Wall clock time and date at job start Wed Apr 1 2020 04:09:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.46911 * 2 1 4 4 N 1.46508 * 109.46680 * 119.99291 * 2 1 3 5 5 C 1.46496 * 120.00206 * 304.52410 * 4 2 1 6 6 C 1.50694 * 109.47514 * 270.00547 * 5 4 2 7 7 H 1.08006 * 120.00054 * 359.97438 * 6 5 4 8 8 C 1.37875 * 120.00589 * 180.02562 * 6 5 4 9 9 N 1.31523 * 119.99824 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 120.00449 * 179.97438 * 8 6 5 11 11 H 1.48492 * 109.46980 * 0.02562 * 10 8 6 12 12 H 1.48505 * 109.46852 * 120.00055 * 10 8 6 13 13 H 1.48496 * 109.47150 * 240.00060 * 10 8 6 14 14 C 1.34773 * 119.99453 * 124.52980 * 4 2 1 15 15 O 1.21281 * 119.99608 * 185.25143 * 14 4 2 16 16 C 1.50695 * 120.00292 * 5.24552 * 14 4 2 17 17 N 1.46904 * 109.47150 * 173.83959 * 16 14 4 18 18 C 1.46896 * 111.00162 * 169.99735 * 17 16 14 19 19 C 1.53234 * 109.34254 * 187.25050 * 18 17 16 20 20 N 1.47078 * 108.52545 * 306.17830 * 19 18 17 21 21 S 1.65597 * 120.88184 * 231.18734 * 20 19 18 22 22 C 1.81401 * 104.45104 * 89.99434 * 21 20 19 23 23 O 1.42098 * 104.27848 * 206.06527 * 21 20 19 24 24 O 1.42099 * 104.27720 * 333.92339 * 21 20 19 25 25 C 1.47074 * 118.23791 * 51.44918 * 20 19 18 26 26 C 1.46900 * 110.99920 * 294.30450 * 17 16 14 27 27 H 1.08996 * 109.47734 * 295.41265 * 1 2 3 28 28 H 1.09007 * 109.47169 * 55.40745 * 1 2 3 29 29 H 1.08999 * 109.47702 * 175.40597 * 1 2 3 30 30 H 1.08991 * 109.47499 * 239.99577 * 2 1 3 31 31 H 1.09005 * 109.47104 * 184.74033 * 3 2 1 32 32 H 1.09007 * 109.47104 * 304.73482 * 3 2 1 33 33 H 1.08998 * 109.47703 * 64.73069 * 3 2 1 34 34 H 1.09007 * 109.46935 * 30.00272 * 5 4 2 35 35 H 1.08999 * 109.47072 * 149.99703 * 5 4 2 36 36 H 0.96990 * 120.00080 * 179.97438 * 9 8 6 37 37 H 1.08997 * 109.47415 * 53.84200 * 16 14 4 38 38 H 1.09002 * 109.47188 * 293.83510 * 16 14 4 39 39 H 1.09002 * 109.49000 * 67.29443 * 18 17 16 40 40 H 1.08997 * 109.49614 * 307.21670 * 18 17 16 41 41 H 1.09003 * 109.62867 * 186.46273 * 19 18 17 42 42 H 1.09004 * 109.62402 * 65.88113 * 19 18 17 43 43 H 1.09003 * 109.47070 * 180.02562 * 22 21 20 44 44 H 1.09007 * 109.47108 * 300.00034 * 22 21 20 45 45 H 1.08988 * 109.47428 * 60.00242 * 22 21 20 46 46 H 1.08997 * 109.62942 * 68.25895 * 25 20 19 47 47 H 1.09001 * 109.62782 * 188.83913 * 25 20 19 48 48 H 1.08996 * 109.48990 * 292.70330 * 26 17 16 49 49 H 1.08997 * 109.49551 * 52.78449 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0182 -0.6905 1.1964 5 6 1.5844 -0.2503 2.5246 6 6 2.5392 0.7932 3.0447 7 1 3.3849 1.0977 2.4459 8 6 2.3338 1.3584 4.2853 9 7 1.3043 0.9873 5.0148 10 14 3.5178 2.6514 4.9303 11 1 4.5843 2.8912 3.9254 12 1 2.7810 3.9162 5.1809 13 1 4.1288 2.1751 6.1972 14 6 2.8666 -1.7307 1.0749 15 8 3.1960 -2.3623 2.0564 16 6 3.4057 -2.1090 -0.2805 17 7 4.4126 -3.1679 -0.1289 18 6 4.7883 -3.7280 -1.4339 19 6 5.6974 -4.9431 -1.2220 20 7 6.8264 -4.5392 -0.3702 21 16 8.3878 -4.8555 -0.8222 22 6 8.8875 -3.3955 -1.7758 23 8 9.1019 -4.9180 0.4047 24 8 8.2843 -5.9923 -1.6683 25 6 6.5315 -3.8522 0.8963 26 6 5.5898 -2.6747 0.5983 27 1 -0.3634 0.4410 0.9282 28 1 -0.3634 0.5835 -0.8460 29 1 -0.3634 -1.0243 -0.0823 30 1 1.8934 -0.5138 -0.8898 31 1 3.1267 1.4437 -0.0849 32 1 1.6089 1.9802 -0.8446 33 1 1.7475 1.9313 0.9293 34 1 0.5830 0.1749 2.4573 35 1 1.5723 -1.1026 3.2038 36 1 1.1600 1.3846 5.8877 37 1 3.8636 -1.2363 -0.7460 38 1 2.5907 -2.4699 -0.9080 39 1 5.3192 -2.9733 -2.0143 40 1 3.8903 -4.0346 -1.9703 41 1 6.0714 -5.2928 -2.1843 42 1 5.1362 -5.7393 -0.7328 43 1 9.9152 -3.5191 -2.1176 44 1 8.2296 -3.2817 -2.6375 45 1 8.8180 -2.5088 -1.1460 46 1 6.0490 -4.5455 1.5852 47 1 7.4573 -3.4803 1.3353 48 1 6.1096 -1.9348 -0.0104 49 1 5.2732 -2.2175 1.5357 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000052244294.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:09:24 Heat of formation + Delta-G solvation = -111.015549 kcal Electronic energy + Delta-G solvation = -30348.937122 eV Core-core repulsion = 26244.887203 eV Total energy + Delta-G solvation = -4104.049919 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.03264 -39.48224 -38.23609 -37.44952 -37.02431 -35.50342 -34.84677 -32.35720 -32.04932 -30.53858 -30.28122 -28.61532 -27.95633 -25.93011 -24.76817 -24.27216 -22.56238 -21.64442 -19.80553 -19.51486 -18.69573 -18.56684 -18.12569 -17.33854 -17.13942 -16.94436 -16.51569 -16.30486 -15.74324 -15.58288 -15.55080 -15.26798 -14.91522 -14.78361 -14.36085 -14.16499 -14.09261 -13.97109 -13.90243 -13.46238 -13.40807 -13.30226 -13.20405 -13.17898 -12.89278 -12.84417 -12.79506 -12.69587 -12.47763 -12.23998 -12.22400 -12.11343 -12.08000 -12.01662 -11.70505 -11.54887 -11.42074 -10.58867 -10.48690 -10.03443 -9.32075 -9.14347 -8.16687 -6.28590 -0.71253 1.36478 1.39117 1.49510 1.61304 1.94363 2.29235 2.43771 2.95041 3.00101 3.13167 3.14149 3.59847 3.73614 4.02404 4.06359 4.06965 4.13626 4.21370 4.28484 4.33407 4.35795 4.41900 4.46207 4.52875 4.54896 4.79749 4.86957 4.89232 4.90247 4.94002 4.98963 5.03172 5.07912 5.11889 5.16930 5.17488 5.29873 5.48496 5.55003 5.62748 5.68970 5.92529 6.02332 6.15687 6.20659 6.79722 6.94882 7.36203 7.63478 8.90456 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.013797 B = 0.002956 C = 0.002645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2029.007010 B = 9469.201829 C =10585.058418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.129 3.871 3 C -0.156 4.156 4 N -0.601 5.601 5 C 0.264 3.736 6 C -0.521 4.521 7 H 0.056 0.944 8 C 0.005 3.995 9 N -0.931 5.931 10 Si 0.960 3.040 11 H -0.264 1.264 12 H -0.274 1.274 13 H -0.287 1.287 14 C 0.494 3.506 15 O -0.579 6.579 16 C 0.052 3.948 17 N -0.541 5.541 18 C 0.043 3.957 19 C 0.124 3.876 20 N -1.003 6.003 21 S 2.614 3.386 22 C -0.649 4.649 23 O -0.999 6.999 24 O -0.988 6.988 25 C 0.137 3.863 26 C 0.044 3.956 27 H 0.035 0.965 28 H 0.095 0.905 29 H 0.057 0.943 30 H 0.116 0.884 31 H 0.047 0.953 32 H 0.087 0.913 33 H 0.043 0.957 34 H 0.023 0.977 35 H -0.011 1.011 36 H 0.263 0.737 37 H 0.081 0.919 38 H 0.130 0.870 39 H 0.062 0.938 40 H 0.109 0.891 41 H 0.117 0.883 42 H 0.066 0.934 43 H 0.145 0.855 44 H 0.152 0.848 45 H 0.140 0.860 46 H 0.058 0.942 47 H 0.098 0.902 48 H 0.054 0.946 49 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.089 -4.516 -22.970 25.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.026 3.974 3 C -0.214 4.214 4 N -0.334 5.334 5 C 0.143 3.857 6 C -0.560 4.560 7 H 0.075 0.925 8 C -0.193 4.193 9 N -0.572 5.572 10 Si 0.785 3.215 11 H -0.188 1.188 12 H -0.199 1.199 13 H -0.213 1.213 14 C 0.282 3.718 15 O -0.459 6.459 16 C -0.078 4.078 17 N -0.266 5.266 18 C -0.086 4.086 19 C -0.001 4.001 20 N -0.840 5.840 21 S 2.713 3.287 22 C -0.803 4.803 23 O -0.990 6.990 24 O -0.979 6.979 25 C 0.011 3.989 26 C -0.086 4.086 27 H 0.054 0.946 28 H 0.114 0.886 29 H 0.076 0.924 30 H 0.134 0.866 31 H 0.066 0.934 32 H 0.106 0.894 33 H 0.062 0.938 34 H 0.041 0.959 35 H 0.007 0.993 36 H 0.072 0.928 37 H 0.098 0.902 38 H 0.147 0.853 39 H 0.080 0.920 40 H 0.127 0.873 41 H 0.135 0.865 42 H 0.085 0.915 43 H 0.164 0.836 44 H 0.170 0.830 45 H 0.158 0.842 46 H 0.077 0.923 47 H 0.116 0.884 48 H 0.072 0.928 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 9.445 -5.998 -21.809 24.512 hybrid contribution 0.358 1.851 0.850 2.068 sum 9.802 -4.147 -20.959 23.507 Atomic orbital electron populations 1.22129 0.94662 1.02349 1.02483 1.21358 0.95003 0.93910 0.87139 1.22136 1.00695 0.96092 1.02499 1.48365 1.45695 1.31152 1.08163 1.18604 0.94629 0.92975 0.79498 1.21701 1.10826 1.21400 1.02050 0.92536 1.25802 0.97160 0.99381 0.96986 1.70069 1.30341 1.44582 1.12222 0.85483 0.79074 0.78822 0.78137 1.18799 1.19918 1.21283 1.21275 0.78947 0.79522 0.92051 1.90635 1.59769 1.53420 1.42053 1.21984 0.97313 0.95331 0.93184 1.61357 1.11362 1.33461 1.20457 1.22652 1.00571 0.96668 0.88682 1.21650 0.86781 0.96691 0.95001 1.57696 1.22883 1.73933 1.29506 1.04586 0.72454 0.77328 0.74382 1.30361 1.13869 1.19901 1.16175 1.93560 1.72730 1.87870 1.44847 1.93554 1.85547 1.48598 1.70162 1.21398 0.99160 0.93525 0.84788 1.22538 0.90706 0.96072 0.99252 0.94570 0.88644 0.92401 0.86608 0.93405 0.89438 0.93808 0.95885 0.99275 0.92766 0.90154 0.85272 0.91981 0.87280 0.86544 0.91530 0.83645 0.82950 0.84152 0.92335 0.88369 0.92774 0.91907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.13 9.19 71.98 0.66 -3.47 16 2 C 0.13 3.57 3.11 44.99 0.14 3.71 16 3 C -0.16 -4.42 8.75 71.98 0.63 -3.79 16 4 N -0.60 -23.83 2.39 -802.17 -1.92 -25.74 16 5 C 0.26 13.82 4.74 85.63 0.41 14.22 16 6 C -0.52 -28.78 7.71 25.60 0.20 -28.58 16 7 H 0.06 3.06 7.59 -2.91 -0.02 3.04 16 8 C 0.00 0.28 5.46 84.65 0.46 0.74 16 9 N -0.93 -56.18 13.29 21.45 0.28 -55.90 16 10 Si 0.96 44.34 29.54 68.60 2.03 46.37 16 11 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 12 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 13 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 14 C 0.49 19.13 7.18 87.66 0.63 19.76 16 15 O -0.58 -28.81 14.21 -3.03 -0.04 -28.85 16 16 C 0.05 1.27 3.78 85.55 0.32 1.59 16 17 N -0.54 -13.11 4.33 -898.91 -3.89 -17.01 16 18 C 0.04 0.61 5.62 86.38 0.49 1.09 16 19 C 0.12 1.95 6.46 86.35 0.56 2.51 16 20 N -1.00 -18.82 3.25 -511.35 -1.66 -20.48 16 21 S 2.61 45.38 6.06 -56.49 -0.34 45.04 16 22 C -0.65 -4.62 10.99 113.37 1.25 -3.37 16 23 O -1.00 -26.07 16.78 -127.65 -2.14 -28.21 16 24 O -0.99 -22.39 16.79 -127.65 -2.14 -24.53 16 25 C 0.14 3.32 6.50 86.50 0.56 3.88 16 26 C 0.04 1.15 5.28 86.54 0.46 1.60 16 27 H 0.04 1.20 6.33 -2.39 -0.02 1.18 16 28 H 0.09 1.78 8.14 -2.38 -0.02 1.76 16 29 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.12 2.21 5.86 -2.39 -0.01 2.20 16 31 H 0.05 1.34 8.14 -2.38 -0.02 1.32 16 32 H 0.09 1.79 8.14 -2.38 -0.02 1.77 16 33 H 0.04 1.62 6.59 -2.39 -0.02 1.60 16 34 H 0.02 1.25 6.11 -2.38 -0.01 1.23 16 35 H -0.01 -0.68 7.36 -2.39 -0.02 -0.70 16 36 H 0.26 14.99 8.31 -92.72 -0.77 14.22 16 37 H 0.08 1.59 7.78 -2.39 -0.02 1.57 16 38 H 0.13 2.30 7.60 -2.39 -0.02 2.29 16 39 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 40 H 0.11 1.11 7.99 -2.39 -0.02 1.09 16 41 H 0.12 1.25 7.19 -2.39 -0.02 1.23 16 42 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 43 H 0.15 0.61 8.14 -2.39 -0.02 0.59 16 44 H 0.15 0.42 8.14 -2.39 -0.02 0.40 16 45 H 0.14 0.83 8.14 -2.40 -0.02 0.81 16 46 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 47 H 0.10 2.17 7.18 -2.39 -0.02 2.16 16 48 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 49 H 0.06 2.26 5.98 -2.39 -0.01 2.24 16 Total: -1.00 -86.20 394.17 -2.14 -88.34 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: 0.93 Total: 11.06 kcal Atomic # 6 Polarization: 3.15 SS G_CDS: 6.76 Total: 9.91 kcal Atomic # 7 Polarization: -111.94 SS G_CDS: -7.19 Total: -119.13 kcal Atomic # 8 Polarization: -77.26 SS G_CDS: -4.33 Total: -81.59 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Atomic # 16 Polarization: 45.38 SS G_CDS: -0.34 Total: 45.04 kcal Total: -86.20 -2.14 -88.34 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052244294.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.672 kcal (2) G-P(sol) polarization free energy of solvation -86.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds