Wall clock time and date at job start Wed Apr 1 2020 05:10:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46503 * 119.99848 * 2 1 4 4 C 1.53000 * 109.46916 * 269.99719 * 3 2 1 5 5 C 1.53000 * 109.47527 * 300.00211 * 4 3 2 6 6 C 1.52998 * 109.46930 * 60.00216 * 4 3 2 7 7 C 1.52997 * 109.47102 * 179.97438 * 4 3 2 8 8 N 1.46507 * 109.47038 * 180.02562 * 7 4 3 9 9 C 1.36934 * 119.99948 * 180.02562 * 8 7 4 10 10 H 1.08004 * 119.99907 * 359.97438 * 9 8 7 11 11 C 1.38813 * 120.00062 * 180.02562 * 9 8 7 12 12 N 1.31616 * 120.00140 * 180.02562 * 11 9 8 13 13 Si 1.86799 * 119.99830 * 359.97438 * 11 9 8 14 14 H 1.48500 * 109.46993 * 90.00690 * 13 11 9 15 15 H 1.48502 * 109.47067 * 210.00215 * 13 11 9 16 16 H 1.48499 * 109.47372 * 330.00473 * 13 11 9 17 17 C 1.34776 * 120.00230 * 179.97438 * 2 1 3 18 18 O 1.21281 * 120.00161 * 180.02562 * 17 2 1 19 19 C 1.50700 * 119.99755 * 359.97438 * 17 2 1 20 20 N 1.46505 * 109.46909 * 179.97438 * 19 17 2 21 21 C 1.47068 * 126.29884 * 85.00553 * 20 19 17 22 22 C 1.54066 * 110.04916 * 208.96145 * 21 20 19 23 23 C 1.55602 * 104.29476 * 314.83004 * 22 21 20 24 24 S 1.66842 * 126.22232 * 264.93402 * 20 19 17 25 25 O 1.42107 * 105.14140 * 61.13608 * 24 20 19 26 26 O 1.42098 * 105.27888 * 291.49366 * 24 20 19 27 27 H 1.09004 * 109.47114 * 269.99877 * 1 2 3 28 28 H 1.08997 * 109.47616 * 29.99947 * 1 2 3 29 29 H 1.08994 * 109.47061 * 150.00422 * 1 2 3 30 30 H 1.08996 * 109.47037 * 29.99712 * 3 2 1 31 31 H 1.08998 * 109.47198 * 150.00467 * 3 2 1 32 32 H 1.09004 * 109.47300 * 59.99772 * 5 4 3 33 33 H 1.08998 * 109.47411 * 179.97438 * 5 4 3 34 34 H 1.08999 * 109.46893 * 300.00347 * 5 4 3 35 35 H 1.08996 * 109.47444 * 59.99750 * 6 4 3 36 36 H 1.08998 * 109.47380 * 180.02562 * 6 4 3 37 37 H 1.09004 * 109.47457 * 299.99734 * 6 4 3 38 38 H 1.08996 * 109.47485 * 299.99938 * 7 4 3 39 39 H 1.08998 * 109.47076 * 60.00709 * 7 4 3 40 40 H 0.96996 * 119.99867 * 359.97438 * 8 7 4 41 41 H 0.96996 * 120.00508 * 179.97438 * 12 11 9 42 42 H 1.08999 * 109.46956 * 60.00354 * 19 17 2 43 43 H 1.08996 * 109.47713 * 300.00016 * 19 17 2 44 44 H 1.09002 * 109.35873 * 88.81413 * 21 20 19 45 45 H 1.09000 * 109.35301 * 329.10530 * 21 20 19 46 46 H 1.08992 * 110.46854 * 73.53536 * 22 21 20 47 47 H 1.09002 * 110.46579 * 196.12669 * 22 21 20 48 48 H 1.08998 * 111.16728 * 155.79272 * 23 22 21 49 49 H 1.09005 * 111.16478 * 280.05459 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7104 -1.4425 5 6 3.2794 0.6441 -2.1638 6 6 1.1156 1.8933 -2.1637 7 6 3.2169 3.0357 -1.4426 8 7 3.4605 3.4589 -2.8239 9 6 4.1336 4.6248 -3.0741 10 1 4.4844 5.2327 -2.2532 11 6 4.3640 5.0261 -4.3829 12 7 5.0113 6.1465 -4.6235 13 14 3.7565 3.9750 -5.8026 14 1 2.3829 4.3962 -6.1780 15 1 4.6620 4.1452 -6.9673 16 1 3.7418 2.5482 -5.3914 17 6 2.1389 -1.1672 0.0005 18 8 3.3517 -1.1672 0.0010 19 6 1.3854 -2.4723 0.0017 20 7 2.3375 -3.5858 0.0014 21 6 2.9826 -4.1799 1.1820 22 6 4.3579 -4.7581 0.7974 23 6 4.0931 -5.5310 -0.5268 24 16 2.8868 -4.4130 -1.3393 25 8 3.5447 -3.4360 -2.1344 26 8 1.7611 -5.1334 -1.8220 27 1 -0.3633 0.0000 1.0277 28 1 -0.3634 0.8899 -0.5138 29 1 -0.3633 -0.8900 -0.5137 30 1 1.6084 2.0284 0.5138 31 1 3.1499 1.1385 0.5137 32 1 2.7344 -0.2999 -2.1638 33 1 3.4606 0.9585 -3.1916 34 1 4.2317 0.5138 -1.6499 35 1 0.5265 2.6529 -1.6500 36 1 1.2972 2.2074 -3.1915 37 1 0.5706 0.9493 -2.1638 38 1 2.6274 3.7952 -0.9290 39 1 4.1693 2.9058 -0.9287 40 1 3.1458 2.9127 -3.5611 41 1 5.1726 6.4267 -5.5379 42 1 0.7585 -2.5306 -0.8880 43 1 0.7591 -2.5295 0.8919 44 1 2.3524 -4.9777 1.5750 45 1 3.1136 -3.4137 1.9460 46 1 5.0764 -3.9552 0.6330 47 1 4.7153 -5.4381 1.5708 48 1 5.0044 -5.6232 -1.1177 49 1 3.6532 -6.5088 -0.3305 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755282506.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:10:28 Heat of formation + Delta-G solvation = -99.757606 kcal Electronic energy + Delta-G solvation = -30612.924353 eV Core-core repulsion = 26509.362616 eV Total energy + Delta-G solvation = -4103.561738 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.26078 -38.99235 -38.10262 -37.86396 -36.94991 -36.41204 -34.96430 -34.01626 -32.73083 -29.51998 -28.74779 -28.04008 -27.50385 -26.90498 -25.89211 -23.97945 -22.97655 -20.92079 -20.25825 -19.75732 -19.30808 -18.44767 -18.10059 -17.75510 -17.12400 -16.93347 -16.74130 -16.26332 -15.98270 -15.61190 -15.47618 -15.38462 -15.16622 -14.70482 -14.54790 -14.32243 -14.05972 -14.01454 -13.92923 -13.81786 -13.63909 -13.32026 -13.20822 -13.13117 -13.03997 -12.86714 -12.70781 -12.56519 -12.46967 -12.40179 -12.28201 -12.10168 -12.01416 -11.75209 -11.68529 -11.51963 -11.45386 -11.03215 -11.00395 -9.89279 -9.50260 -9.30407 -8.06317 -5.37651 -0.78431 1.31171 1.34257 1.40969 1.44891 1.70847 2.14498 2.43290 2.62394 3.01198 3.24914 3.35333 3.59707 3.62089 3.67388 3.89560 3.89950 3.93747 4.03571 4.07083 4.26593 4.41759 4.43816 4.46694 4.53496 4.56308 4.68421 4.69413 4.77092 4.82939 4.85109 4.89163 4.92013 4.99243 5.02215 5.07720 5.11043 5.13053 5.16142 5.36859 5.44616 5.48823 5.63629 5.72925 6.18894 6.50553 7.04829 7.30507 7.82561 8.01289 9.15690 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.015645 B = 0.002959 C = 0.002753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.242406 B = 9458.907304 C =10167.847062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.611 5.611 3 C 0.138 3.862 4 C -0.083 4.083 5 C -0.110 4.110 6 C -0.133 4.133 7 C 0.168 3.832 8 N -0.755 5.755 9 C -0.230 4.230 10 H 0.060 0.940 11 C -0.061 4.061 12 N -0.982 5.982 13 Si 0.946 3.054 14 H -0.270 1.270 15 H -0.292 1.292 16 H -0.267 1.267 17 C 0.474 3.526 18 O -0.555 6.555 19 C 0.139 3.861 20 N -0.979 5.979 21 C 0.077 3.923 22 C -0.126 4.126 23 C -0.561 4.561 24 S 2.543 3.457 25 O -1.003 7.003 26 O -0.995 6.995 27 H 0.086 0.914 28 H 0.083 0.917 29 H 0.088 0.912 30 H 0.106 0.894 31 H 0.065 0.935 32 H 0.048 0.952 33 H 0.024 0.976 34 H 0.035 0.965 35 H 0.074 0.926 36 H 0.031 0.969 37 H 0.075 0.925 38 H 0.039 0.961 39 H 0.012 0.988 40 H 0.364 0.636 41 H 0.258 0.742 42 H 0.112 0.888 43 H 0.153 0.847 44 H 0.111 0.889 45 H 0.094 0.906 46 H 0.077 0.923 47 H 0.148 0.852 48 H 0.154 0.846 49 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.785 -29.806 18.706 37.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.344 5.344 3 C 0.014 3.986 4 C -0.085 4.085 5 C -0.167 4.167 6 C -0.190 4.190 7 C 0.041 3.959 8 N -0.401 5.401 9 C -0.361 4.361 10 H 0.078 0.922 11 C -0.252 4.252 12 N -0.633 5.633 13 Si 0.774 3.226 14 H -0.196 1.196 15 H -0.219 1.219 16 H -0.192 1.192 17 C 0.260 3.740 18 O -0.432 6.432 19 C 0.011 3.989 20 N -0.819 5.819 21 C -0.048 4.048 22 C -0.165 4.165 23 C -0.696 4.696 24 S 2.644 3.356 25 O -0.993 6.993 26 O -0.985 6.985 27 H 0.104 0.896 28 H 0.102 0.898 29 H 0.106 0.894 30 H 0.124 0.876 31 H 0.083 0.917 32 H 0.067 0.933 33 H 0.043 0.957 34 H 0.054 0.946 35 H 0.093 0.907 36 H 0.050 0.950 37 H 0.093 0.907 38 H 0.057 0.943 39 H 0.030 0.970 40 H 0.198 0.802 41 H 0.067 0.933 42 H 0.129 0.871 43 H 0.170 0.830 44 H 0.129 0.871 45 H 0.112 0.888 46 H 0.096 0.904 47 H 0.166 0.834 48 H 0.172 0.828 49 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -12.448 -29.424 17.790 36.568 hybrid contribution 0.749 0.149 -1.062 1.308 sum -11.699 -29.275 16.728 35.689 Atomic orbital electron populations 1.22320 0.76959 1.04928 1.04091 1.47925 1.08436 1.04957 1.73119 1.21273 0.97834 0.85582 0.93894 1.21123 0.96172 0.93879 0.97306 1.21578 0.99214 0.97539 0.98405 1.21889 0.95442 1.02253 0.99454 1.20722 0.96351 0.93666 0.85169 1.42780 1.68928 1.24665 1.03713 1.19083 1.26708 0.97549 0.92761 0.92219 1.25396 1.01540 0.98655 0.99624 1.69859 1.48380 1.25188 1.19913 0.85543 0.78311 0.79151 0.79602 1.19573 1.21893 1.19216 1.21998 0.88747 0.87022 0.76193 1.90722 1.15532 1.87549 1.49425 1.21120 0.89575 0.80781 1.07439 1.56783 1.57480 1.44619 1.23062 1.22352 0.93243 0.99875 0.89312 1.22780 0.97260 1.00306 0.96169 1.30651 1.15740 1.13369 1.09807 1.06974 0.77157 0.76978 0.74449 1.93626 1.77062 1.59269 1.69296 1.93562 1.51073 1.74339 1.79520 0.89581 0.89785 0.89384 0.87606 0.91677 0.93258 0.95734 0.94568 0.90729 0.95029 0.90652 0.94336 0.96987 0.80187 0.93281 0.87063 0.82995 0.87121 0.88771 0.90380 0.83415 0.82822 0.80698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.57 9.15 127.77 1.17 1.73 16 2 N -0.61 -11.88 2.40 -846.77 -2.03 -13.91 16 3 C 0.14 3.42 4.60 86.38 0.40 3.82 16 4 C -0.08 -2.70 0.60 -52.18 -0.03 -2.73 16 5 C -0.11 -4.28 6.97 71.98 0.50 -3.78 16 6 C -0.13 -3.75 7.05 71.98 0.51 -3.24 16 7 C 0.17 6.86 5.15 86.38 0.44 7.30 16 8 N -0.75 -38.19 4.81 -343.45 -1.65 -39.84 16 9 C -0.23 -13.90 10.47 84.03 0.88 -13.02 16 10 H 0.06 3.89 8.06 -2.91 -0.02 3.87 16 11 C -0.06 -3.77 5.50 84.86 0.47 -3.31 16 12 N -0.98 -65.45 13.97 21.65 0.30 -65.15 16 13 Si 0.95 48.84 27.74 68.60 1.90 50.74 16 14 H -0.27 -13.25 7.11 99.48 0.71 -12.54 16 15 H -0.29 -15.10 7.11 99.48 0.71 -14.40 16 16 H -0.27 -13.18 6.52 99.48 0.65 -12.54 16 17 C 0.47 10.90 6.15 87.66 0.54 11.44 16 18 O -0.56 -17.93 14.20 -3.03 -0.04 -17.97 16 19 C 0.14 2.04 5.38 85.63 0.46 2.50 16 20 N -0.98 -15.59 2.80 -516.54 -1.45 -17.04 16 21 C 0.08 0.61 6.83 86.63 0.59 1.21 16 22 C -0.13 -0.86 6.79 31.85 0.22 -0.65 16 23 C -0.56 -4.45 7.51 72.88 0.55 -3.90 16 24 S 2.54 51.46 6.16 -56.49 -0.35 51.11 16 25 O -1.00 -32.57 18.14 -127.76 -2.32 -34.89 16 26 O -1.00 -24.89 18.14 -127.76 -2.32 -27.21 16 27 H 0.09 0.40 8.14 -2.38 -0.02 0.38 16 28 H 0.08 0.84 6.05 -2.39 -0.01 0.83 16 29 H 0.09 0.53 6.44 -2.39 -0.02 0.52 16 30 H 0.11 2.03 8.07 -2.39 -0.02 2.01 16 31 H 0.06 1.90 7.42 -2.39 -0.02 1.88 16 32 H 0.05 1.84 6.15 -2.38 -0.01 1.83 16 33 H 0.02 1.04 6.86 -2.39 -0.02 1.02 16 34 H 0.04 1.54 7.73 -2.39 -0.02 1.52 16 35 H 0.07 1.80 8.08 -2.39 -0.02 1.78 16 36 H 0.03 1.06 6.86 -2.39 -0.02 1.04 16 37 H 0.07 1.71 5.99 -2.38 -0.01 1.70 16 38 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 40 H 0.36 18.11 3.22 -92.71 -0.30 17.81 16 41 H 0.26 16.35 8.31 -92.71 -0.77 15.58 16 42 H 0.11 1.48 7.40 -2.39 -0.02 1.47 16 43 H 0.15 0.83 8.11 -2.39 -0.02 0.81 16 44 H 0.11 0.15 8.14 -2.39 -0.02 0.13 16 45 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 46 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 47 H 0.15 -0.05 8.14 -2.39 -0.02 -0.07 16 48 H 0.15 0.98 8.14 -2.39 -0.02 0.96 16 49 H 0.18 0.25 8.14 -2.38 -0.02 0.23 16 Total: -1.00 -96.62 389.27 -0.67 -97.28 By element: Atomic # 1 Polarization: 18.90 SS G_CDS: 0.59 Total: 19.50 kcal Atomic # 6 Polarization: -9.31 SS G_CDS: 6.69 Total: -2.62 kcal Atomic # 7 Polarization: -131.11 SS G_CDS: -4.83 Total: -135.94 kcal Atomic # 8 Polarization: -75.39 SS G_CDS: -4.68 Total: -80.07 kcal Atomic # 14 Polarization: 48.84 SS G_CDS: 1.90 Total: 50.74 kcal Atomic # 16 Polarization: 51.46 SS G_CDS: -0.35 Total: 51.11 kcal Total: -96.62 -0.67 -97.28 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755282506.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.475 kcal (2) G-P(sol) polarization free energy of solvation -96.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds