Wall clock time and date at job start Wed Apr 1 2020 04:11:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.46958 * 2 1 4 4 N 1.46503 * 109.47079 * 180.02562 * 3 2 1 5 5 C 1.34778 * 120.00106 * 180.02562 * 4 3 2 6 6 O 1.21284 * 119.99904 * 359.97438 * 5 4 3 7 7 C 1.50697 * 120.00174 * 179.97438 * 5 4 3 8 8 C 1.53038 * 109.46077 * 179.97438 * 7 5 4 9 9 C 1.53189 * 109.31471 * 178.62665 * 8 7 5 10 10 N 1.46933 * 108.77260 * 54.63744 * 9 8 7 11 11 S 1.65595 * 120.62849 * 126.37086 * 10 9 8 12 12 O 1.42105 * 106.40149 * 203.53935 * 11 10 9 13 13 O 1.42098 * 106.40317 * 336.45808 * 11 10 9 14 14 N 1.65606 * 107.22013 * 90.00117 * 11 10 9 15 15 C 1.46489 * 120.00129 * 89.99663 * 14 11 10 16 16 C 1.46504 * 119.99819 * 269.99910 * 14 11 10 17 17 C 1.50693 * 109.47172 * 94.99586 * 16 14 11 18 18 H 1.08000 * 119.99929 * 0.02562 * 17 16 14 19 19 C 1.37874 * 120.00099 * 179.97438 * 17 16 14 20 20 N 1.31521 * 120.00341 * 180.02562 * 19 17 16 21 21 Si 1.86797 * 120.00093 * 0.02562 * 19 17 16 22 22 H 1.48499 * 109.47205 * 89.99726 * 21 19 17 23 23 H 1.48495 * 109.47322 * 209.99992 * 21 19 17 24 24 H 1.48502 * 109.47122 * 329.99662 * 21 19 17 25 25 C 1.46925 * 118.73831 * 306.64055 * 10 9 8 26 26 C 1.52761 * 109.00629 * 53.31483 * 25 10 9 27 27 H 1.09004 * 109.47293 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47187 * 299.99737 * 1 2 3 29 29 H 1.09002 * 109.47194 * 60.00219 * 1 2 3 30 30 H 1.08996 * 109.47187 * 240.00263 * 2 1 3 31 31 H 1.08997 * 109.47228 * 120.00275 * 2 1 3 32 32 H 1.09005 * 109.47089 * 60.00309 * 3 2 1 33 33 H 1.08997 * 109.47376 * 300.00185 * 3 2 1 34 34 H 0.96999 * 119.99743 * 359.97438 * 4 3 2 35 35 H 1.08995 * 109.46023 * 299.97208 * 7 5 4 36 36 H 1.08998 * 109.49523 * 58.67906 * 8 7 5 37 37 H 1.08998 * 109.50031 * 298.57950 * 8 7 5 38 38 H 1.09001 * 109.58785 * 294.85560 * 9 8 7 39 39 H 1.09000 * 109.70656 * 174.49247 * 9 8 7 40 40 H 1.08998 * 109.47302 * 90.00098 * 15 14 11 41 41 H 1.09005 * 109.47350 * 210.00090 * 15 14 11 42 42 H 1.08996 * 109.47412 * 330.00152 * 15 14 11 43 43 H 1.08996 * 109.47155 * 215.00149 * 16 14 11 44 44 H 1.09007 * 109.47086 * 334.99657 * 16 14 11 45 45 H 0.96998 * 120.00080 * 180.02562 * 20 19 17 46 46 H 1.08997 * 109.58679 * 173.14303 * 25 10 9 47 47 H 1.09000 * 109.58887 * 293.57261 * 25 10 9 48 48 H 1.09001 * 109.56870 * 185.55054 * 26 25 10 49 49 H 1.08996 * 109.36683 * 65.49385 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4426 -0.0006 5 6 4.1788 2.6098 -0.0002 6 8 3.5724 3.6601 0.0002 7 6 5.6858 2.6098 -0.0003 8 6 6.1956 4.0528 -0.0004 9 6 7.7271 4.0491 0.0342 10 7 8.2233 3.2337 -1.0828 11 16 9.3209 3.8530 -2.1570 12 8 9.1793 3.1005 -3.3542 13 8 9.1791 5.2660 -2.1059 14 7 10.8303 3.5128 -1.5667 15 6 11.4979 2.2632 -1.9392 16 6 11.4979 4.4615 -0.6720 17 6 11.2421 4.0669 0.7597 18 1 10.6427 3.1962 0.9810 19 6 11.7743 4.8167 1.7871 20 7 11.5515 4.4720 3.0366 21 14 12.8118 6.3222 1.4044 22 1 11.9357 7.5180 1.3175 23 1 13.8138 6.5199 2.4823 24 1 13.5107 6.1254 0.1089 25 6 7.7226 1.8605 -1.2321 26 6 6.1954 1.8869 -1.2493 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.6766 1.9564 0.8901 33 1 1.6766 1.9564 -0.8899 34 1 3.9899 0.6025 -0.0006 35 1 6.0490 2.0961 0.8898 36 1 5.8132 4.5738 0.8773 37 1 5.8533 4.5595 -0.9027 38 1 8.0703 3.6241 0.9775 39 1 8.0994 5.0688 -0.0641 40 1 12.0863 2.4210 -2.8430 41 1 12.1546 1.9465 -1.1288 42 1 10.7497 1.4922 -2.1228 43 1 12.5704 4.4507 -0.8658 44 1 11.1070 5.4637 -0.8480 45 1 11.9256 4.9998 3.7594 46 1 8.0899 1.4372 -2.1670 47 1 8.0654 1.2534 -0.3942 48 1 5.8127 0.8664 -1.2605 49 1 5.8530 2.4140 -2.1398 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045805525.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:11:30 Heat of formation + Delta-G solvation = -124.842791 kcal Electronic energy + Delta-G solvation = -30154.543913 eV Core-core repulsion = 26049.894400 eV Total energy + Delta-G solvation = -4104.649513 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.20565 -37.77853 -36.80237 -35.99513 -35.63344 -35.29791 -33.16146 -32.46183 -32.13819 -30.90246 -28.41979 -26.96976 -25.21234 -24.69971 -23.17103 -22.02212 -21.90419 -21.13108 -19.91483 -18.39612 -17.66042 -17.05944 -16.84463 -16.63818 -16.25532 -16.01503 -15.75174 -14.84457 -14.76320 -14.36816 -14.25972 -14.17402 -13.70929 -13.43685 -13.36901 -13.27667 -13.08721 -12.61619 -12.55812 -12.46466 -12.41648 -12.36597 -12.05372 -11.84362 -11.54554 -11.52690 -11.39552 -11.30525 -11.25184 -11.23178 -11.02839 -10.80162 -10.57647 -10.51830 -10.39916 -10.22718 -9.75683 -9.61505 -9.25702 -8.70704 -8.65832 -8.10639 -6.18309 -4.18642 1.17005 2.58536 3.01174 3.25507 3.31836 3.35924 3.40172 4.02919 4.33816 4.43681 4.55869 4.57091 4.68631 4.74714 4.83303 4.90073 5.14836 5.15573 5.22628 5.24385 5.28612 5.36496 5.42228 5.47351 5.54952 5.60772 5.64133 5.72184 5.73914 5.81409 5.87550 5.98222 6.05248 6.11084 6.12684 6.19619 6.26190 6.41177 6.52181 6.58281 6.80590 6.90573 7.10172 7.32856 7.38365 7.52584 8.13356 8.38834 8.84951 9.42918 10.93829 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.015499 B = 0.002928 C = 0.002681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1806.082996 B = 9562.002800 C =10440.263637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.136 4.136 3 C 0.117 3.883 4 N -0.736 5.736 5 C 0.518 3.482 6 O -0.538 6.538 7 C -0.105 4.105 8 C -0.110 4.110 9 C 0.127 3.873 10 N -1.001 6.001 11 S 2.788 3.212 12 O -0.997 6.997 13 O -0.978 6.978 14 N -0.993 5.993 15 C 0.106 3.894 16 C 0.213 3.787 17 C -0.540 4.540 18 H 0.082 0.918 19 C 0.077 3.923 20 N -0.893 5.893 21 Si 0.868 3.132 22 H -0.271 1.271 23 H -0.285 1.285 24 H -0.264 1.264 25 C 0.123 3.877 26 C -0.120 4.120 27 H 0.059 0.941 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.400 0.600 35 H 0.102 0.898 36 H 0.081 0.919 37 H 0.070 0.930 38 H 0.080 0.920 39 H 0.099 0.901 40 H 0.044 0.956 41 H 0.075 0.925 42 H 0.054 0.946 43 H 0.035 0.965 44 H 0.042 0.958 45 H 0.265 0.735 46 H 0.091 0.909 47 H 0.070 0.930 48 H 0.074 0.926 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.494 -11.465 -5.823 19.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.174 4.174 3 C -0.007 4.007 4 N -0.389 5.389 5 C 0.305 3.695 6 O -0.414 6.414 7 C -0.126 4.126 8 C -0.150 4.150 9 C 0.001 3.999 10 N -0.840 5.840 11 S 2.797 3.203 12 O -0.981 6.981 13 O -0.962 6.962 14 N -0.833 5.833 15 C -0.040 4.040 16 C 0.089 3.911 17 C -0.579 4.579 18 H 0.100 0.900 19 C -0.127 4.127 20 N -0.531 5.531 21 Si 0.694 3.306 22 H -0.197 1.197 23 H -0.211 1.211 24 H -0.189 1.189 25 C -0.003 4.003 26 C -0.159 4.159 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.235 0.765 35 H 0.120 0.880 36 H 0.099 0.901 37 H 0.089 0.911 38 H 0.098 0.902 39 H 0.117 0.883 40 H 0.063 0.937 41 H 0.094 0.906 42 H 0.073 0.927 43 H 0.053 0.947 44 H 0.060 0.940 45 H 0.075 0.925 46 H 0.109 0.891 47 H 0.089 0.911 48 H 0.093 0.907 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -15.065 -10.166 -6.441 19.281 hybrid contribution 0.877 0.051 0.517 1.020 sum -14.187 -10.114 -5.924 18.403 Atomic orbital electron populations 1.21679 0.94609 1.02129 1.02352 1.21738 0.96972 0.95918 1.02767 1.21383 0.79910 0.97002 1.02371 1.46072 1.07177 1.08964 1.76648 1.20847 0.90309 0.83308 0.75012 1.90699 1.70499 1.31372 1.48784 1.21335 0.90465 1.00069 1.00736 1.21729 0.95663 0.93808 1.03800 1.21426 0.92368 0.96388 0.89678 1.58083 1.59086 1.22055 1.44801 1.01675 0.72510 0.73159 0.72921 1.93527 1.86603 1.73681 1.44271 1.93556 1.85942 1.29747 1.86964 1.57477 1.33627 1.29068 1.63160 1.21234 0.97831 0.84877 1.00077 1.19611 0.93896 0.88116 0.89471 1.21426 1.34090 1.14001 0.88341 0.90042 1.24841 0.95696 0.97235 0.94892 1.69883 1.44953 1.39619 0.98642 0.86972 0.80940 0.84101 0.78546 1.19655 1.21069 1.18881 1.21226 0.93158 0.83220 1.02713 1.21792 0.96658 1.00164 0.97334 0.92194 0.92343 0.92362 0.91273 0.91262 0.91602 0.91630 0.76535 0.87951 0.90069 0.91083 0.90210 0.88316 0.93724 0.90591 0.92696 0.94668 0.93969 0.92494 0.89105 0.91140 0.90722 0.90960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.76 9.91 37.15 0.37 -0.39 16 2 C -0.14 -0.75 6.05 -26.73 -0.16 -0.91 16 3 C 0.12 0.97 5.67 -4.04 -0.02 0.95 16 4 N -0.74 -6.57 5.44 -60.29 -0.33 -6.90 16 5 C 0.52 6.47 7.15 -10.99 -0.08 6.40 16 6 O -0.54 -8.90 15.98 5.55 0.09 -8.81 16 7 C -0.10 -1.23 2.49 -91.73 -0.23 -1.46 16 8 C -0.11 -1.61 4.65 -26.61 -0.12 -1.73 16 9 C 0.13 2.11 6.48 -3.71 -0.02 2.09 16 10 N -1.00 -16.35 3.35 -113.76 -0.38 -16.73 16 11 S 2.79 53.76 6.11 -107.50 -0.66 53.10 16 12 O -1.00 -19.47 15.79 -57.17 -0.90 -20.37 16 13 O -0.98 -21.80 15.28 -57.17 -0.87 -22.67 16 14 N -0.99 -19.60 3.23 -123.06 -0.40 -20.00 16 15 C 0.11 1.73 10.31 59.84 0.62 2.34 16 16 C 0.21 4.87 4.48 -5.19 -0.02 4.84 16 17 C -0.54 -13.81 9.94 -34.44 -0.34 -14.16 16 18 H 0.08 2.20 8.06 -52.49 -0.42 1.77 16 19 C 0.08 2.06 5.47 -17.82 -0.10 1.97 16 20 N -0.89 -25.40 13.96 55.43 0.77 -24.63 16 21 Si 0.87 20.50 27.47 -169.99 -4.67 15.83 16 22 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 24 H -0.26 -5.98 6.54 56.52 0.37 -5.61 16 25 C 0.12 1.54 6.45 -3.93 -0.03 1.52 16 26 C -0.12 -1.27 5.25 -26.83 -0.14 -1.41 16 27 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.40 2.47 7.87 -40.82 -0.32 2.14 16 35 H 0.10 1.07 8.14 -51.93 -0.42 0.64 16 36 H 0.08 1.18 8.07 -51.93 -0.42 0.76 16 37 H 0.07 1.11 8.13 -51.93 -0.42 0.69 16 38 H 0.08 1.38 8.14 -51.93 -0.42 0.95 16 39 H 0.10 1.85 6.92 -51.93 -0.36 1.49 16 40 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.08 1.23 8.07 -51.93 -0.42 0.81 16 42 H 0.05 0.77 7.79 -51.93 -0.40 0.36 16 43 H 0.04 0.79 7.17 -51.93 -0.37 0.42 16 44 H 0.04 1.01 6.34 -51.92 -0.33 0.68 16 45 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 46 H 0.09 1.11 6.91 -51.93 -0.36 0.75 16 47 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 48 H 0.07 0.54 7.52 -51.93 -0.39 0.15 16 49 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 LS Contribution 400.51 15.07 6.04 6.04 Total: -1.00 -33.65 400.51 -10.05 -43.71 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: -8.46 Total: 1.40 kcal Atomic # 6 Polarization: 0.32 SS G_CDS: -0.28 Total: 0.04 kcal Atomic # 7 Polarization: -67.92 SS G_CDS: -0.33 Total: -68.25 kcal Atomic # 8 Polarization: -50.16 SS G_CDS: -1.69 Total: -51.85 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -4.67 Total: 15.83 kcal Atomic # 16 Polarization: 53.76 SS G_CDS: -0.66 Total: 53.10 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -33.65 -10.05 -43.71 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045805525.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.136 kcal (2) G-P(sol) polarization free energy of solvation -33.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds