Wall clock time and date at job start Wed Apr 1 2020 04:59:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47272 * 2 1 4 4 C 1.53000 * 109.47272 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.46731 * 305.00014 * 4 3 2 6 6 C 1.50703 * 109.47241 * 185.00026 * 4 3 2 7 7 O 1.21289 * 119.99481 * 329.99870 * 6 4 3 8 8 N 1.34769 * 120.00101 * 149.99904 * 6 4 3 9 9 C 1.47424 * 125.64956 * 359.68657 * 8 6 4 10 10 C 1.55136 * 104.72370 * 155.81618 * 9 8 6 11 11 H 1.09000 * 110.90561 * 155.27780 * 10 9 8 12 12 N 1.46497 * 111.22556 * 279.18489 * 10 9 8 13 13 C 1.36935 * 119.99800 * 267.20096 * 12 10 9 14 14 H 1.08003 * 120.00361 * 0.02562 * 13 12 10 15 15 C 1.38811 * 120.00412 * 180.02562 * 13 12 10 16 16 N 1.31614 * 120.00677 * 180.02562 * 15 13 12 17 17 Si 1.86802 * 119.99584 * 359.97438 * 15 13 12 18 18 H 1.48500 * 109.47226 * 90.00102 * 17 15 13 19 19 H 1.48510 * 109.47015 * 210.00296 * 17 15 13 20 20 H 1.48503 * 109.47268 * 330.00023 * 17 15 13 21 21 C 1.55166 * 101.48117 * 37.30145 * 10 9 8 22 22 C 1.52997 * 110.71604 * 205.96875 * 21 10 9 23 23 C 1.52998 * 110.87393 * 82.76568 * 21 10 9 24 24 C 1.47023 * 125.64888 * 180.02562 * 8 6 4 25 25 S 1.81393 * 109.47098 * 64.99978 * 4 3 2 26 26 N 1.65597 * 104.45128 * 59.99896 * 25 4 3 27 27 O 1.42102 * 110.54358 * 308.37380 * 25 4 3 28 28 O 1.42100 * 110.54290 * 171.62507 * 25 4 3 29 29 H 1.09003 * 109.46908 * 60.00015 * 1 2 3 30 30 H 1.08994 * 109.47348 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46944 * 300.00523 * 1 2 3 32 32 H 1.09002 * 109.47223 * 240.00128 * 2 1 3 33 33 H 1.09003 * 109.46908 * 119.99984 * 2 1 3 34 34 H 1.09003 * 109.47274 * 59.99254 * 3 2 1 35 35 H 1.09003 * 109.47141 * 299.99841 * 3 2 1 36 36 H 1.08997 * 110.37239 * 274.75197 * 9 8 6 37 37 H 1.09003 * 110.36223 * 37.07341 * 9 8 6 38 38 H 0.97000 * 120.00668 * 87.20391 * 12 10 9 39 39 H 0.96996 * 120.00781 * 180.02562 * 16 15 13 40 40 H 1.09001 * 109.46646 * 174.97599 * 22 21 10 41 41 H 1.09001 * 109.47200 * 294.97348 * 22 21 10 42 42 H 1.09003 * 109.47537 * 54.97679 * 22 21 10 43 43 H 1.09002 * 109.46998 * 304.93669 * 23 21 10 44 44 H 1.08993 * 109.46947 * 64.93215 * 23 21 10 45 45 H 1.08996 * 109.46988 * 184.93846 * 23 21 10 46 46 H 1.09003 * 109.88000 * 300.43829 * 24 8 6 47 47 H 1.08996 * 109.88667 * 61.44889 * 24 8 6 48 48 H 0.97001 * 120.00224 * 0.02562 * 26 25 4 49 49 H 0.97005 * 120.00050 * 179.72325 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9330 0.8532 0.8427 6 6 4.0724 2.8579 0.1245 7 8 3.4170 3.7752 -0.3229 8 7 5.2497 3.1044 0.7323 9 6 6.1403 2.0894 1.3239 10 6 7.5473 2.7429 1.3093 11 1 8.1858 2.3086 2.0786 12 7 8.1707 2.6304 -0.0116 13 6 8.9923 1.5717 -0.2931 14 1 9.1804 0.8194 0.4586 15 6 9.5834 1.4654 -1.5445 16 7 10.3727 0.4476 -1.8152 17 14 9.2575 2.7662 -2.8449 18 1 10.2723 3.8444 -2.7317 19 1 9.3389 2.1493 -4.1934 20 1 7.9022 3.3388 -2.6435 21 6 7.2052 4.2200 1.6390 22 6 8.2712 5.1613 1.0747 23 6 7.0528 4.4206 3.1481 24 6 5.8552 4.4307 0.9215 25 16 4.1753 0.7195 -1.5490 26 7 3.5576 1.7003 -2.7316 27 8 3.5628 -0.5411 -1.7838 28 8 5.5828 0.8819 -1.6587 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6766 1.9564 0.8899 35 1 1.6767 1.9563 -0.8900 36 1 5.8342 1.8651 2.3456 37 1 6.1373 1.1830 0.7184 38 1 8.0015 3.3059 -0.6869 39 1 10.7861 0.3734 -2.6895 40 1 7.9669 6.1950 1.2392 41 1 9.2208 4.9778 1.5773 42 1 8.3853 4.9819 0.0056 43 1 6.3116 3.7210 3.5345 44 1 8.0105 4.2419 3.6369 45 1 6.7277 5.4415 3.3479 46 1 6.0199 4.9045 -0.0463 47 1 5.2013 5.0532 1.5322 48 1 3.0068 2.4618 -2.4915 49 1 3.7503 1.5159 -3.6643 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755760713.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:59:10 Heat of formation + Delta-G solvation = -90.027198 kcal Electronic energy + Delta-G solvation = -31814.175276 eV Core-core repulsion = 27711.035481 eV Total energy + Delta-G solvation = -4103.139795 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -40.39936 -38.45574 -37.18627 -35.81667 -35.51934 -34.07492 -33.41229 -33.03308 -31.02348 -30.93638 -28.42478 -26.92236 -26.79205 -24.56328 -23.59119 -21.59779 -21.50482 -19.93048 -19.20629 -18.98546 -18.10477 -17.54974 -17.39570 -16.62058 -16.18416 -15.93465 -15.41341 -15.24472 -14.61164 -14.40052 -14.26637 -13.99273 -13.84660 -13.67692 -13.26277 -12.90327 -12.76440 -12.67718 -12.45742 -12.33626 -12.15097 -12.13164 -12.05544 -11.88496 -11.73953 -11.65032 -11.59757 -11.26872 -11.19018 -10.98313 -10.90567 -10.62923 -10.58611 -10.35120 -10.32137 -10.21857 -9.97383 -9.88301 -9.50003 -8.97266 -8.50516 -7.22498 -5.70218 -3.05379 0.12769 2.48456 2.72903 3.01037 3.43597 3.51669 3.52964 3.62963 3.90664 4.17258 4.61079 4.68966 4.69652 4.80942 4.89690 4.92801 4.96205 5.00345 5.23284 5.28261 5.41961 5.48498 5.50667 5.60307 5.62980 5.67990 5.72585 5.77703 5.84519 5.88454 5.95325 6.00978 6.02516 6.06706 6.08058 6.15849 6.20548 6.26419 6.33877 6.41293 6.59169 6.66870 7.11838 7.51795 7.98839 8.00924 8.47924 9.24592 9.98599 10.14811 11.47967 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010961 B = 0.005314 C = 0.004128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2553.904511 B = 5267.379027 C = 6781.736035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.170 4.170 3 C -0.083 4.083 4 C -0.616 4.616 5 H 0.159 0.841 6 C 0.547 3.453 7 O -0.538 6.538 8 N -0.588 5.588 9 C 0.051 3.949 10 C 0.188 3.812 11 H 0.086 0.914 12 N -0.724 5.724 13 C -0.240 4.240 14 H 0.091 0.909 15 C 0.018 3.982 16 N -0.932 5.932 17 Si 0.877 3.123 18 H -0.288 1.288 19 H -0.292 1.292 20 H -0.273 1.273 21 C -0.094 4.094 22 C -0.128 4.128 23 C -0.131 4.131 24 C 0.119 3.881 25 S 2.613 3.387 26 N -1.248 6.248 27 O -0.951 6.951 28 O -0.904 6.904 29 H 0.055 0.945 30 H 0.058 0.942 31 H 0.052 0.948 32 H 0.108 0.892 33 H 0.068 0.932 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.065 0.935 37 H 0.087 0.913 38 H 0.364 0.636 39 H 0.258 0.742 40 H 0.048 0.952 41 H 0.065 0.935 42 H 0.062 0.938 43 H 0.054 0.946 44 H 0.062 0.938 45 H 0.054 0.946 46 H 0.069 0.931 47 H 0.067 0.933 48 H 0.416 0.584 49 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.616 5.153 7.302 18.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.208 4.208 3 C -0.122 4.122 4 C -0.725 4.725 5 H 0.176 0.824 6 C 0.332 3.668 7 O -0.417 6.417 8 N -0.319 5.319 9 C -0.074 4.074 10 C 0.075 3.925 11 H 0.104 0.896 12 N -0.365 5.365 13 C -0.370 4.370 14 H 0.108 0.892 15 C -0.178 4.178 16 N -0.579 5.579 17 Si 0.708 3.292 18 H -0.215 1.215 19 H -0.218 1.218 20 H -0.199 1.199 21 C -0.095 4.095 22 C -0.185 4.185 23 C -0.188 4.188 24 C -0.003 4.003 25 S 2.699 3.301 26 N -0.924 5.924 27 O -0.940 6.940 28 O -0.893 6.893 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.126 0.874 33 H 0.087 0.913 34 H 0.103 0.897 35 H 0.100 0.900 36 H 0.083 0.917 37 H 0.105 0.895 38 H 0.199 0.801 39 H 0.068 0.932 40 H 0.067 0.933 41 H 0.084 0.916 42 H 0.081 0.919 43 H 0.073 0.927 44 H 0.081 0.919 45 H 0.073 0.927 46 H 0.087 0.913 47 H 0.085 0.915 48 H 0.243 0.757 49 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -16.209 4.503 7.059 18.243 hybrid contribution -0.774 1.395 -0.867 1.816 sum -16.983 5.897 6.192 19.014 Atomic orbital electron populations 1.21683 0.95004 1.01944 1.01741 1.22267 0.97279 0.95537 1.05701 1.21249 0.86874 0.98836 1.05210 1.30646 1.09011 1.06710 1.26113 0.82359 1.18678 0.80566 0.88188 0.79344 1.90693 1.56610 1.45029 1.49389 1.48281 1.18911 1.09908 1.54824 1.23769 0.93455 0.93213 0.97000 1.21294 0.90287 0.90765 0.90122 0.89607 1.42658 1.55269 1.28643 1.09893 1.18937 1.18535 1.00851 0.98631 0.89156 1.24532 0.98969 0.97339 0.96997 1.69681 1.35253 1.30702 1.22289 0.86651 0.77876 0.82020 0.82693 1.21456 1.21849 1.19910 1.22003 0.93873 0.98184 0.95468 1.21654 0.97992 0.96930 1.01952 1.21749 1.02048 1.01259 0.93787 1.22101 0.93645 0.84021 1.00544 1.05253 0.75094 0.74293 0.75461 1.53094 1.70920 1.46453 1.21910 1.93531 1.77701 1.39889 1.82886 1.93859 1.27294 1.84909 1.83194 0.92549 0.92288 0.92911 0.87385 0.91291 0.89712 0.90013 0.91703 0.89459 0.80143 0.93168 0.93337 0.91569 0.91924 0.92661 0.91874 0.92682 0.91298 0.91482 0.75682 0.75035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.91 37.16 0.37 -0.89 16 2 C -0.17 -1.75 5.65 -26.73 -0.15 -1.90 16 3 C -0.08 -0.89 4.14 -26.73 -0.11 -1.00 16 4 C -0.62 -7.93 2.11 -27.88 -0.06 -7.99 16 5 H 0.16 1.70 7.17 -51.92 -0.37 1.33 16 6 C 0.55 8.37 6.62 -10.99 -0.07 8.30 16 7 O -0.54 -8.92 15.99 5.55 0.09 -8.83 16 8 N -0.59 -9.18 3.32 -170.37 -0.57 -9.74 16 9 C 0.05 0.81 5.67 -2.41 -0.01 0.79 16 10 C 0.19 3.25 2.96 -65.66 -0.19 3.06 16 11 H 0.09 1.45 7.99 -51.93 -0.42 1.04 16 12 N -0.72 -16.26 4.38 -51.23 -0.22 -16.49 16 13 C -0.24 -6.55 10.44 -15.06 -0.16 -6.71 16 14 H 0.09 2.60 8.06 -52.48 -0.42 2.18 16 15 C 0.02 0.52 5.50 -17.43 -0.10 0.43 16 16 N -0.93 -29.39 13.97 55.49 0.78 -28.61 16 17 Si 0.88 22.91 27.73 -169.99 -4.71 18.20 16 18 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 19 H -0.29 -7.81 7.11 56.52 0.40 -7.41 16 20 H -0.27 -6.93 6.52 56.52 0.37 -6.56 16 21 C -0.09 -1.30 0.80 -152.67 -0.12 -1.43 16 22 C -0.13 -1.81 8.15 37.16 0.30 -1.51 16 23 C -0.13 -1.42 8.44 37.16 0.31 -1.10 16 24 C 0.12 1.75 6.03 -3.06 -0.02 1.74 16 25 S 2.61 40.25 5.46 -107.50 -0.59 39.66 16 26 N -1.25 -15.91 9.13 60.35 0.55 -15.36 16 27 O -0.95 -15.50 14.89 -57.54 -0.86 -16.36 16 28 O -0.90 -18.78 16.93 -57.54 -0.97 -19.76 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.11 1.30 4.90 -51.93 -0.25 1.05 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.08 0.82 6.97 -51.93 -0.36 0.46 16 36 H 0.06 0.80 7.71 -51.93 -0.40 0.40 16 37 H 0.09 1.53 6.43 -51.93 -0.33 1.20 16 38 H 0.36 8.41 4.18 -40.82 -0.17 8.24 16 39 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 40 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 42 H 0.06 1.04 6.34 -51.93 -0.33 0.71 16 43 H 0.05 0.57 7.44 -51.93 -0.39 0.18 16 44 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 46 H 0.07 1.11 7.82 -51.93 -0.41 0.70 16 47 H 0.07 0.88 7.85 -51.93 -0.41 0.48 16 48 H 0.42 4.71 7.18 -34.47 -0.25 4.46 16 49 H 0.42 4.71 8.96 -34.47 -0.31 4.40 16 LS Contribution 389.56 15.07 5.87 5.87 Total: -1.00 -36.02 389.56 -8.44 -44.46 By element: Atomic # 1 Polarization: 22.96 SS G_CDS: -7.79 Total: 15.17 kcal Atomic # 6 Polarization: -8.20 SS G_CDS: -0.01 Total: -8.21 kcal Atomic # 7 Polarization: -70.73 SS G_CDS: 0.54 Total: -70.20 kcal Atomic # 8 Polarization: -43.21 SS G_CDS: -1.74 Total: -44.95 kcal Atomic # 14 Polarization: 22.91 SS G_CDS: -4.71 Total: 18.20 kcal Atomic # 16 Polarization: 40.25 SS G_CDS: -0.59 Total: 39.66 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -36.02 -8.44 -44.46 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755760713.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.569 kcal (2) G-P(sol) polarization free energy of solvation -36.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds