Wall clock time and date at job start Wed Apr 1 2020 04:54:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.46775 * 2 1 4 4 S 1.81400 * 109.46788 * 179.97438 * 3 2 1 5 5 O 1.42105 * 110.54485 * 68.37288 * 4 3 2 6 6 O 1.42098 * 110.54272 * 291.61983 * 4 3 2 7 7 N 1.65600 * 104.45033 * 179.97438 * 4 3 2 8 8 C 1.46503 * 119.99764 * 64.99543 * 7 4 3 9 9 C 1.53124 * 109.52233 * 215.00062 * 8 7 4 10 10 C 1.53031 * 109.27814 * 182.38157 * 9 8 7 11 11 N 1.46847 * 109.52813 * 59.17740 * 10 9 8 12 12 C 1.46894 * 111.00173 * 174.15929 * 11 10 9 13 13 C 1.50697 * 109.47436 * 293.61382 * 12 11 10 14 14 O 1.21284 * 120.00073 * 353.73180 * 13 12 11 15 15 N 1.34778 * 119.99898 * 173.45699 * 13 12 11 16 16 C 1.46497 * 119.99797 * 180.27352 * 15 13 12 17 17 C 1.50705 * 109.47367 * 179.97438 * 16 15 13 18 18 H 1.07998 * 119.99638 * 0.02562 * 17 16 15 19 19 C 1.37874 * 120.00160 * 180.02562 * 17 16 15 20 20 N 1.31516 * 120.00231 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99960 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.47104 * 59.99600 * 21 19 17 23 23 H 1.48496 * 109.47114 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.46740 * 299.99853 * 21 19 17 25 25 C 1.46847 * 111.19736 * 298.26116 * 11 10 9 26 26 C 1.53039 * 109.52415 * 61.74168 * 25 11 10 27 27 H 1.08998 * 109.47246 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.47500 * 300.00320 * 1 2 3 29 29 H 1.09000 * 109.47317 * 60.00390 * 1 2 3 30 30 H 1.08990 * 109.47310 * 239.99354 * 2 1 3 31 31 H 1.09003 * 109.47057 * 119.98887 * 2 1 3 32 32 H 1.08990 * 109.47728 * 59.99610 * 3 2 1 33 33 H 1.09001 * 109.47148 * 299.99147 * 3 2 1 34 34 H 0.97001 * 120.00527 * 245.00187 * 7 4 3 35 35 H 1.08995 * 109.52367 * 335.12994 * 8 7 4 36 36 H 1.08997 * 109.50017 * 62.43689 * 9 8 7 37 37 H 1.09002 * 109.50229 * 302.32151 * 9 8 7 38 38 H 1.09012 * 109.46123 * 299.16194 * 10 9 8 39 39 H 1.09002 * 109.45519 * 179.19183 * 10 9 8 40 40 H 1.09006 * 109.47265 * 173.61116 * 12 11 10 41 41 H 1.08999 * 109.46905 * 53.61730 * 12 11 10 42 42 H 0.97001 * 120.00195 * 0.27492 * 15 13 12 43 43 H 1.09000 * 109.47329 * 300.00167 * 16 15 13 44 44 H 1.09005 * 109.47293 * 60.00199 * 16 15 13 45 45 H 0.96998 * 120.00087 * 180.02562 * 20 19 17 46 46 H 1.08996 * 109.45875 * 181.75103 * 25 11 10 47 47 H 1.08992 * 109.46460 * 301.72429 * 25 11 10 48 48 H 1.08994 * 109.50626 * 180.88030 * 26 25 11 49 49 H 1.08996 * 109.50629 * 60.75326 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 16 3.8539 1.4426 0.0008 5 8 4.3531 0.9520 -1.2359 6 8 4.3520 0.9525 1.2381 7 7 4.2672 3.0462 0.0000 8 6 3.9301 3.8900 1.1492 9 6 3.5837 5.3005 0.6643 10 6 3.2905 6.1924 1.8727 11 7 4.4672 6.2324 2.7503 12 6 4.2724 7.1879 3.8489 13 6 4.2020 8.5864 3.2919 14 8 4.4169 8.7816 2.1143 15 7 3.8948 9.6194 4.1012 16 6 3.8204 10.9781 3.5584 17 6 3.4619 11.9407 4.6612 18 1 3.3056 11.5768 5.6659 19 6 3.3336 13.2859 4.3874 20 7 3.5245 13.7291 3.1640 21 14 2.8899 14.4791 5.7545 22 1 3.9288 14.4261 6.8143 23 1 2.8145 15.8563 5.2043 24 1 1.5743 14.1033 6.3317 25 6 4.7905 4.8961 3.2661 26 6 5.1287 3.9654 2.0992 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8898 31 1 1.8933 -0.5137 0.8901 32 1 1.6766 1.9564 0.8898 33 1 1.6767 1.9563 -0.8901 34 1 4.7323 3.4269 -0.7614 35 1 3.0749 3.4652 1.6747 36 1 2.7047 5.2585 0.0211 37 1 4.4251 5.7100 0.1053 38 1 2.4402 5.7899 2.4235 39 1 3.0575 7.2011 1.5315 40 1 5.1078 7.1159 4.5455 41 1 3.3435 6.9573 4.3705 42 1 3.7229 9.4633 5.0430 43 1 4.7863 11.2536 3.1349 44 1 3.0581 11.0174 2.7803 45 1 3.4346 14.6755 2.9715 46 1 5.6470 4.9632 3.9369 47 1 3.9334 4.4996 3.8102 48 1 5.3534 2.9696 2.4812 49 1 5.9943 4.3540 1.5628 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000030135029.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:54:30 Heat of formation + Delta-G solvation = -150.476655 kcal Electronic energy + Delta-G solvation = -28670.622229 eV Core-core repulsion = 24564.861148 eV Total energy + Delta-G solvation = -4105.761081 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.89978 -39.56825 -38.16072 -37.04448 -36.45306 -35.93371 -35.79213 -34.31159 -32.25315 -31.77603 -29.72105 -28.61849 -27.52518 -24.75099 -24.13081 -23.50987 -22.95295 -21.29068 -21.02490 -20.23517 -18.88493 -18.56365 -17.84964 -17.43327 -17.36061 -17.18452 -16.65593 -16.52991 -16.27540 -15.79496 -15.59353 -15.39199 -15.05412 -14.76349 -14.55492 -14.40670 -14.17796 -14.04208 -13.82539 -13.61431 -13.45606 -13.25745 -13.20615 -13.12966 -13.01665 -12.90547 -12.81792 -12.62802 -12.38430 -12.24769 -12.22354 -12.10413 -11.95617 -11.83448 -11.57795 -11.49055 -11.35601 -10.77178 -10.59335 -10.33888 -9.75692 -9.17827 -8.27637 -6.44164 -0.73820 1.43899 1.47793 1.55965 1.71948 1.86500 2.30166 2.49786 2.77972 3.07063 3.11086 3.22137 3.54917 3.67959 3.83092 3.87862 3.96571 4.04669 4.19353 4.20532 4.30322 4.37831 4.40884 4.45221 4.53928 4.55440 4.68756 4.70403 4.75309 4.89051 4.96885 5.03700 5.06962 5.08151 5.14471 5.23855 5.26307 5.27549 5.32793 5.44041 5.51848 5.73841 5.87512 6.00372 6.07289 6.23335 6.67482 7.01023 7.25701 7.59330 8.84138 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.024390 B = 0.001771 C = 0.001736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.729424 B =15804.468127 C =16123.606191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.130 4.130 3 C -0.612 4.612 4 S 2.613 3.387 5 O -0.998 6.998 6 O -0.987 6.987 7 N -1.111 6.111 8 C 0.154 3.846 9 C -0.113 4.113 10 C 0.053 3.947 11 N -0.544 5.544 12 C 0.050 3.950 13 C 0.493 3.507 14 O -0.584 6.584 15 N -0.712 5.712 16 C 0.270 3.730 17 C -0.556 4.556 18 H 0.084 0.916 19 C 0.002 3.998 20 N -0.931 5.931 21 Si 0.984 3.016 22 H -0.263 1.263 23 H -0.287 1.287 24 H -0.261 1.261 25 C 0.059 3.941 26 C -0.135 4.135 27 H 0.068 0.932 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.155 0.845 33 H 0.155 0.845 34 H 0.422 0.578 35 H 0.105 0.895 36 H 0.093 0.907 37 H 0.063 0.937 38 H 0.052 0.948 39 H 0.058 0.942 40 H 0.125 0.875 41 H 0.088 0.912 42 H 0.408 0.592 43 H -0.016 1.016 44 H -0.014 1.014 45 H 0.268 0.732 46 H 0.088 0.912 47 H 0.056 0.944 48 H 0.084 0.916 49 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.206 -28.587 -1.245 29.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.169 4.169 3 C -0.744 4.744 4 S 2.710 3.290 5 O -0.989 6.989 6 O -0.977 6.977 7 N -0.869 5.869 8 C 0.047 3.953 9 C -0.153 4.153 10 C -0.075 4.075 11 N -0.269 5.269 12 C -0.081 4.081 13 C 0.280 3.720 14 O -0.464 6.464 15 N -0.363 5.363 16 C 0.147 3.853 17 C -0.594 4.594 18 H 0.102 0.898 19 C -0.197 4.197 20 N -0.570 5.570 21 Si 0.807 3.193 22 H -0.187 1.187 23 H -0.212 1.212 24 H -0.186 1.186 25 C -0.068 4.068 26 C -0.174 4.174 27 H 0.087 0.913 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.096 0.904 31 H 0.099 0.901 32 H 0.173 0.827 33 H 0.173 0.827 34 H 0.258 0.742 35 H 0.123 0.877 36 H 0.111 0.889 37 H 0.082 0.918 38 H 0.070 0.930 39 H 0.076 0.924 40 H 0.143 0.857 41 H 0.106 0.894 42 H 0.243 0.757 43 H 0.002 0.998 44 H 0.004 0.996 45 H 0.077 0.923 46 H 0.107 0.893 47 H 0.074 0.926 48 H 0.103 0.897 49 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -5.096 -28.940 -2.323 29.476 hybrid contribution -0.924 1.443 0.550 1.800 sum -6.020 -27.497 -1.773 28.204 Atomic orbital electron populations 1.21752 0.92799 1.03019 1.03007 1.21426 0.99690 0.91886 1.03919 1.30505 1.23046 1.06753 1.14131 1.04725 0.78891 0.72516 0.72888 1.93559 1.79706 1.79119 1.46495 1.93564 1.78598 1.79175 1.46374 1.55495 1.74223 1.29035 1.28112 1.20914 0.97635 0.91182 0.85564 1.21816 1.03034 0.93038 0.97380 1.22126 0.90780 1.00260 0.94375 1.61465 1.38940 1.07892 1.18640 1.21927 1.04697 0.87667 0.93806 1.21416 0.76097 0.88104 0.86396 1.90629 1.51000 1.86238 1.18548 1.46207 1.69547 1.07540 1.12977 1.18465 0.93914 0.78825 0.94142 1.21612 1.49263 0.92642 0.95891 0.89778 1.26072 0.94548 1.00554 0.98535 1.70134 1.49286 1.15789 1.21745 0.85217 0.79385 0.76591 0.78070 1.18738 1.21240 1.18572 1.22150 1.01681 0.86432 0.96585 1.22122 0.98870 0.99859 0.96558 0.91334 0.91619 0.91759 0.90351 0.90074 0.82742 0.82667 0.74241 0.87745 0.88895 0.91838 0.92981 0.92394 0.85677 0.89409 0.75699 0.99834 0.99592 0.92318 0.89334 0.92564 0.89748 0.91679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.91 71.98 0.71 -0.23 16 2 C -0.13 -1.10 5.94 30.60 0.18 -0.92 16 3 C -0.61 -4.44 5.96 71.98 0.43 -4.01 16 4 S 2.61 39.21 5.38 -56.49 -0.30 38.90 16 5 O -1.00 -22.40 18.08 -127.65 -2.31 -24.71 16 6 O -0.99 -20.98 17.20 -127.65 -2.20 -23.18 16 7 N -1.11 -15.02 5.37 -169.04 -0.91 -15.93 16 8 C 0.15 2.23 2.62 45.07 0.12 2.35 16 9 C -0.11 -2.04 5.63 30.65 0.17 -1.87 16 10 C 0.05 1.23 5.12 86.32 0.44 1.67 16 11 N -0.54 -13.17 4.35 -900.95 -3.92 -17.08 16 12 C 0.05 1.22 5.45 85.56 0.47 1.68 16 13 C 0.49 18.77 7.36 87.66 0.65 19.42 16 14 O -0.58 -28.01 14.71 -3.04 -0.04 -28.06 16 15 N -0.71 -28.94 5.55 -466.78 -2.59 -31.53 16 16 C 0.27 14.60 5.43 85.64 0.46 15.06 16 17 C -0.56 -29.83 9.28 25.60 0.24 -29.59 16 18 H 0.08 4.03 7.60 -2.91 -0.02 4.01 16 19 C 0.00 0.14 5.46 84.65 0.46 0.60 16 20 N -0.93 -55.87 13.29 21.45 0.28 -55.59 16 21 Si 0.98 41.77 29.54 68.60 2.03 43.80 16 22 H -0.26 -10.57 7.11 99.48 0.71 -9.87 16 23 H -0.29 -12.15 7.11 99.48 0.71 -11.44 16 24 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 25 C 0.06 1.02 5.46 86.33 0.47 1.49 16 26 C -0.13 -2.37 5.70 30.65 0.17 -2.19 16 27 H 0.07 0.37 8.14 -2.39 -0.02 0.35 16 28 H 0.06 0.36 8.14 -2.38 -0.02 0.34 16 29 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 30 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.15 0.49 7.44 -2.40 -0.02 0.47 16 33 H 0.16 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.42 5.30 8.80 -96.74 -0.85 4.45 16 35 H 0.10 0.96 7.16 -2.39 -0.02 0.94 16 36 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.05 0.94 8.14 -2.38 -0.02 0.92 16 39 H 0.06 1.85 6.06 -2.39 -0.01 1.83 16 40 H 0.13 2.48 7.98 -2.38 -0.02 2.46 16 41 H 0.09 1.65 8.12 -2.39 -0.02 1.63 16 42 H 0.41 13.40 8.32 -92.71 -0.77 12.63 16 43 H -0.02 -1.01 8.14 -2.39 -0.02 -1.02 16 44 H -0.01 -0.85 8.14 -2.38 -0.02 -0.87 16 45 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 46 H 0.09 1.39 8.01 -2.39 -0.02 1.37 16 47 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 48 H 0.08 1.49 7.52 -2.39 -0.02 1.47 16 49 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -83.10 405.24 -5.65 -88.75 By element: Atomic # 1 Polarization: 21.83 SS G_CDS: -0.67 Total: 21.16 kcal Atomic # 6 Polarization: -1.51 SS G_CDS: 4.98 Total: 3.46 kcal Atomic # 7 Polarization: -113.00 SS G_CDS: -7.13 Total: -120.13 kcal Atomic # 8 Polarization: -71.39 SS G_CDS: -4.55 Total: -75.94 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 2.03 Total: 43.80 kcal Atomic # 16 Polarization: 39.21 SS G_CDS: -0.30 Total: 38.90 kcal Total: -83.10 -5.65 -88.75 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000030135029.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.730 kcal (2) G-P(sol) polarization free energy of solvation -83.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds