Wall clock time and date at job start Wed Apr 1 2020 04:11:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.46958 * 2 1 4 4 N 1.46503 * 109.47079 * 180.02562 * 3 2 1 5 5 C 1.34778 * 120.00106 * 180.02562 * 4 3 2 6 6 O 1.21284 * 119.99904 * 359.97438 * 5 4 3 7 7 C 1.50697 * 120.00174 * 179.97438 * 5 4 3 8 8 C 1.53038 * 109.46077 * 179.97438 * 7 5 4 9 9 C 1.53189 * 109.31471 * 178.62665 * 8 7 5 10 10 N 1.46933 * 108.77260 * 54.63744 * 9 8 7 11 11 S 1.65595 * 120.62849 * 126.37086 * 10 9 8 12 12 O 1.42105 * 106.40149 * 203.53935 * 11 10 9 13 13 O 1.42098 * 106.40317 * 336.45808 * 11 10 9 14 14 N 1.65606 * 107.22013 * 90.00117 * 11 10 9 15 15 C 1.46489 * 120.00129 * 89.99663 * 14 11 10 16 16 C 1.46504 * 119.99819 * 269.99910 * 14 11 10 17 17 C 1.50693 * 109.47172 * 94.99586 * 16 14 11 18 18 H 1.08000 * 119.99929 * 0.02562 * 17 16 14 19 19 C 1.37874 * 120.00099 * 179.97438 * 17 16 14 20 20 N 1.31521 * 120.00341 * 180.02562 * 19 17 16 21 21 Si 1.86797 * 120.00093 * 0.02562 * 19 17 16 22 22 H 1.48499 * 109.47205 * 89.99726 * 21 19 17 23 23 H 1.48495 * 109.47322 * 209.99992 * 21 19 17 24 24 H 1.48502 * 109.47122 * 329.99662 * 21 19 17 25 25 C 1.46925 * 118.73831 * 306.64055 * 10 9 8 26 26 C 1.52761 * 109.00629 * 53.31483 * 25 10 9 27 27 H 1.09004 * 109.47293 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47187 * 299.99737 * 1 2 3 29 29 H 1.09002 * 109.47194 * 60.00219 * 1 2 3 30 30 H 1.08996 * 109.47187 * 240.00263 * 2 1 3 31 31 H 1.08997 * 109.47228 * 120.00275 * 2 1 3 32 32 H 1.09005 * 109.47089 * 60.00309 * 3 2 1 33 33 H 1.08997 * 109.47376 * 300.00185 * 3 2 1 34 34 H 0.96999 * 119.99743 * 359.97438 * 4 3 2 35 35 H 1.08995 * 109.46023 * 299.97208 * 7 5 4 36 36 H 1.08998 * 109.49523 * 58.67906 * 8 7 5 37 37 H 1.08998 * 109.50031 * 298.57950 * 8 7 5 38 38 H 1.09001 * 109.58785 * 294.85560 * 9 8 7 39 39 H 1.09000 * 109.70656 * 174.49247 * 9 8 7 40 40 H 1.08998 * 109.47302 * 90.00098 * 15 14 11 41 41 H 1.09005 * 109.47350 * 210.00090 * 15 14 11 42 42 H 1.08996 * 109.47412 * 330.00152 * 15 14 11 43 43 H 1.08996 * 109.47155 * 215.00149 * 16 14 11 44 44 H 1.09007 * 109.47086 * 334.99657 * 16 14 11 45 45 H 0.96998 * 120.00080 * 180.02562 * 20 19 17 46 46 H 1.08997 * 109.58679 * 173.14303 * 25 10 9 47 47 H 1.09000 * 109.58887 * 293.57261 * 25 10 9 48 48 H 1.09001 * 109.56870 * 185.55054 * 26 25 10 49 49 H 1.08996 * 109.36683 * 65.49385 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4426 -0.0006 5 6 4.1788 2.6098 -0.0002 6 8 3.5724 3.6601 0.0002 7 6 5.6858 2.6098 -0.0003 8 6 6.1956 4.0528 -0.0004 9 6 7.7271 4.0491 0.0342 10 7 8.2233 3.2337 -1.0828 11 16 9.3209 3.8530 -2.1570 12 8 9.1793 3.1005 -3.3542 13 8 9.1791 5.2660 -2.1059 14 7 10.8303 3.5128 -1.5667 15 6 11.4979 2.2632 -1.9392 16 6 11.4979 4.4615 -0.6720 17 6 11.2421 4.0669 0.7597 18 1 10.6427 3.1962 0.9810 19 6 11.7743 4.8167 1.7871 20 7 11.5515 4.4720 3.0366 21 14 12.8118 6.3222 1.4044 22 1 11.9357 7.5180 1.3175 23 1 13.8138 6.5199 2.4823 24 1 13.5107 6.1254 0.1089 25 6 7.7226 1.8605 -1.2321 26 6 6.1954 1.8869 -1.2493 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.6766 1.9564 0.8901 33 1 1.6766 1.9564 -0.8899 34 1 3.9899 0.6025 -0.0006 35 1 6.0490 2.0961 0.8898 36 1 5.8132 4.5738 0.8773 37 1 5.8533 4.5595 -0.9027 38 1 8.0703 3.6241 0.9775 39 1 8.0994 5.0688 -0.0641 40 1 12.0863 2.4210 -2.8430 41 1 12.1546 1.9465 -1.1288 42 1 10.7497 1.4922 -2.1228 43 1 12.5704 4.4507 -0.8658 44 1 11.1070 5.4637 -0.8480 45 1 11.9256 4.9998 3.7594 46 1 8.0899 1.4372 -2.1670 47 1 8.0654 1.2534 -0.3942 48 1 5.8127 0.8664 -1.2605 49 1 5.8530 2.4140 -2.1398 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000045805525.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:11:29 Heat of formation + Delta-G solvation = -149.925229 kcal Electronic energy + Delta-G solvation = -30155.631569 eV Core-core repulsion = 26049.894400 eV Total energy + Delta-G solvation = -4105.737169 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.20712 -38.88718 -38.40011 -37.26601 -36.91153 -36.76733 -34.45349 -34.07772 -33.05282 -32.02319 -30.21695 -27.75401 -26.75334 -25.70240 -24.27085 -23.74595 -22.57179 -22.22323 -20.94344 -19.79877 -19.20874 -18.69114 -18.36487 -17.87989 -17.34628 -17.05578 -16.71208 -16.39810 -15.84637 -15.71394 -15.38816 -15.30169 -15.14175 -14.67669 -14.58984 -14.40659 -14.23876 -14.06938 -13.84617 -13.60466 -13.49263 -13.43839 -13.33221 -13.14736 -13.01324 -12.98706 -12.85658 -12.51774 -12.37089 -12.27953 -12.17758 -12.03362 -11.98633 -11.73852 -11.64365 -11.61972 -11.60406 -10.81721 -10.73828 -10.10436 -9.98800 -9.70538 -8.25490 -6.28048 -0.34169 1.37524 1.42175 1.47757 1.60765 1.93440 2.20252 2.36801 2.53338 3.09519 3.33299 3.57262 3.71618 3.78010 3.94620 4.01599 4.08907 4.14385 4.17075 4.34768 4.38702 4.42152 4.62892 4.67082 4.70507 4.74396 4.76330 4.76875 4.79588 4.86689 4.90498 4.93912 4.97486 5.04637 5.12838 5.16482 5.24664 5.25956 5.31448 5.35840 5.38775 5.49412 5.50827 5.61337 5.88401 6.34930 6.55325 6.76831 7.25336 7.35931 8.88905 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.015499 B = 0.002928 C = 0.002681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1806.082996 B = 9562.002800 C =10440.263637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.126 4.126 3 C 0.115 3.885 4 N -0.717 5.717 5 C 0.518 3.482 6 O -0.586 6.586 7 C -0.099 4.099 8 C -0.105 4.105 9 C 0.134 3.866 10 N -1.000 6.000 11 S 2.795 3.205 12 O -0.998 6.998 13 O -1.014 7.014 14 N -0.999 5.999 15 C 0.097 3.903 16 C 0.218 3.782 17 C -0.528 4.528 18 H 0.061 0.939 19 C 0.026 3.974 20 N -0.933 5.933 21 Si 0.915 3.085 22 H -0.275 1.275 23 H -0.281 1.281 24 H -0.246 1.246 25 C 0.113 3.887 26 C -0.114 4.114 27 H 0.071 0.929 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.418 0.582 35 H 0.123 0.877 36 H 0.075 0.925 37 H 0.055 0.945 38 H 0.072 0.928 39 H 0.069 0.931 40 H 0.061 0.939 41 H 0.074 0.926 42 H 0.078 0.922 43 H 0.045 0.955 44 H 0.031 0.969 45 H 0.266 0.734 46 H 0.100 0.900 47 H 0.090 0.910 48 H 0.120 0.880 49 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.685 -13.871 -6.733 21.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.164 4.164 3 C -0.009 4.009 4 N -0.369 5.369 5 C 0.305 3.695 6 O -0.466 6.466 7 C -0.121 4.121 8 C -0.145 4.145 9 C 0.008 3.992 10 N -0.841 5.841 11 S 2.805 3.195 12 O -0.982 6.982 13 O -0.998 6.998 14 N -0.839 5.839 15 C -0.049 4.049 16 C 0.093 3.907 17 C -0.567 4.567 18 H 0.079 0.921 19 C -0.173 4.173 20 N -0.573 5.573 21 Si 0.740 3.260 22 H -0.200 1.200 23 H -0.207 1.207 24 H -0.170 1.170 25 C -0.012 4.012 26 C -0.153 4.153 27 H 0.090 0.910 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.099 0.901 31 H 0.098 0.902 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.255 0.745 35 H 0.141 0.859 36 H 0.094 0.906 37 H 0.074 0.926 38 H 0.090 0.910 39 H 0.088 0.912 40 H 0.080 0.920 41 H 0.093 0.907 42 H 0.097 0.903 43 H 0.062 0.938 44 H 0.049 0.951 45 H 0.075 0.925 46 H 0.118 0.882 47 H 0.108 0.892 48 H 0.138 0.862 49 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -15.242 -12.647 -7.389 21.139 hybrid contribution 0.853 0.703 0.785 1.356 sum -14.389 -11.944 -6.604 19.832 Atomic orbital electron populations 1.21699 0.94370 1.02793 1.02072 1.21686 0.97073 0.93779 1.03843 1.21459 0.79311 0.98899 1.01206 1.45935 1.07595 1.08685 1.74734 1.20917 0.90479 0.83516 0.74548 1.90687 1.71314 1.33266 1.51329 1.21286 0.90171 0.98179 1.02429 1.21610 0.93947 0.96157 1.02788 1.21257 0.93693 0.94920 0.89343 1.57918 1.58428 1.23766 1.44010 1.01293 0.72636 0.72397 0.73163 1.93516 1.86687 1.73401 1.44563 1.93507 1.86426 1.32335 1.87559 1.57454 1.34095 1.29866 1.62524 1.21503 0.98673 0.83973 1.00709 1.19369 0.94535 0.88333 0.88431 1.21582 1.32581 1.12769 0.89745 0.92062 1.25527 0.97130 0.99854 0.94808 1.69989 1.46680 1.41103 0.99534 0.86188 0.79711 0.80849 0.79235 1.20044 1.20668 1.16965 1.21603 0.94457 0.81089 1.04014 1.21810 0.95158 1.02384 0.95934 0.91013 0.92718 0.92671 0.90060 0.90213 0.92898 0.92843 0.74482 0.85906 0.90621 0.92635 0.90962 0.91208 0.92034 0.90735 0.90295 0.93751 0.95128 0.92522 0.88212 0.89194 0.86204 0.92176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.91 71.98 0.71 -0.55 16 2 C -0.13 -1.07 6.05 30.59 0.19 -0.88 16 3 C 0.11 1.75 5.67 86.38 0.49 2.24 16 4 N -0.72 -11.15 5.44 -463.04 -2.52 -13.67 16 5 C 0.52 12.34 7.15 87.66 0.63 12.97 16 6 O -0.59 -19.62 15.98 -3.04 -0.05 -19.67 16 7 C -0.10 -2.18 2.49 -11.51 -0.03 -2.21 16 8 C -0.11 -3.13 4.65 30.67 0.14 -2.98 16 9 C 0.13 4.56 6.48 86.36 0.56 5.12 16 10 N -1.00 -32.04 3.35 -513.84 -1.72 -33.76 16 11 S 2.80 106.37 6.11 -56.49 -0.34 106.02 16 12 O -1.00 -37.36 15.79 -128.00 -2.02 -39.39 16 13 O -1.01 -46.02 15.28 -128.00 -1.96 -47.98 16 14 N -1.00 -38.40 3.23 -543.25 -1.75 -40.16 16 15 C 0.10 2.93 10.31 127.77 1.32 4.24 16 16 C 0.22 9.86 4.48 85.63 0.38 10.24 16 17 C -0.53 -27.08 9.94 25.60 0.25 -26.83 16 18 H 0.06 3.34 8.06 -2.91 -0.02 3.31 16 19 C 0.03 1.42 5.47 84.65 0.46 1.88 16 20 N -0.93 -53.78 13.96 21.45 0.30 -53.48 16 21 Si 0.92 41.94 27.47 68.60 1.88 43.82 16 22 H -0.27 -12.68 7.11 99.48 0.71 -11.98 16 23 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 24 H -0.25 -10.46 6.54 99.48 0.65 -9.81 16 25 C 0.11 2.54 6.45 86.22 0.56 3.10 16 26 C -0.11 -2.09 5.25 30.53 0.16 -1.93 16 27 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 28 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 33 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.42 3.55 7.87 -92.71 -0.73 2.82 16 35 H 0.12 2.23 8.14 -2.39 -0.02 2.21 16 36 H 0.08 2.30 8.07 -2.39 -0.02 2.28 16 37 H 0.05 1.81 8.13 -2.39 -0.02 1.79 16 38 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 39 H 0.07 2.77 6.92 -2.39 -0.02 2.75 16 40 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 41 H 0.07 2.28 8.07 -2.38 -0.02 2.26 16 42 H 0.08 1.99 7.79 -2.39 -0.02 1.97 16 43 H 0.04 1.93 7.17 -2.39 -0.02 1.91 16 44 H 0.03 1.47 6.34 -2.38 -0.02 1.45 16 45 H 0.27 14.54 8.31 -92.71 -0.77 13.77 16 46 H 0.10 2.12 6.91 -2.39 -0.02 2.10 16 47 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 48 H 0.12 1.16 7.52 -2.39 -0.02 1.14 16 49 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 Total: -1.00 -74.13 400.51 -2.21 -76.34 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: 0.15 Total: 17.50 kcal Atomic # 6 Polarization: -1.41 SS G_CDS: 5.82 Total: 4.42 kcal Atomic # 7 Polarization: -135.37 SS G_CDS: -5.70 Total: -141.07 kcal Atomic # 8 Polarization: -103.01 SS G_CDS: -4.03 Total: -107.03 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 1.88 Total: 43.82 kcal Atomic # 16 Polarization: 106.37 SS G_CDS: -0.34 Total: 106.02 kcal Total: -74.13 -2.21 -76.34 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045805525.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.583 kcal (2) G-P(sol) polarization free energy of solvation -74.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds