Wall clock time and date at job start Wed Apr 1 2020 04:54:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.46775 * 2 1 4 4 S 1.81400 * 109.46788 * 179.97438 * 3 2 1 5 5 O 1.42105 * 110.54485 * 68.37288 * 4 3 2 6 6 O 1.42098 * 110.54272 * 291.61983 * 4 3 2 7 7 N 1.65600 * 104.45033 * 179.97438 * 4 3 2 8 8 C 1.46503 * 119.99764 * 64.99543 * 7 4 3 9 9 C 1.53124 * 109.52233 * 215.00062 * 8 7 4 10 10 C 1.53031 * 109.27814 * 182.38157 * 9 8 7 11 11 N 1.46847 * 109.52813 * 59.17740 * 10 9 8 12 12 C 1.46894 * 111.00173 * 174.15929 * 11 10 9 13 13 C 1.50697 * 109.47436 * 293.61382 * 12 11 10 14 14 O 1.21284 * 120.00073 * 353.73180 * 13 12 11 15 15 N 1.34778 * 119.99898 * 173.45699 * 13 12 11 16 16 C 1.46497 * 119.99797 * 180.27352 * 15 13 12 17 17 C 1.50705 * 109.47367 * 179.97438 * 16 15 13 18 18 H 1.07998 * 119.99638 * 0.02562 * 17 16 15 19 19 C 1.37874 * 120.00160 * 180.02562 * 17 16 15 20 20 N 1.31516 * 120.00231 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99960 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.47104 * 59.99600 * 21 19 17 23 23 H 1.48496 * 109.47114 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.46740 * 299.99853 * 21 19 17 25 25 C 1.46847 * 111.19736 * 298.26116 * 11 10 9 26 26 C 1.53039 * 109.52415 * 61.74168 * 25 11 10 27 27 H 1.08998 * 109.47246 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.47500 * 300.00320 * 1 2 3 29 29 H 1.09000 * 109.47317 * 60.00390 * 1 2 3 30 30 H 1.08990 * 109.47310 * 239.99354 * 2 1 3 31 31 H 1.09003 * 109.47057 * 119.98887 * 2 1 3 32 32 H 1.08990 * 109.47728 * 59.99610 * 3 2 1 33 33 H 1.09001 * 109.47148 * 299.99147 * 3 2 1 34 34 H 0.97001 * 120.00527 * 245.00187 * 7 4 3 35 35 H 1.08995 * 109.52367 * 335.12994 * 8 7 4 36 36 H 1.08997 * 109.50017 * 62.43689 * 9 8 7 37 37 H 1.09002 * 109.50229 * 302.32151 * 9 8 7 38 38 H 1.09012 * 109.46123 * 299.16194 * 10 9 8 39 39 H 1.09002 * 109.45519 * 179.19183 * 10 9 8 40 40 H 1.09006 * 109.47265 * 173.61116 * 12 11 10 41 41 H 1.08999 * 109.46905 * 53.61730 * 12 11 10 42 42 H 0.97001 * 120.00195 * 0.27492 * 15 13 12 43 43 H 1.09000 * 109.47329 * 300.00167 * 16 15 13 44 44 H 1.09005 * 109.47293 * 60.00199 * 16 15 13 45 45 H 0.96998 * 120.00087 * 180.02562 * 20 19 17 46 46 H 1.08996 * 109.45875 * 181.75103 * 25 11 10 47 47 H 1.08992 * 109.46460 * 301.72429 * 25 11 10 48 48 H 1.08994 * 109.50626 * 180.88030 * 26 25 11 49 49 H 1.08996 * 109.50629 * 60.75326 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 16 3.8539 1.4426 0.0008 5 8 4.3531 0.9520 -1.2359 6 8 4.3520 0.9525 1.2381 7 7 4.2672 3.0462 0.0000 8 6 3.9301 3.8900 1.1492 9 6 3.5837 5.3005 0.6643 10 6 3.2905 6.1924 1.8727 11 7 4.4672 6.2324 2.7503 12 6 4.2724 7.1879 3.8489 13 6 4.2020 8.5864 3.2919 14 8 4.4169 8.7816 2.1143 15 7 3.8948 9.6194 4.1012 16 6 3.8204 10.9781 3.5584 17 6 3.4619 11.9407 4.6612 18 1 3.3056 11.5768 5.6659 19 6 3.3336 13.2859 4.3874 20 7 3.5245 13.7291 3.1640 21 14 2.8899 14.4791 5.7545 22 1 3.9288 14.4261 6.8143 23 1 2.8145 15.8563 5.2043 24 1 1.5743 14.1033 6.3317 25 6 4.7905 4.8961 3.2661 26 6 5.1287 3.9654 2.0992 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8898 31 1 1.8933 -0.5137 0.8901 32 1 1.6766 1.9564 0.8898 33 1 1.6767 1.9563 -0.8901 34 1 4.7323 3.4269 -0.7614 35 1 3.0749 3.4652 1.6747 36 1 2.7047 5.2585 0.0211 37 1 4.4251 5.7100 0.1053 38 1 2.4402 5.7899 2.4235 39 1 3.0575 7.2011 1.5315 40 1 5.1078 7.1159 4.5455 41 1 3.3435 6.9573 4.3705 42 1 3.7229 9.4633 5.0430 43 1 4.7863 11.2536 3.1349 44 1 3.0581 11.0174 2.7803 45 1 3.4346 14.6755 2.9715 46 1 5.6470 4.9632 3.9369 47 1 3.9334 4.4996 3.8102 48 1 5.3534 2.9696 2.4812 49 1 5.9943 4.3540 1.5628 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000030135029.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:54:31 Heat of formation + Delta-G solvation = -119.900671 kcal Electronic energy + Delta-G solvation = -28669.296355 eV Core-core repulsion = 24564.861148 eV Total energy + Delta-G solvation = -4104.435206 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.74609 -38.33232 -37.40251 -36.30391 -35.52642 -35.40756 -34.12578 -32.35900 -31.35916 -30.96743 -28.23567 -28.03429 -26.13178 -23.40685 -23.20339 -22.56729 -22.12918 -20.30141 -19.65805 -19.56975 -17.91223 -17.13546 -17.11389 -16.74495 -16.21155 -15.82354 -15.59577 -15.32123 -15.05951 -14.78517 -14.39276 -14.25742 -14.11851 -13.94425 -13.69200 -13.56721 -13.17679 -13.08026 -12.66432 -12.49300 -12.44766 -12.40323 -12.33887 -12.11821 -12.00518 -11.92399 -11.56083 -11.51313 -11.46950 -11.30499 -11.14992 -11.01606 -10.94956 -10.87841 -10.55801 -10.33004 -9.70204 -9.42855 -9.02859 -8.74356 -8.25263 -7.87103 -6.18357 -4.25458 -0.13230 2.33172 3.23443 3.28442 3.29752 3.36020 3.37727 3.62382 3.76666 3.98257 4.22104 4.24687 4.35211 4.39885 4.52406 4.63523 4.72737 4.75915 4.93770 5.03520 5.06268 5.07837 5.17528 5.18936 5.29598 5.34023 5.38935 5.40927 5.44430 5.51297 5.58758 5.62034 5.64541 5.74331 5.87776 6.02967 6.10872 6.19978 6.62475 6.94175 7.09404 7.30749 7.43689 7.50494 7.65881 7.95667 8.62438 8.77485 9.11460 9.41430 10.91705 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.024390 B = 0.001771 C = 0.001736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.729424 B =15804.468127 C =16123.606191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.117 4.117 3 C -0.632 4.632 4 S 2.608 3.392 5 O -0.960 6.960 6 O -0.953 6.953 7 N -1.113 6.113 8 C 0.152 3.848 9 C -0.119 4.119 10 C 0.054 3.946 11 N -0.519 5.519 12 C 0.036 3.964 13 C 0.497 3.503 14 O -0.538 6.538 15 N -0.716 5.716 16 C 0.252 3.748 17 C -0.544 4.544 18 H 0.062 0.938 19 C 0.063 3.937 20 N -0.885 5.885 21 Si 0.904 3.096 22 H -0.275 1.275 23 H -0.285 1.285 24 H -0.276 1.276 25 C 0.057 3.943 26 C -0.133 4.133 27 H 0.062 0.938 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.131 0.869 33 H 0.135 0.865 34 H 0.420 0.580 35 H 0.077 0.923 36 H 0.072 0.928 37 H 0.084 0.916 38 H 0.028 0.972 39 H 0.100 0.900 40 H 0.100 0.900 41 H 0.057 0.943 42 H 0.389 0.611 43 H 0.026 0.974 44 H 0.025 0.975 45 H 0.266 0.734 46 H 0.081 0.919 47 H 0.034 0.966 48 H 0.083 0.917 49 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.422 -27.223 -3.632 27.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.156 4.156 3 C -0.761 4.761 4 S 2.701 3.299 5 O -0.950 6.950 6 O -0.943 6.943 7 N -0.872 5.872 8 C 0.045 3.955 9 C -0.158 4.158 10 C -0.074 4.074 11 N -0.244 5.244 12 C -0.096 4.096 13 C 0.281 3.719 14 O -0.416 6.416 15 N -0.365 5.365 16 C 0.131 3.869 17 C -0.583 4.583 18 H 0.080 0.920 19 C -0.140 4.140 20 N -0.523 5.523 21 Si 0.731 3.269 22 H -0.201 1.201 23 H -0.211 1.211 24 H -0.201 1.201 25 C -0.072 4.072 26 C -0.172 4.172 27 H 0.081 0.919 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.150 0.850 33 H 0.153 0.847 34 H 0.254 0.746 35 H 0.095 0.905 36 H 0.091 0.909 37 H 0.103 0.897 38 H 0.046 0.954 39 H 0.118 0.882 40 H 0.118 0.882 41 H 0.075 0.925 42 H 0.221 0.779 43 H 0.044 0.956 44 H 0.043 0.957 45 H 0.076 0.924 46 H 0.099 0.901 47 H 0.052 0.948 48 H 0.101 0.899 49 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -3.357 -27.523 -4.742 28.130 hybrid contribution -1.468 1.075 1.371 2.279 sum -4.825 -26.448 -3.371 27.095 Atomic orbital electron populations 1.21722 0.93738 1.02413 1.02546 1.21264 0.98858 0.91831 1.03651 1.30675 1.27465 1.06096 1.11888 1.05050 0.77475 0.72990 0.74415 1.93610 1.77852 1.78385 1.45193 1.93612 1.76729 1.78495 1.45427 1.55664 1.73813 1.29566 1.28142 1.20916 0.97228 0.91826 0.85574 1.21883 1.02939 0.92778 0.98241 1.22186 0.90004 1.01948 0.93294 1.61537 1.38193 1.06405 1.18281 1.22008 1.02109 0.91835 0.93605 1.20310 0.78168 0.86231 0.87180 1.90645 1.49439 1.85224 1.16255 1.46474 1.68924 1.09259 1.11853 1.19068 0.97552 0.75469 0.94788 1.21196 1.49757 0.92267 0.95061 0.91979 1.24954 0.94942 0.98256 0.95880 1.69962 1.47979 1.15276 1.19034 0.86475 0.78991 0.79807 0.81613 1.20069 1.21075 1.20102 1.22099 1.00520 0.88166 0.96377 1.22115 0.98750 1.00050 0.96313 0.91864 0.92152 0.92157 0.90308 0.90272 0.85038 0.84712 0.74551 0.90476 0.90926 0.89686 0.95356 0.88230 0.88166 0.92546 0.77850 0.95561 0.95669 0.92388 0.90089 0.94791 0.89882 0.90077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.66 9.91 37.16 0.37 -0.29 16 2 C -0.12 -0.63 5.94 -26.73 -0.16 -0.79 16 3 C -0.63 -3.22 5.96 37.16 0.22 -3.00 16 4 S 2.61 21.09 5.38 -107.50 -0.58 20.51 16 5 O -0.96 -10.83 18.08 -57.54 -1.04 -11.87 16 6 O -0.95 -10.58 17.20 -57.54 -0.99 -11.57 16 7 N -1.11 -8.20 5.37 -4.78 -0.03 -8.22 16 8 C 0.15 1.25 2.62 -67.80 -0.18 1.08 16 9 C -0.12 -1.14 5.63 -26.65 -0.15 -1.29 16 10 C 0.05 0.66 5.12 -3.84 -0.02 0.64 16 11 N -0.52 -6.69 4.35 -236.12 -1.03 -7.71 16 12 C 0.04 0.48 5.45 -4.98 -0.03 0.45 16 13 C 0.50 9.40 7.36 -10.99 -0.08 9.32 16 14 O -0.54 -12.31 14.71 5.55 0.08 -12.23 16 15 N -0.72 -14.46 5.55 -61.47 -0.34 -14.80 16 16 C 0.25 6.54 5.43 -5.19 -0.03 6.51 16 17 C -0.54 -14.52 9.28 -34.44 -0.32 -14.84 16 18 H 0.06 1.54 7.60 -52.49 -0.40 1.14 16 19 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 20 N -0.89 -25.79 13.29 55.43 0.74 -25.05 16 21 Si 0.90 20.57 29.54 -169.99 -5.02 15.55 16 22 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 23 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 24 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16 25 C 0.06 0.57 5.46 -3.83 -0.02 0.55 16 26 C -0.13 -1.27 5.70 -26.65 -0.15 -1.42 16 27 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 29 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.13 0.49 7.44 -51.93 -0.39 0.11 16 33 H 0.13 0.49 8.14 -51.92 -0.42 0.07 16 34 H 0.42 2.70 8.80 -34.48 -0.30 2.40 16 35 H 0.08 0.50 7.16 -51.93 -0.37 0.13 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.03 0.30 8.14 -51.92 -0.42 -0.12 16 39 H 0.10 1.55 6.06 -51.93 -0.31 1.23 16 40 H 0.10 1.16 7.98 -51.93 -0.41 0.74 16 41 H 0.06 0.64 8.12 -51.93 -0.42 0.22 16 42 H 0.39 6.67 8.32 -40.82 -0.34 6.33 16 43 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 46 H 0.08 0.75 8.01 -51.93 -0.42 0.34 16 47 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 48 H 0.08 0.80 7.52 -51.93 -0.39 0.41 16 49 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 405.24 15.07 6.11 6.11 Total: -1.00 -36.22 405.24 -11.13 -47.34 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: -8.39 Total: 3.41 kcal Atomic # 6 Polarization: -0.81 SS G_CDS: -0.64 Total: -1.46 kcal Atomic # 7 Polarization: -55.14 SS G_CDS: -0.66 Total: -55.79 kcal Atomic # 8 Polarization: -33.73 SS G_CDS: -1.95 Total: -35.68 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Atomic # 16 Polarization: 21.09 SS G_CDS: -0.58 Total: 20.51 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -36.22 -11.13 -47.34 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000030135029.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.558 kcal (2) G-P(sol) polarization free energy of solvation -36.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds