426 8 7 3.4605 3.4589 -2.8239 9 6 4.1336 4.6248 -3.0741 10 1 4.4844 5.2327 -2.2532 11 6 4.3640 5.0261 -4.3829 12 7 5.0113 6.1465 -4.6235 13 14 3.7565 3.9750 -5.8026 14 1 2.3829 4.3962 -6.1780 15 1 4.6620 4.1452 -6.9673 16 1 3.7418 2.5482 -5.3914 17 6 2.1389 -1.1672 0.0005 18 8 3.3517 -1.1672 0.0010 19 6 1.3854 -2.4723 0.0017 20 7 2.3375 -3.5858 0.0014 21 6 2.9826 -4.1799 1.1820 22 6 4.3579 -4.7581 0.7974 23 6 4.0931 -5.5310 -0.5268 24 16 2.8868 -4.4130 -1.3393 25 8 3.5447 -3.4360 -2.1344 26 8 1.7611 -5.1334 -1.8220 27 1 -0.3633 0.0000 1.0277 28 1 -0.3634 0.8899 -0.5138 29 1 -0.3633 -0.8900 -0.5137 30 1 1.6084 2.0284 0.5138 31 1 3.1499 1.1385 0.5137 32 1 2.7344 -0.2999 -2.1638 33 1 3.4606 0.9585 -3.1916 34 1 4.2317 0.5138 -1.6499 35 1 0.5265 2.6529 -1.6500 36 1 1.2972 2.2074 -3.1915 37 1 0.5706 0.9493 -2.1638 38 1 2.6274 3.7952 -0.9290 39 1 4.1693 2.9058 -0.9287 40 1 3.1458 2.9127 -3.5611 41 1 5.1726 6.4267 -5.5379 42 1 0.7585 -2.5306 -0.8880 43 1 0.7591 -2.5295 0.8919 44 1 2.3524 -4.9777 1.5750 45 1 3.1136 -3.4137 1.9460 46 1 5.0764 -3.9552 0.6330 47 1 4.7153 -5.4381 1.5708 48 1 5.0044 -5.6232 -1.1177 49 1 3.6532 -6.5088 -0.3305 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755282506.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:10:29 Heat of formation + Delta-G solvation = -66.571565 kcal Electronic energy + Delta-G solvation = -30611.485299 eV Core-core repulsion = 26509.362616 eV Total energy + Delta-G solvation = -4102.122683 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 2.14 seconds Orbital eigenvalues (eV) -40.31020 -37.92760 -37.24614 -37.02618 -36.08459 -35.16580 -33.61254 -32.94558 -30.66143 -28.71940 -27.86492 -26.75930 -26.22588 -25.92152 -24.83601 -22.56008 -22.00790 -19.92847 -19.01485 -18.56015 -17.78173 -17.51014 -17.38355 -17.02435 -16.17888 -16.05227 -15.59348 -15.08228 -14.84503 -14.46840 -14.36869 -14.02107 -13.97908 -13.75579 -13.53464 -13.26859 -13.16149 -12.99814 -12.86646 -12.61148 -12.32847 -12.29728 -12.17843 -12.14416 -12.06767 -11.95415 -11.41479 -11.27988 -11.25953 -11.14482 -10.87393 -10.81291 -10.68576 -10.40102 -10.26908 -10.16914 -9.89317 -9.49725 -9.18164 -8.80713 -8.58239 -7.11880 -5.69041 -3.02709 -0.11957 2.07852 2.56980 2.95248 3.29379 3.43868 3.47712 3.48954 3.51560 3.90357 4.11089 4.34933 4.39297 4.49476 4.67224 4.77651 4.88211 4.92410 4.96739 5.04931 5.11053 5.12786 5.17098 5.27634 5.35570 5.41805 5.43632 5.47139 5.58960 5.68679 5.76829 5.90827 5.96187 5.98888 6.10374 6.21461 6.39525 6.48935 6.59496 6.68386 6.76556 6.86572 6.97388 7.32043 8.08480 8.16504 8.50770 9.30794 10.03627 10.24519 11.49807 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.015645 B = 0.002959 C = 0.002753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.242406 B = 9458.907304 C =10167.847062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.612 5.612 3 C 0.130 3.870 4 C -0.092 4.092 5 C -0.123 4.123 6 C -0.137 4.137 7 C 0.171 3.829 8 N -0.752 5.752 9 C -0.238 4.238 10 H 0.090 0.910 11 C 0.003 3.997 12 N -0.937 5.937 13 Si 0.880 3.120 14 H -0.285 1.285 15 H -0.291 1.291 16 H -0.276 1.276 17 C 0.484 3.516 18 O -0.507 6.507 19 C 0.142 3.858 20 N -0.976 5.976 21 C 0.085 3.915 22 C -0.124 4.124 23 C -0.598 4.598 24 S 2.566 3.434 25 O -0.934 6.934 26 O -0.960 6.960 27 H 0.057 0.943 28 H 0.082 0.918 29 H 0.068 0.932 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.044 0.956 33 H 0.050 0.950 34 H 0.059 0.941 35 H 0.053 0.947 36 H 0.058 0.942 37 H 0.048 0.952 38 H 0.025 0.975 39 H 0.027 0.973 40 H 0.362 0.638 41 H 0.258 0.742 42 H 0.105 0.895 43 H 0.108 0.892 44 H 0.075 0.925 45 H 0.093 0.907 46 H 0.100 0.900 47 H 0.109 0.891 48 H 0.141 0.859 49 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.264 -26.759 16.651 33.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.347 5.347 3 C 0.007 3.993 4 C -0.094 4.094 5 C -0.181 4.181 6 C -0.195 4.195 7 C 0.043 3.957 8 N -0.398 5.398 9 C -0.368 4.368 10 H 0.107 0.893 11 C -0.192 4.192 12 N -0.585 5.585 13 Si 0.711 3.289 14 H -0.211 1.211 15 H -0.217 1.217 16 H -0.202 1.202 17 C 0.269 3.731 18 O -0.381 6.381 19 C 0.014 3.986 20 N -0.816 5.816 21 C -0.041 4.041 22 C -0.164 4.164 23 C -0.729 4.729 24 S 2.661 3.339 25 O -0.923 6.923 26 O -0.950 6.950 27 H 0.075 0.925 28 H 0.101 0.899 29 H 0.086 0.914 30 H 0.095 0.905 31 H 0.103 0.897 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.079 0.921 35 H 0.072 0.928 36 H 0.077 0.923 37 H 0.067 0.933 38 H 0.043 0.957 39 H 0.045 0.955 40 H 0.196 0.804 41 H 0.068 0.932 42 H 0.123 0.877 43 H 0.126 0.874 44 H 0.093 0.907 45 H 0.112 0.888 46 H 0.118 0.882 47 H 0.127 0.873 48 H 0.160 0.840 49 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -9.839 -26.370 15.721 32.239 hybrid contribution -0.114 -0.764 -0.598 0.977 sum -9.953 -27.134 15.123 32.620 Atomic orbital electron populations 1.21998 0.79858 1.03844 1.01791 1.47830 1.06739 1.06237 1.73882 1.21508 0.97500 0.83542 0.96722 1.21201 0.96333 0.97079 0.94770 1.21722 0.99729 0.96458 1.00158 1.21906 0.96133 1.00195 1.01243 1.20546 0.96219 0.91184 0.87723 1.42745 1.69501 1.26002 1.01589 1.19077 1.27476 0.96771 0.93505 0.89268 1.24635 1.00612 0.97182 0.96812 1.69696 1.46387 1.23112 1.19345 0.86606 0.78431 0.80536 0.83373 1.21128 1.21719 1.20241 1.21193 0.88977 0.85616 0.77305 1.90737 1.13309 1.86787 1.47248 1.20871 0.89696 0.82921 1.05113 1.56856 1.57388 1.44734 1.22613 1.22024 0.92581 0.98892 0.90592 1.22634 0.97796 1.00288 0.95640 1.30838 1.17694 1.13729 1.10591 1.06637 0.76737 0.76577 0.73899 1.93704 1.76036 1.56274 1.66335 1.93615 1.49100 1.74160 1.78127 0.92478 0.89904 0.91379 0.90465 0.89664 0.93743 0.93063 0.92147 0.92771 0.92328 0.93306 0.95673 0.95521 0.80430 0.93168 0.87682 0.87362 0.90669 0.88840 0.88152 0.87287 0.84045 0.84256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.47 9.15 59.85 0.55 1.02 16 2 N -0.61 -6.63 2.40 -181.58 -0.44 -7.06 16 3 C 0.13 1.70 4.60 -4.04 -0.02 1.68 16 4 C -0.09 -1.52 0.60 -154.51 -0.09 -1.61 16 5 C -0.12 -2.33 6.97 37.16 0.26 -2.07 16 6 C -0.14 -2.07 7.05 37.16 0.26 -1.80 16 7 C 0.17 3.47 5.15 -4.04 -0.02 3.44 16 8 N -0.75 -18.76 4.81 -59.91 -0.29 -19.05 16 9 C -0.24 -7.02 10.47 -15.06 -0.16 -7.17 16 10 H 0.09 2.79 8.06 -52.48 -0.42 2.36 16 11 C 0.00 0.09 5.50 -17.43 -0.10 -0.01 16 12 N -0.94 -30.39 13.97 55.49 0.78 -29.62 16 13 Si 0.88 23.24 27.74 -169.99 -4.71 18.52 16 14 H -0.28 -7.36 7.11 56.52 0.40 -6.96 16 15 H -0.29 -7.74 7.11 56.52 0.40 -7.34 16 16 H -0.28 -7.03 6.52 56.52 0.37 -6.66 16 17 C 0.48 5.85 6.15 -10.99 -0.07 5.78 16 18 O -0.51 -8.02 14.20 5.56 0.08 -7.94 16 19 C 0.14 1.21 5.38 -5.19 -0.03 1.18 16 20 N -0.98 -8.59 2.80 -114.62 -0.32 -8.91 16 21 C 0.09 0.47 6.83 -3.18 -0.02 0.45 16 22 C -0.12 -0.61 6.79 -24.79 -0.17 -0.78 16 23 C -0.60 -3.22 7.51 38.54 0.29 -2.93 16 24 S 2.57 26.37 6.16 -107.50 -0.66 25.71 16 25 O -0.93 -14.30 18.14 -57.43 -1.04 -15.34 16 26 O -0.96 -12.14 18.14 -57.43 -1.04 -13.18 16 27 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.08 0.59 6.05 -51.93 -0.31 0.28 16 29 H 0.07 0.35 6.44 -51.93 -0.33 0.02 16 30 H 0.08 0.85 8.07 -51.93 -0.42 0.43 16 31 H 0.08 1.23 7.42 -51.93 -0.39 0.85 16 32 H 0.04 0.81 6.15 -51.93 -0.32 0.49 16 33 H 0.05 1.07 6.86 -51.93 -0.36 0.71 16 34 H 0.06 1.22 7.73 -51.93 -0.40 0.82 16 35 H 0.05 0.74 8.08 -51.93 -0.42 0.32 16 36 H 0.06 1.03 6.86 -51.93 -0.36 0.67 16 37 H 0.05 0.62 5.99 -51.93 -0.31 0.31 16 38 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.36 8.96 3.22 -40.82 -0.13 8.83 16 41 H 0.26 7.98 8.31 -40.82 -0.34 7.64 16 42 H 0.11 0.80 7.40 -51.93 -0.38 0.42 16 43 H 0.11 0.53 8.11 -51.93 -0.42 0.11 16 44 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 45 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.11 0.25 8.14 -51.93 -0.42 -0.18 16 48 H 0.14 0.62 8.14 -51.93 -0.42 0.20 16 49 H 0.14 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 389.27 15.07 5.87 5.87 Total: -1.00 -41.27 389.27 -9.05 -50.32 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: -7.95 Total: 3.51 kcal Atomic # 6 Polarization: -3.51 SS G_CDS: 0.69 Total: -2.82 kcal Atomic # 7 Polarization: -64.37 SS G_CDS: -0.27 Total: -64.63 kcal Atomic # 8 Polarization: -34.46 SS G_CDS: -2.00 Total: -36.46 kcal Atomic # 14 Polarization: 23.24 SS G_CDS: -4.71 Total: 18.52 kcal Atomic # 16 Polarization: 26.37 SS G_CDS: -0.66 Total: 25.71 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -41.27 -9.05 -50.32 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755282506.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.256 kcal (2) G-P(sol) polarization free energy of solvation -41.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.14 seconds