Wall clock time and date at job start Wed Apr 1 2020 04:59:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47272 * 2 1 4 4 C 1.53000 * 109.47272 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.46731 * 305.00014 * 4 3 2 6 6 C 1.50703 * 109.47241 * 185.00026 * 4 3 2 7 7 O 1.21289 * 119.99481 * 329.99870 * 6 4 3 8 8 N 1.34769 * 120.00101 * 149.99904 * 6 4 3 9 9 C 1.47424 * 125.64956 * 359.68657 * 8 6 4 10 10 C 1.55136 * 104.72370 * 155.81618 * 9 8 6 11 11 H 1.09000 * 110.90561 * 155.27780 * 10 9 8 12 12 N 1.46497 * 111.22556 * 279.18489 * 10 9 8 13 13 C 1.36935 * 119.99800 * 267.20096 * 12 10 9 14 14 H 1.08003 * 120.00361 * 0.02562 * 13 12 10 15 15 C 1.38811 * 120.00412 * 180.02562 * 13 12 10 16 16 N 1.31614 * 120.00677 * 180.02562 * 15 13 12 17 17 Si 1.86802 * 119.99584 * 359.97438 * 15 13 12 18 18 H 1.48500 * 109.47226 * 90.00102 * 17 15 13 19 19 H 1.48510 * 109.47015 * 210.00296 * 17 15 13 20 20 H 1.48503 * 109.47268 * 330.00023 * 17 15 13 21 21 C 1.55166 * 101.48117 * 37.30145 * 10 9 8 22 22 C 1.52997 * 110.71604 * 205.96875 * 21 10 9 23 23 C 1.52998 * 110.87393 * 82.76568 * 21 10 9 24 24 C 1.47023 * 125.64888 * 180.02562 * 8 6 4 25 25 S 1.81393 * 109.47098 * 64.99978 * 4 3 2 26 26 N 1.65597 * 104.45128 * 59.99896 * 25 4 3 27 27 O 1.42102 * 110.54358 * 308.37380 * 25 4 3 28 28 O 1.42100 * 110.54290 * 171.62507 * 25 4 3 29 29 H 1.09003 * 109.46908 * 60.00015 * 1 2 3 30 30 H 1.08994 * 109.47348 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46944 * 300.00523 * 1 2 3 32 32 H 1.09002 * 109.47223 * 240.00128 * 2 1 3 33 33 H 1.09003 * 109.46908 * 119.99984 * 2 1 3 34 34 H 1.09003 * 109.47274 * 59.99254 * 3 2 1 35 35 H 1.09003 * 109.47141 * 299.99841 * 3 2 1 36 36 H 1.08997 * 110.37239 * 274.75197 * 9 8 6 37 37 H 1.09003 * 110.36223 * 37.07341 * 9 8 6 38 38 H 0.97000 * 120.00668 * 87.20391 * 12 10 9 39 39 H 0.96996 * 120.00781 * 180.02562 * 16 15 13 40 40 H 1.09001 * 109.46646 * 174.97599 * 22 21 10 41 41 H 1.09001 * 109.47200 * 294.97348 * 22 21 10 42 42 H 1.09003 * 109.47537 * 54.97679 * 22 21 10 43 43 H 1.09002 * 109.46998 * 304.93669 * 23 21 10 44 44 H 1.08993 * 109.46947 * 64.93215 * 23 21 10 45 45 H 1.08996 * 109.46988 * 184.93846 * 23 21 10 46 46 H 1.09003 * 109.88000 * 300.43829 * 24 8 6 47 47 H 1.08996 * 109.88667 * 61.44889 * 24 8 6 48 48 H 0.97001 * 120.00224 * 0.02562 * 26 25 4 49 49 H 0.97005 * 120.00050 * 179.72325 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9330 0.8532 0.8427 6 6 4.0724 2.8579 0.1245 7 8 3.4170 3.7752 -0.3229 8 7 5.2497 3.1044 0.7323 9 6 6.1403 2.0894 1.3239 10 6 7.5473 2.7429 1.3093 11 1 8.1858 2.3086 2.0786 12 7 8.1707 2.6304 -0.0116 13 6 8.9923 1.5717 -0.2931 14 1 9.1804 0.8194 0.4586 15 6 9.5834 1.4654 -1.5445 16 7 10.3727 0.4476 -1.8152 17 14 9.2575 2.7662 -2.8449 18 1 10.2723 3.8444 -2.7317 19 1 9.3389 2.1493 -4.1934 20 1 7.9022 3.3388 -2.6435 21 6 7.2052 4.2200 1.6390 22 6 8.2712 5.1613 1.0747 23 6 7.0528 4.4206 3.1481 24 6 5.8552 4.4307 0.9215 25 16 4.1753 0.7195 -1.5490 26 7 3.5576 1.7003 -2.7316 27 8 3.5628 -0.5411 -1.7838 28 8 5.5828 0.8819 -1.6587 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6766 1.9564 0.8899 35 1 1.6767 1.9563 -0.8900 36 1 5.8342 1.8651 2.3456 37 1 6.1373 1.1830 0.7184 38 1 8.0015 3.3059 -0.6869 39 1 10.7861 0.3734 -2.6895 40 1 7.9669 6.1950 1.2392 41 1 9.2208 4.9778 1.5773 42 1 8.3853 4.9819 0.0056 43 1 6.3116 3.7210 3.5345 44 1 8.0105 4.2419 3.6369 45 1 6.7277 5.4415 3.3479 46 1 6.0199 4.9045 -0.0463 47 1 5.2013 5.0532 1.5322 48 1 3.0068 2.4618 -2.4915 49 1 3.7503 1.5159 -3.6643 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755760713.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:59:08 Heat of formation + Delta-G solvation = -118.864387 kcal Electronic energy + Delta-G solvation = -31815.425751 eV Core-core repulsion = 27711.035481 eV Total energy + Delta-G solvation = -4104.390270 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.61772 -39.68704 -38.45024 -37.16268 -36.48541 -35.78194 -34.75303 -34.13446 -32.96099 -31.89042 -29.82482 -28.01855 -27.85698 -25.70580 -25.18263 -23.04526 -22.42399 -21.14638 -20.56721 -20.24381 -19.40777 -19.15266 -18.60331 -17.84676 -17.47875 -17.02285 -16.78762 -16.40262 -16.24204 -15.94986 -15.31734 -15.20103 -14.98867 -14.77384 -14.59470 -14.42143 -13.94654 -13.80697 -13.74006 -13.52560 -13.39448 -13.32276 -13.28071 -13.12932 -13.05281 -12.88516 -12.79167 -12.64005 -12.50933 -12.24721 -11.99891 -11.95832 -11.90206 -11.83588 -11.55674 -11.42625 -11.36602 -11.28285 -11.03691 -10.92656 -9.82271 -9.17187 -7.95549 -5.23967 -1.08209 1.28908 1.31885 1.38644 1.43060 1.58594 1.84295 2.44635 2.53082 2.79957 3.12685 3.34968 3.48413 3.60987 3.65284 3.75971 3.80060 4.00451 4.07801 4.15100 4.27279 4.41531 4.52454 4.55412 4.64695 4.67571 4.72781 4.81272 4.86987 4.90552 4.92605 4.94438 5.03626 5.07583 5.13139 5.21172 5.22395 5.29475 5.32677 5.42759 5.48146 5.55227 5.84584 6.15148 6.28873 6.30486 6.78255 7.16244 7.93350 8.08005 9.26547 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010961 B = 0.005314 C = 0.004128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2553.904511 B = 5267.379027 C = 6781.736035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.173 4.173 3 C -0.081 4.081 4 C -0.598 4.598 5 H 0.181 0.819 6 C 0.543 3.457 7 O -0.550 6.550 8 N -0.593 5.593 9 C 0.055 3.945 10 C 0.170 3.830 11 H 0.090 0.910 12 N -0.730 5.730 13 C -0.203 4.203 14 H 0.069 0.931 15 C -0.052 4.052 16 N -0.983 5.983 17 Si 0.930 3.070 18 H -0.275 1.275 19 H -0.305 1.305 20 H -0.266 1.266 21 C -0.080 4.080 22 C -0.129 4.129 23 C -0.125 4.125 24 C 0.115 3.885 25 S 2.615 3.385 26 N -1.239 6.239 27 O -0.967 6.967 28 O -0.967 6.967 29 H 0.059 0.941 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.088 0.912 33 H 0.078 0.922 34 H 0.101 0.899 35 H 0.087 0.913 36 H 0.108 0.892 37 H 0.064 0.936 38 H 0.362 0.638 39 H 0.252 0.748 40 H 0.076 0.924 41 H 0.063 0.937 42 H 0.032 0.968 43 H 0.065 0.935 44 H 0.068 0.932 45 H 0.075 0.925 46 H 0.050 0.950 47 H 0.091 0.909 48 H 0.423 0.577 49 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.166 7.148 9.652 22.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.211 4.211 3 C -0.120 4.120 4 C -0.710 4.710 5 H 0.199 0.801 6 C 0.328 3.672 7 O -0.430 6.430 8 N -0.324 5.324 9 C -0.070 4.070 10 C 0.060 3.940 11 H 0.108 0.892 12 N -0.371 5.371 13 C -0.334 4.334 14 H 0.087 0.913 15 C -0.244 4.244 16 N -0.635 5.635 17 Si 0.760 3.240 18 H -0.201 1.201 19 H -0.233 1.233 20 H -0.192 1.192 21 C -0.081 4.081 22 C -0.186 4.186 23 C -0.182 4.182 24 C -0.007 4.007 25 S 2.705 3.295 26 N -0.918 5.918 27 O -0.956 6.956 28 O -0.955 6.955 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.106 0.894 33 H 0.097 0.903 34 H 0.120 0.880 35 H 0.105 0.895 36 H 0.126 0.874 37 H 0.083 0.917 38 H 0.195 0.805 39 H 0.061 0.939 40 H 0.095 0.905 41 H 0.082 0.918 42 H 0.051 0.949 43 H 0.084 0.916 44 H 0.087 0.913 45 H 0.094 0.906 46 H 0.069 0.931 47 H 0.109 0.891 48 H 0.253 0.747 49 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -18.794 6.532 9.427 22.017 hybrid contribution -0.101 0.797 -1.451 1.658 sum -18.895 7.329 7.977 21.780 Atomic orbital electron populations 1.21703 0.93584 1.02584 1.02575 1.22271 0.98601 0.95012 1.05198 1.21363 0.84857 0.99457 1.06327 1.30512 1.10630 1.05405 1.24463 0.80118 1.18943 0.80465 0.88782 0.78961 1.90689 1.56980 1.45632 1.49718 1.48377 1.18874 1.10170 1.54941 1.23656 0.92314 0.92103 0.98955 1.21668 0.90912 0.93931 0.87537 0.89194 1.42650 1.55257 1.27150 1.12008 1.18970 1.16671 1.00510 0.97279 0.91337 1.25148 1.00379 0.99511 0.99329 1.69827 1.37947 1.33234 1.22505 0.85776 0.78261 0.80178 0.79811 1.20134 1.23274 1.19164 1.21957 0.93205 0.95139 0.97846 1.21659 0.98237 0.98780 0.99943 1.21727 1.02894 1.02905 0.90664 1.22225 0.94399 0.83890 1.00197 1.04770 0.73948 0.74406 0.76389 1.52841 1.70588 1.46456 1.21928 1.93527 1.77384 1.41099 1.83561 1.93802 1.31199 1.85875 1.84667 0.92233 0.91835 0.91599 0.89389 0.90340 0.88016 0.89453 0.87376 0.91709 0.80465 0.93895 0.90508 0.91760 0.94883 0.91561 0.91314 0.90623 0.93118 0.89091 0.74702 0.74244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 9.91 71.98 0.71 -1.43 16 2 C -0.17 -3.17 5.65 30.59 0.17 -3.00 16 3 C -0.08 -1.52 4.14 30.59 0.13 -1.39 16 4 C -0.60 -14.15 2.11 29.85 0.06 -14.09 16 5 H 0.18 3.42 7.17 -2.39 -0.02 3.41 16 6 C 0.54 15.30 6.62 87.66 0.58 15.88 16 7 O -0.55 -16.85 15.99 -3.06 -0.05 -16.90 16 8 N -0.59 -16.99 3.32 -811.33 -2.70 -19.69 16 9 C 0.05 1.60 5.67 86.93 0.49 2.09 16 10 C 0.17 5.60 2.96 46.47 0.14 5.74 16 11 H 0.09 2.89 7.99 -2.39 -0.02 2.87 16 12 N -0.73 -32.73 4.38 -315.99 -1.38 -34.11 16 13 C -0.20 -11.34 10.44 84.03 0.88 -10.46 16 14 H 0.07 4.07 8.06 -2.91 -0.02 4.04 16 15 C -0.05 -3.18 5.50 84.86 0.47 -2.71 16 16 N -0.98 -64.59 13.97 21.65 0.30 -64.29 16 17 Si 0.93 48.76 27.73 68.60 1.90 50.67 16 18 H -0.28 -13.65 7.11 99.48 0.71 -12.94 16 19 H -0.31 -16.52 7.11 99.48 0.71 -15.81 16 20 H -0.27 -13.39 6.52 99.48 0.65 -12.74 16 21 C -0.08 -2.00 0.80 -50.99 -0.04 -2.04 16 22 C -0.13 -3.37 8.15 71.98 0.59 -2.79 16 23 C -0.12 -2.14 8.44 71.98 0.61 -1.53 16 24 C 0.11 3.05 6.03 86.73 0.52 3.57 16 25 S 2.61 80.12 5.46 -56.49 -0.31 79.81 16 26 N -1.24 -30.98 9.13 37.02 0.34 -30.64 16 27 O -0.97 -31.61 14.89 -127.65 -1.90 -33.51 16 28 O -0.97 -41.17 16.93 -127.65 -2.16 -43.33 16 29 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.09 2.02 4.90 -2.39 -0.01 2.01 16 33 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.09 1.54 6.97 -2.39 -0.02 1.52 16 36 H 0.11 2.23 7.71 -2.39 -0.02 2.22 16 37 H 0.06 2.22 6.43 -2.39 -0.02 2.21 16 38 H 0.36 16.67 4.18 -92.71 -0.39 16.28 16 39 H 0.25 16.04 8.31 -92.71 -0.77 15.27 16 40 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 41 H 0.06 1.69 8.14 -2.39 -0.02 1.68 16 42 H 0.03 1.06 6.34 -2.39 -0.02 1.04 16 43 H 0.07 1.02 7.44 -2.39 -0.02 1.00 16 44 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 45 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 46 H 0.05 1.54 7.82 -2.39 -0.02 1.52 16 47 H 0.09 2.01 7.85 -2.39 -0.02 1.99 16 48 H 0.42 9.11 7.18 -96.74 -0.69 8.42 16 49 H 0.43 9.52 8.96 -96.74 -0.87 8.65 16 Total: -1.00 -80.88 389.56 -1.67 -82.55 By element: Atomic # 1 Polarization: 42.63 SS G_CDS: -1.02 Total: 41.60 kcal Atomic # 6 Polarization: -17.46 SS G_CDS: 5.31 Total: -12.16 kcal Atomic # 7 Polarization: -145.29 SS G_CDS: -3.44 Total: -148.73 kcal Atomic # 8 Polarization: -89.63 SS G_CDS: -4.11 Total: -93.74 kcal Atomic # 14 Polarization: 48.76 SS G_CDS: 1.90 Total: 50.67 kcal Atomic # 16 Polarization: 80.12 SS G_CDS: -0.31 Total: 79.81 kcal Total: -80.88 -1.67 -82.55 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755760713.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.316 kcal (2) G-P(sol) polarization free energy of solvation -80.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds