Wall clock time and date at job start Wed Apr 1 2020 04:09:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.46911 * 2 1 4 4 N 1.46508 * 109.46680 * 119.99291 * 2 1 3 5 5 C 1.46496 * 120.00206 * 304.52410 * 4 2 1 6 6 C 1.50694 * 109.47514 * 270.00547 * 5 4 2 7 7 H 1.08006 * 120.00054 * 359.97438 * 6 5 4 8 8 C 1.37875 * 120.00589 * 180.02562 * 6 5 4 9 9 N 1.31523 * 119.99824 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 120.00449 * 179.97438 * 8 6 5 11 11 H 1.48492 * 109.46980 * 0.02562 * 10 8 6 12 12 H 1.48505 * 109.46852 * 120.00055 * 10 8 6 13 13 H 1.48496 * 109.47150 * 240.00060 * 10 8 6 14 14 C 1.34773 * 119.99453 * 124.52980 * 4 2 1 15 15 O 1.21281 * 119.99608 * 185.25143 * 14 4 2 16 16 C 1.50695 * 120.00292 * 5.24552 * 14 4 2 17 17 N 1.46904 * 109.47150 * 173.83959 * 16 14 4 18 18 C 1.46896 * 111.00162 * 169.99735 * 17 16 14 19 19 C 1.53234 * 109.34254 * 187.25050 * 18 17 16 20 20 N 1.47078 * 108.52545 * 306.17830 * 19 18 17 21 21 S 1.65597 * 120.88184 * 231.18734 * 20 19 18 22 22 C 1.81401 * 104.45104 * 89.99434 * 21 20 19 23 23 O 1.42098 * 104.27848 * 206.06527 * 21 20 19 24 24 O 1.42099 * 104.27720 * 333.92339 * 21 20 19 25 25 C 1.47074 * 118.23791 * 51.44918 * 20 19 18 26 26 C 1.46900 * 110.99920 * 294.30450 * 17 16 14 27 27 H 1.08996 * 109.47734 * 295.41265 * 1 2 3 28 28 H 1.09007 * 109.47169 * 55.40745 * 1 2 3 29 29 H 1.08999 * 109.47702 * 175.40597 * 1 2 3 30 30 H 1.08991 * 109.47499 * 239.99577 * 2 1 3 31 31 H 1.09005 * 109.47104 * 184.74033 * 3 2 1 32 32 H 1.09007 * 109.47104 * 304.73482 * 3 2 1 33 33 H 1.08998 * 109.47703 * 64.73069 * 3 2 1 34 34 H 1.09007 * 109.46935 * 30.00272 * 5 4 2 35 35 H 1.08999 * 109.47072 * 149.99703 * 5 4 2 36 36 H 0.96990 * 120.00080 * 179.97438 * 9 8 6 37 37 H 1.08997 * 109.47415 * 53.84200 * 16 14 4 38 38 H 1.09002 * 109.47188 * 293.83510 * 16 14 4 39 39 H 1.09002 * 109.49000 * 67.29443 * 18 17 16 40 40 H 1.08997 * 109.49614 * 307.21670 * 18 17 16 41 41 H 1.09003 * 109.62867 * 186.46273 * 19 18 17 42 42 H 1.09004 * 109.62402 * 65.88113 * 19 18 17 43 43 H 1.09003 * 109.47070 * 180.02562 * 22 21 20 44 44 H 1.09007 * 109.47108 * 300.00034 * 22 21 20 45 45 H 1.08988 * 109.47428 * 60.00242 * 22 21 20 46 46 H 1.08997 * 109.62942 * 68.25895 * 25 20 19 47 47 H 1.09001 * 109.62782 * 188.83913 * 25 20 19 48 48 H 1.08996 * 109.48990 * 292.70330 * 26 17 16 49 49 H 1.08997 * 109.49551 * 52.78449 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0182 -0.6905 1.1964 5 6 1.5844 -0.2503 2.5246 6 6 2.5392 0.7932 3.0447 7 1 3.3849 1.0977 2.4459 8 6 2.3338 1.3584 4.2853 9 7 1.3043 0.9873 5.0148 10 14 3.5178 2.6514 4.9303 11 1 4.5843 2.8912 3.9254 12 1 2.7810 3.9162 5.1809 13 1 4.1288 2.1751 6.1972 14 6 2.8666 -1.7307 1.0749 15 8 3.1960 -2.3623 2.0564 16 6 3.4057 -2.1090 -0.2805 17 7 4.4126 -3.1679 -0.1289 18 6 4.7883 -3.7280 -1.4339 19 6 5.6974 -4.9431 -1.2220 20 7 6.8264 -4.5392 -0.3702 21 16 8.3878 -4.8555 -0.8222 22 6 8.8875 -3.3955 -1.7758 23 8 9.1019 -4.9180 0.4047 24 8 8.2843 -5.9923 -1.6683 25 6 6.5315 -3.8522 0.8963 26 6 5.5898 -2.6747 0.5983 27 1 -0.3634 0.4410 0.9282 28 1 -0.3634 0.5835 -0.8460 29 1 -0.3634 -1.0243 -0.0823 30 1 1.8934 -0.5138 -0.8898 31 1 3.1267 1.4437 -0.0849 32 1 1.6089 1.9802 -0.8446 33 1 1.7475 1.9313 0.9293 34 1 0.5830 0.1749 2.4573 35 1 1.5723 -1.1026 3.2038 36 1 1.1600 1.3846 5.8877 37 1 3.8636 -1.2363 -0.7460 38 1 2.5907 -2.4699 -0.9080 39 1 5.3192 -2.9733 -2.0143 40 1 3.8903 -4.0346 -1.9703 41 1 6.0714 -5.2928 -2.1843 42 1 5.1362 -5.7393 -0.7328 43 1 9.9152 -3.5191 -2.1176 44 1 8.2296 -3.2817 -2.6375 45 1 8.8180 -2.5088 -1.1460 46 1 6.0490 -4.5455 1.5852 47 1 7.4573 -3.4803 1.3353 48 1 6.1096 -1.9348 -0.0104 49 1 5.2732 -2.2175 1.5357 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052244294.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:09:25 Heat of formation + Delta-G solvation = -82.275822 kcal Electronic energy + Delta-G solvation = -30347.690874 eV Core-core repulsion = 26244.887203 eV Total energy + Delta-G solvation = -4102.803671 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.73953 -38.39749 -37.39082 -36.18993 -35.98671 -34.50177 -32.84302 -31.24096 -30.84440 -29.79586 -29.14672 -27.05773 -26.78092 -24.65220 -23.92050 -22.55985 -21.25659 -20.78929 -18.98903 -18.20300 -17.79275 -16.81267 -16.60228 -16.47398 -16.31659 -15.53935 -15.36105 -14.80548 -14.76477 -14.60963 -14.39987 -13.95724 -13.82532 -13.65255 -13.50899 -13.47312 -13.02605 -12.82574 -12.53513 -12.49000 -12.36561 -12.31665 -11.97916 -11.85818 -11.75368 -11.54549 -11.42350 -11.37499 -11.27970 -11.13061 -10.94621 -10.89773 -10.77529 -10.60674 -10.39208 -10.01589 -9.55130 -9.36491 -8.84336 -8.44587 -8.21796 -7.64070 -6.06119 -4.09876 -0.01218 2.35363 3.26584 3.33619 3.35995 3.41984 3.55933 3.62296 3.84439 4.10782 4.30717 4.42041 4.53763 4.59098 4.84041 4.94099 5.03764 5.14170 5.16561 5.24817 5.26645 5.30112 5.32356 5.41483 5.46448 5.49548 5.56086 5.61450 5.75991 5.85749 5.97067 5.99113 6.05803 6.11149 6.20710 6.29386 6.38646 6.55794 6.86575 6.93289 7.04612 7.16276 7.48030 7.56898 7.91258 8.23135 8.44523 8.89790 9.11477 9.54662 11.01849 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.013797 B = 0.002956 C = 0.002645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2029.007010 B = 9469.201829 C =10585.058418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.135 3.865 3 C -0.161 4.161 4 N -0.595 5.595 5 C 0.245 3.755 6 C -0.520 4.520 7 H 0.057 0.943 8 C 0.061 3.939 9 N -0.893 5.893 10 Si 0.894 3.106 11 H -0.274 1.274 12 H -0.284 1.284 13 H -0.283 1.283 14 C 0.506 3.494 15 O -0.523 6.523 16 C 0.037 3.963 17 N -0.515 5.515 18 C 0.040 3.960 19 C 0.129 3.871 20 N -1.001 6.001 21 S 2.611 3.389 22 C -0.675 4.675 23 O -0.953 6.953 24 O -0.958 6.958 25 C 0.131 3.869 26 C 0.038 3.962 27 H 0.071 0.929 28 H 0.058 0.942 29 H 0.052 0.948 30 H 0.070 0.930 31 H 0.048 0.952 32 H 0.048 0.952 33 H 0.085 0.915 34 H 0.034 0.966 35 H 0.043 0.957 36 H 0.262 0.738 37 H 0.055 0.945 38 H 0.097 0.903 39 H 0.035 0.965 40 H 0.087 0.913 41 H 0.091 0.909 42 H 0.083 0.917 43 H 0.125 0.875 44 H 0.125 0.875 45 H 0.127 0.873 46 H 0.087 0.913 47 H 0.092 0.908 48 H 0.030 0.970 49 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.832 -5.950 -18.508 20.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.031 3.969 3 C -0.219 4.219 4 N -0.329 5.329 5 C 0.126 3.874 6 C -0.559 4.559 7 H 0.076 0.924 8 C -0.141 4.141 9 N -0.532 5.532 10 Si 0.722 3.278 11 H -0.199 1.199 12 H -0.211 1.211 13 H -0.209 1.209 14 C 0.292 3.708 15 O -0.399 6.399 16 C -0.094 4.094 17 N -0.240 5.240 18 C -0.089 4.089 19 C 0.004 3.996 20 N -0.840 5.840 21 S 2.704 3.296 22 C -0.825 4.825 23 O -0.944 6.944 24 O -0.948 6.948 25 C 0.006 3.994 26 C -0.091 4.091 27 H 0.090 0.910 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.088 0.912 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.104 0.896 34 H 0.052 0.948 35 H 0.061 0.939 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.115 0.885 39 H 0.053 0.947 40 H 0.105 0.895 41 H 0.109 0.891 42 H 0.101 0.899 43 H 0.143 0.857 44 H 0.144 0.856 45 H 0.146 0.854 46 H 0.105 0.895 47 H 0.110 0.890 48 H 0.048 0.952 49 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 8.207 -7.400 -17.306 20.533 hybrid contribution 0.757 2.329 -0.474 2.495 sum 8.964 -5.070 -17.780 20.548 Atomic orbital electron populations 1.22157 0.95407 1.01656 1.02837 1.20945 0.94314 0.93890 0.87788 1.22203 1.00564 0.96036 1.03136 1.48333 1.45407 1.30448 1.08668 1.19245 0.95218 0.95671 0.77220 1.21463 1.10957 1.21540 1.01979 0.92429 1.24928 0.95506 0.97117 0.96559 1.69938 1.28457 1.43047 1.11787 0.86514 0.81036 0.81254 0.79014 1.19920 1.21064 1.20916 1.20091 0.80026 0.80667 0.90026 1.90657 1.58164 1.51656 1.39449 1.22071 0.96164 0.93956 0.97238 1.61454 1.11394 1.33358 1.17819 1.22526 0.99325 0.96549 0.90533 1.21496 0.86987 0.96786 0.94345 1.57805 1.22259 1.73979 1.29936 1.04886 0.73235 0.76440 0.75041 1.30612 1.12218 1.23360 1.16269 1.93618 1.71955 1.86700 1.42108 1.93597 1.85354 1.45814 1.70068 1.21645 0.99339 0.94287 0.84168 1.22732 0.90190 0.95449 1.00768 0.90966 0.92319 0.92910 0.91184 0.93291 0.93262 0.89566 0.94768 0.93910 0.92814 0.92671 0.88536 0.94705 0.89478 0.89081 0.89852 0.85653 0.85603 0.85401 0.89490 0.88998 0.95181 0.87222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.26 9.19 37.16 0.34 -1.92 16 2 C 0.14 2.04 3.11 -67.93 -0.21 1.83 16 3 C -0.16 -2.46 8.75 37.16 0.33 -2.14 16 4 N -0.60 -11.67 2.39 -167.48 -0.40 -12.07 16 5 C 0.25 6.05 4.74 -5.20 -0.02 6.03 16 6 C -0.52 -13.83 7.71 -34.44 -0.27 -14.10 16 7 H 0.06 1.53 7.59 -52.48 -0.40 1.13 16 8 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 9 N -0.89 -25.77 13.29 55.43 0.74 -25.04 16 10 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 11 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 12 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 13 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 14 C 0.51 9.74 7.18 -10.99 -0.08 9.66 16 15 O -0.52 -12.27 14.21 5.56 0.08 -12.19 16 16 C 0.04 0.50 3.78 -4.98 -0.02 0.48 16 17 N -0.52 -6.75 4.33 -235.48 -1.02 -7.77 16 18 C 0.04 0.37 5.62 -3.71 -0.02 0.35 16 19 C 0.13 1.17 6.46 -3.61 -0.02 1.14 16 20 N -1.00 -10.04 3.25 -112.98 -0.37 -10.41 16 21 S 2.61 24.67 6.06 -107.50 -0.65 24.02 16 22 C -0.68 -3.92 10.99 101.05 1.11 -2.81 16 23 O -0.95 -12.41 16.78 -57.54 -0.97 -13.38 16 24 O -0.96 -11.50 16.79 -57.54 -0.97 -12.47 16 25 C 0.13 1.55 6.50 -3.37 -0.02 1.53 16 26 C 0.04 0.50 5.28 -3.46 -0.02 0.49 16 27 H 0.07 1.18 6.33 -51.93 -0.33 0.86 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.07 0.85 5.86 -51.93 -0.30 0.55 16 31 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.05 0.60 8.14 -51.92 -0.42 0.18 16 33 H 0.09 1.61 6.59 -51.93 -0.34 1.27 16 34 H 0.03 0.86 6.11 -51.92 -0.32 0.54 16 35 H 0.04 1.22 7.36 -51.93 -0.38 0.84 16 36 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 37 H 0.06 0.68 7.78 -51.93 -0.40 0.28 16 38 H 0.10 1.10 7.60 -51.93 -0.39 0.71 16 39 H 0.03 0.28 8.14 -51.93 -0.42 -0.15 16 40 H 0.09 0.66 7.99 -51.93 -0.41 0.25 16 41 H 0.09 0.64 7.19 -51.93 -0.37 0.27 16 42 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.12 0.56 8.14 -51.92 -0.42 0.14 16 44 H 0.13 0.56 8.14 -51.92 -0.42 0.13 16 45 H 0.13 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 47 H 0.09 0.98 7.18 -51.93 -0.37 0.61 16 48 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 49 H 0.11 1.87 5.98 -51.93 -0.31 1.56 16 LS Contribution 394.17 15.07 5.94 5.94 Total: -1.00 -35.78 394.17 -9.77 -45.54 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: -8.13 Total: -0.43 kcal Atomic # 6 Polarization: 1.12 SS G_CDS: 1.00 Total: 2.11 kcal Atomic # 7 Polarization: -54.24 SS G_CDS: -1.05 Total: -55.29 kcal Atomic # 8 Polarization: -36.19 SS G_CDS: -1.85 Total: -38.04 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: 24.67 SS G_CDS: -0.65 Total: 24.02 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -35.78 -9.77 -45.54 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052244294.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.732 kcal (2) G-P(sol) polarization free energy of solvation -35.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds