Wall clock time and date at job start Wed Apr 1 2020 04:09:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 C 1.52998 * 109.46911 * 2 1
4 4 N 1.46508 * 109.46680 * 119.99291 * 2 1 3
5 5 C 1.46496 * 120.00206 * 304.52410 * 4 2 1
6 6 C 1.50694 * 109.47514 * 270.00547 * 5 4 2
7 7 H 1.08006 * 120.00054 * 359.97438 * 6 5 4
8 8 C 1.37875 * 120.00589 * 180.02562 * 6 5 4
9 9 N 1.31523 * 119.99824 * 359.97438 * 8 6 5
10 10 Si 1.86803 * 120.00449 * 179.97438 * 8 6 5
11 11 H 1.48492 * 109.46980 * 0.02562 * 10 8 6
12 12 H 1.48505 * 109.46852 * 120.00055 * 10 8 6
13 13 H 1.48496 * 109.47150 * 240.00060 * 10 8 6
14 14 C 1.34773 * 119.99453 * 124.52980 * 4 2 1
15 15 O 1.21281 * 119.99608 * 185.25143 * 14 4 2
16 16 C 1.50695 * 120.00292 * 5.24552 * 14 4 2
17 17 N 1.46904 * 109.47150 * 173.83959 * 16 14 4
18 18 C 1.46896 * 111.00162 * 169.99735 * 17 16 14
19 19 C 1.53234 * 109.34254 * 187.25050 * 18 17 16
20 20 N 1.47078 * 108.52545 * 306.17830 * 19 18 17
21 21 S 1.65597 * 120.88184 * 231.18734 * 20 19 18
22 22 C 1.81401 * 104.45104 * 89.99434 * 21 20 19
23 23 O 1.42098 * 104.27848 * 206.06527 * 21 20 19
24 24 O 1.42099 * 104.27720 * 333.92339 * 21 20 19
25 25 C 1.47074 * 118.23791 * 51.44918 * 20 19 18
26 26 C 1.46900 * 110.99920 * 294.30450 * 17 16 14
27 27 H 1.08996 * 109.47734 * 295.41265 * 1 2 3
28 28 H 1.09007 * 109.47169 * 55.40745 * 1 2 3
29 29 H 1.08999 * 109.47702 * 175.40597 * 1 2 3
30 30 H 1.08991 * 109.47499 * 239.99577 * 2 1 3
31 31 H 1.09005 * 109.47104 * 184.74033 * 3 2 1
32 32 H 1.09007 * 109.47104 * 304.73482 * 3 2 1
33 33 H 1.08998 * 109.47703 * 64.73069 * 3 2 1
34 34 H 1.09007 * 109.46935 * 30.00272 * 5 4 2
35 35 H 1.08999 * 109.47072 * 149.99703 * 5 4 2
36 36 H 0.96990 * 120.00080 * 179.97438 * 9 8 6
37 37 H 1.08997 * 109.47415 * 53.84200 * 16 14 4
38 38 H 1.09002 * 109.47188 * 293.83510 * 16 14 4
39 39 H 1.09002 * 109.49000 * 67.29443 * 18 17 16
40 40 H 1.08997 * 109.49614 * 307.21670 * 18 17 16
41 41 H 1.09003 * 109.62867 * 186.46273 * 19 18 17
42 42 H 1.09004 * 109.62402 * 65.88113 * 19 18 17
43 43 H 1.09003 * 109.47070 * 180.02562 * 22 21 20
44 44 H 1.09007 * 109.47108 * 300.00034 * 22 21 20
45 45 H 1.08988 * 109.47428 * 60.00242 * 22 21 20
46 46 H 1.08997 * 109.62942 * 68.25895 * 25 20 19
47 47 H 1.09001 * 109.62782 * 188.83913 * 25 20 19
48 48 H 1.08996 * 109.48990 * 292.70330 * 26 17 16
49 49 H 1.08997 * 109.49551 * 52.78449 * 26 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 7 2.0182 -0.6905 1.1964
5 6 1.5844 -0.2503 2.5246
6 6 2.5392 0.7932 3.0447
7 1 3.3849 1.0977 2.4459
8 6 2.3338 1.3584 4.2853
9 7 1.3043 0.9873 5.0148
10 14 3.5178 2.6514 4.9303
11 1 4.5843 2.8912 3.9254
12 1 2.7810 3.9162 5.1809
13 1 4.1288 2.1751 6.1972
14 6 2.8666 -1.7307 1.0749
15 8 3.1960 -2.3623 2.0564
16 6 3.4057 -2.1090 -0.2805
17 7 4.4126 -3.1679 -0.1289
18 6 4.7883 -3.7280 -1.4339
19 6 5.6974 -4.9431 -1.2220
20 7 6.8264 -4.5392 -0.3702
21 16 8.3878 -4.8555 -0.8222
22 6 8.8875 -3.3955 -1.7758
23 8 9.1019 -4.9180 0.4047
24 8 8.2843 -5.9923 -1.6683
25 6 6.5315 -3.8522 0.8963
26 6 5.5898 -2.6747 0.5983
27 1 -0.3634 0.4410 0.9282
28 1 -0.3634 0.5835 -0.8460
29 1 -0.3634 -1.0243 -0.0823
30 1 1.8934 -0.5138 -0.8898
31 1 3.1267 1.4437 -0.0849
32 1 1.6089 1.9802 -0.8446
33 1 1.7475 1.9313 0.9293
34 1 0.5830 0.1749 2.4573
35 1 1.5723 -1.1026 3.2038
36 1 1.1600 1.3846 5.8877
37 1 3.8636 -1.2363 -0.7460
38 1 2.5907 -2.4699 -0.9080
39 1 5.3192 -2.9733 -2.0143
40 1 3.8903 -4.0346 -1.9703
41 1 6.0714 -5.2928 -2.1843
42 1 5.1362 -5.7393 -0.7328
43 1 9.9152 -3.5191 -2.1176
44 1 8.2296 -3.2817 -2.6375
45 1 8.8180 -2.5088 -1.1460
46 1 6.0490 -4.5455 1.5852
47 1 7.4573 -3.4803 1.3353
48 1 6.1096 -1.9348 -0.0104
49 1 5.2732 -2.2175 1.5357
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000052244294.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:09:25
Heat of formation + Delta-G solvation = -82.275822 kcal
Electronic energy + Delta-G solvation = -30347.690874 eV
Core-core repulsion = 26244.887203 eV
Total energy + Delta-G solvation = -4102.803671 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 347.171 amu
Computer time = 0.81 seconds
Orbital eigenvalues (eV)
-39.73953 -38.39749 -37.39082 -36.18993 -35.98671 -34.50177 -32.84302 -31.24096
-30.84440 -29.79586 -29.14672 -27.05773 -26.78092 -24.65220 -23.92050 -22.55985
-21.25659 -20.78929 -18.98903 -18.20300 -17.79275 -16.81267 -16.60228 -16.47398
-16.31659 -15.53935 -15.36105 -14.80548 -14.76477 -14.60963 -14.39987 -13.95724
-13.82532 -13.65255 -13.50899 -13.47312 -13.02605 -12.82574 -12.53513 -12.49000
-12.36561 -12.31665 -11.97916 -11.85818 -11.75368 -11.54549 -11.42350 -11.37499
-11.27970 -11.13061 -10.94621 -10.89773 -10.77529 -10.60674 -10.39208 -10.01589
-9.55130 -9.36491 -8.84336 -8.44587 -8.21796 -7.64070 -6.06119 -4.09876
-0.01218 2.35363 3.26584 3.33619 3.35995 3.41984 3.55933 3.62296
3.84439 4.10782 4.30717 4.42041 4.53763 4.59098 4.84041 4.94099
5.03764 5.14170 5.16561 5.24817 5.26645 5.30112 5.32356 5.41483
5.46448 5.49548 5.56086 5.61450 5.75991 5.85749 5.97067 5.99113
6.05803 6.11149 6.20710 6.29386 6.38646 6.55794 6.86575 6.93289
7.04612 7.16276 7.48030 7.56898 7.91258 8.23135 8.44523 8.89790
9.11477 9.54662 11.01849
Molecular weight = 347.17amu
Principal moments of inertia in cm(-1)
A = 0.013797 B = 0.002956 C = 0.002645
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2029.007010 B = 9469.201829 C =10585.058418
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.163 4.163
2 C 0.135 3.865
3 C -0.161 4.161
4 N -0.595 5.595
5 C 0.245 3.755
6 C -0.520 4.520
7 H 0.057 0.943
8 C 0.061 3.939
9 N -0.893 5.893
10 Si 0.894 3.106
11 H -0.274 1.274
12 H -0.284 1.284
13 H -0.283 1.283
14 C 0.506 3.494
15 O -0.523 6.523
16 C 0.037 3.963
17 N -0.515 5.515
18 C 0.040 3.960
19 C 0.129 3.871
20 N -1.001 6.001
21 S 2.611 3.389
22 C -0.675 4.675
23 O -0.953 6.953
24 O -0.958 6.958
25 C 0.131 3.869
26 C 0.038 3.962
27 H 0.071 0.929
28 H 0.058 0.942
29 H 0.052 0.948
30 H 0.070 0.930
31 H 0.048 0.952
32 H 0.048 0.952
33 H 0.085 0.915
34 H 0.034 0.966
35 H 0.043 0.957
36 H 0.262 0.738
37 H 0.055 0.945
38 H 0.097 0.903
39 H 0.035 0.965
40 H 0.087 0.913
41 H 0.091 0.909
42 H 0.083 0.917
43 H 0.125 0.875
44 H 0.125 0.875
45 H 0.127 0.873
46 H 0.087 0.913
47 H 0.092 0.908
48 H 0.030 0.970
49 H 0.110 0.890
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.832 -5.950 -18.508 20.959
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.221 4.221
2 C 0.031 3.969
3 C -0.219 4.219
4 N -0.329 5.329
5 C 0.126 3.874
6 C -0.559 4.559
7 H 0.076 0.924
8 C -0.141 4.141
9 N -0.532 5.532
10 Si 0.722 3.278
11 H -0.199 1.199
12 H -0.211 1.211
13 H -0.209 1.209
14 C 0.292 3.708
15 O -0.399 6.399
16 C -0.094 4.094
17 N -0.240 5.240
18 C -0.089 4.089
19 C 0.004 3.996
20 N -0.840 5.840
21 S 2.704 3.296
22 C -0.825 4.825
23 O -0.944 6.944
24 O -0.948 6.948
25 C 0.006 3.994
26 C -0.091 4.091
27 H 0.090 0.910
28 H 0.077 0.923
29 H 0.071 0.929
30 H 0.088 0.912
31 H 0.067 0.933
32 H 0.067 0.933
33 H 0.104 0.896
34 H 0.052 0.948
35 H 0.061 0.939
36 H 0.072 0.928
37 H 0.073 0.927
38 H 0.115 0.885
39 H 0.053 0.947
40 H 0.105 0.895
41 H 0.109 0.891
42 H 0.101 0.899
43 H 0.143 0.857
44 H 0.144 0.856
45 H 0.146 0.854
46 H 0.105 0.895
47 H 0.110 0.890
48 H 0.048 0.952
49 H 0.128 0.872
Dipole moment (debyes) X Y Z Total
from point charges 8.207 -7.400 -17.306 20.533
hybrid contribution 0.757 2.329 -0.474 2.495
sum 8.964 -5.070 -17.780 20.548
Atomic orbital electron populations
1.22157 0.95407 1.01656 1.02837 1.20945 0.94314 0.93890 0.87788
1.22203 1.00564 0.96036 1.03136 1.48333 1.45407 1.30448 1.08668
1.19245 0.95218 0.95671 0.77220 1.21463 1.10957 1.21540 1.01979
0.92429 1.24928 0.95506 0.97117 0.96559 1.69938 1.28457 1.43047
1.11787 0.86514 0.81036 0.81254 0.79014 1.19920 1.21064 1.20916
1.20091 0.80026 0.80667 0.90026 1.90657 1.58164 1.51656 1.39449
1.22071 0.96164 0.93956 0.97238 1.61454 1.11394 1.33358 1.17819
1.22526 0.99325 0.96549 0.90533 1.21496 0.86987 0.96786 0.94345
1.57805 1.22259 1.73979 1.29936 1.04886 0.73235 0.76440 0.75041
1.30612 1.12218 1.23360 1.16269 1.93618 1.71955 1.86700 1.42108
1.93597 1.85354 1.45814 1.70068 1.21645 0.99339 0.94287 0.84168
1.22732 0.90190 0.95449 1.00768 0.90966 0.92319 0.92910 0.91184
0.93291 0.93262 0.89566 0.94768 0.93910 0.92814 0.92671 0.88536
0.94705 0.89478 0.89081 0.89852 0.85653 0.85603 0.85401 0.89490
0.88998 0.95181 0.87222
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -2.26 9.19 37.16 0.34 -1.92 16
2 C 0.14 2.04 3.11 -67.93 -0.21 1.83 16
3 C -0.16 -2.46 8.75 37.16 0.33 -2.14 16
4 N -0.60 -11.67 2.39 -167.48 -0.40 -12.07 16
5 C 0.25 6.05 4.74 -5.20 -0.02 6.03 16
6 C -0.52 -13.83 7.71 -34.44 -0.27 -14.10 16
7 H 0.06 1.53 7.59 -52.48 -0.40 1.13 16
8 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16
9 N -0.89 -25.77 13.29 55.43 0.74 -25.04 16
10 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16
11 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16
12 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16
13 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16
14 C 0.51 9.74 7.18 -10.99 -0.08 9.66 16
15 O -0.52 -12.27 14.21 5.56 0.08 -12.19 16
16 C 0.04 0.50 3.78 -4.98 -0.02 0.48 16
17 N -0.52 -6.75 4.33 -235.48 -1.02 -7.77 16
18 C 0.04 0.37 5.62 -3.71 -0.02 0.35 16
19 C 0.13 1.17 6.46 -3.61 -0.02 1.14 16
20 N -1.00 -10.04 3.25 -112.98 -0.37 -10.41 16
21 S 2.61 24.67 6.06 -107.50 -0.65 24.02 16
22 C -0.68 -3.92 10.99 101.05 1.11 -2.81 16
23 O -0.95 -12.41 16.78 -57.54 -0.97 -13.38 16
24 O -0.96 -11.50 16.79 -57.54 -0.97 -12.47 16
25 C 0.13 1.55 6.50 -3.37 -0.02 1.53 16
26 C 0.04 0.50 5.28 -3.46 -0.02 0.49 16
27 H 0.07 1.18 6.33 -51.93 -0.33 0.86 16
28 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16
29 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16
30 H 0.07 0.85 5.86 -51.93 -0.30 0.55 16
31 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16
32 H 0.05 0.60 8.14 -51.92 -0.42 0.18 16
33 H 0.09 1.61 6.59 -51.93 -0.34 1.27 16
34 H 0.03 0.86 6.11 -51.92 -0.32 0.54 16
35 H 0.04 1.22 7.36 -51.93 -0.38 0.84 16
36 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16
37 H 0.06 0.68 7.78 -51.93 -0.40 0.28 16
38 H 0.10 1.10 7.60 -51.93 -0.39 0.71 16
39 H 0.03 0.28 8.14 -51.93 -0.42 -0.15 16
40 H 0.09 0.66 7.99 -51.93 -0.41 0.25 16
41 H 0.09 0.64 7.19 -51.93 -0.37 0.27 16
42 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16
43 H 0.12 0.56 8.14 -51.92 -0.42 0.14 16
44 H 0.13 0.56 8.14 -51.92 -0.42 0.13 16
45 H 0.13 0.68 8.14 -51.93 -0.42 0.26 16
46 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16
47 H 0.09 0.98 7.18 -51.93 -0.37 0.61 16
48 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16
49 H 0.11 1.87 5.98 -51.93 -0.31 1.56 16
LS Contribution 394.17 15.07 5.94 5.94
Total: -1.00 -35.78 394.17 -9.77 -45.54
By element:
Atomic # 1 Polarization: 7.70 SS G_CDS: -8.13 Total: -0.43 kcal
Atomic # 6 Polarization: 1.12 SS G_CDS: 1.00 Total: 2.11 kcal
Atomic # 7 Polarization: -54.24 SS G_CDS: -1.05 Total: -55.29 kcal
Atomic # 8 Polarization: -36.19 SS G_CDS: -1.85 Total: -38.04 kcal
Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal
Atomic # 16 Polarization: 24.67 SS G_CDS: -0.65 Total: 24.02 kcal
Total LS contribution 5.94 Total: 5.94 kcal
Total: -35.78 -9.77 -45.54 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000052244294.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -36.732 kcal
(2) G-P(sol) polarization free energy of solvation -35.776 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.508 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.768 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.544 kcal
(6) G-S(sol) free energy of system = (1) + (5) -82.276 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.81 seconds