Wall clock time and date at job start Wed Apr 1 2020 05:45:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.46948 * 2 1 4 4 C 1.50701 * 109.47262 * 119.99308 * 2 1 3 5 5 O 1.21286 * 119.99513 * 88.79504 * 4 2 1 6 6 N 1.34769 * 120.00381 * 268.79727 * 4 2 1 7 7 C 1.46502 * 120.00175 * 184.35897 * 6 4 2 8 8 C 1.46500 * 120.00031 * 4.36103 * 6 4 2 9 9 C 1.50697 * 109.47366 * 85.39100 * 8 6 4 10 10 H 1.08000 * 119.99740 * 0.02562 * 9 8 6 11 11 C 1.37884 * 120.00216 * 180.02562 * 9 8 6 12 12 N 1.31519 * 119.99784 * 0.02562 * 11 9 8 13 13 Si 1.86796 * 119.99900 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47181 * 90.00249 * 13 11 9 15 15 H 1.48505 * 109.46781 * 210.00064 * 13 11 9 16 16 H 1.48493 * 109.47271 * 329.99907 * 13 11 9 17 17 N 1.46894 * 109.47486 * 239.99844 * 2 1 3 18 18 C 1.46857 * 110.99915 * 306.04315 * 17 2 1 19 19 C 1.53031 * 109.52387 * 174.15848 * 18 17 2 20 20 C 1.53118 * 109.27851 * 59.18025 * 19 18 17 21 21 C 1.53119 * 109.16366 * 302.34363 * 20 19 18 22 22 H 1.08995 * 109.50507 * 297.67560 * 21 20 19 23 23 N 1.46496 * 109.50324 * 177.59297 * 21 20 19 24 24 S 1.65600 * 120.00075 * 95.00266 * 23 21 20 25 25 C 1.81406 * 104.44840 * 64.99728 * 24 23 21 26 26 O 1.42094 * 104.27724 * 181.06710 * 24 23 21 27 27 O 1.42100 * 104.27574 * 308.93172 * 24 23 21 28 28 C 1.46844 * 111.00402 * 181.83714 * 17 2 1 29 29 H 1.09001 * 109.46887 * 185.92445 * 1 2 3 30 30 H 1.09003 * 109.47468 * 305.92427 * 1 2 3 31 31 H 1.09000 * 109.47235 * 65.92647 * 1 2 3 32 32 H 1.08997 * 109.47206 * 272.48888 * 7 6 4 33 33 H 1.08997 * 109.46740 * 32.48902 * 7 6 4 34 34 H 1.08998 * 109.46915 * 152.48726 * 7 6 4 35 35 H 1.09007 * 109.47458 * 205.39637 * 8 6 4 36 36 H 1.08999 * 109.46664 * 325.39274 * 8 6 4 37 37 H 0.96996 * 119.99749 * 180.02562 * 12 11 9 38 38 H 1.08996 * 109.45780 * 294.17981 * 18 17 2 39 39 H 1.09007 * 109.45445 * 54.15720 * 18 17 2 40 40 H 1.08997 * 109.50609 * 179.12496 * 19 18 17 41 41 H 1.09000 * 109.50510 * 299.20061 * 19 18 17 42 42 H 1.08998 * 109.52249 * 62.25340 * 20 19 18 43 43 H 1.09006 * 109.52217 * 182.43763 * 20 19 18 44 44 H 0.97007 * 120.00153 * 274.99585 * 23 21 20 45 45 H 1.09009 * 109.46977 * 60.00151 * 25 24 23 46 46 H 1.09001 * 109.47056 * 180.02562 * 25 24 23 47 47 H 1.08994 * 109.47030 * 300.00289 * 25 24 23 48 48 H 1.08997 * 109.46086 * 305.85333 * 28 17 2 49 49 H 1.09002 * 109.46604 * 65.82044 * 28 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 8 2.2136 -1.9093 1.2070 6 7 2.2801 -0.0132 2.3571 7 6 2.8583 -0.6863 3.5227 8 6 1.9711 1.4176 2.4160 9 6 0.5261 1.6041 2.8006 10 1 -0.0995 0.7429 2.9834 11 6 0.0026 2.8742 2.9193 12 7 0.7643 3.9229 2.6962 13 14 -1.7885 3.1053 3.3968 14 1 -1.8997 3.1901 4.8751 15 1 -2.3051 4.3578 2.7888 16 1 -2.5845 1.9518 2.9058 17 7 2.0197 -0.6925 -1.1993 18 6 1.4346 -2.0351 -1.3076 19 6 1.8507 -2.6687 -2.6370 20 6 3.3784 -2.7506 -2.7017 21 6 3.9645 -1.3455 -2.5381 22 1 3.6314 -0.7141 -3.3617 23 7 5.4274 -1.4223 -2.5413 24 16 6.2663 -1.1787 -3.9482 25 6 5.9391 0.5535 -4.3761 26 8 7.6274 -1.3526 -3.5792 27 8 5.6435 -2.0493 -4.8827 28 6 3.4869 -0.7503 -1.2115 29 1 -0.3633 -1.0222 0.1061 30 1 -0.3634 0.6030 0.8322 31 1 -0.3634 0.4192 -0.9383 32 1 2.0593 -1.1095 4.1314 33 1 3.5224 -1.4838 3.1894 34 1 3.4236 0.0336 4.1146 35 1 2.6095 1.8970 3.1582 36 1 2.1482 1.8680 1.4393 37 1 0.3961 4.8163 2.7801 38 1 1.7899 -2.6536 -0.4834 39 1 0.3478 -1.9621 -1.2647 40 1 1.4291 -3.6711 -2.7102 41 1 1.4832 -2.0583 -3.4619 42 1 3.7430 -3.3930 -1.9001 43 1 3.6807 -3.1615 -3.6650 44 1 5.9048 -1.6158 -1.7193 45 1 6.2946 1.1995 -3.5732 46 1 6.4585 0.8036 -5.3012 47 1 4.8672 0.6981 -4.5111 48 1 3.8909 0.2558 -1.0986 49 1 3.8327 -1.3749 -0.3878 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052670520.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:45:26 Heat of formation + Delta-G solvation = -96.839056 kcal Electronic energy + Delta-G solvation = -30766.576106 eV Core-core repulsion = 26663.140927 eV Total energy + Delta-G solvation = -4103.435180 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.25268 -38.24722 -37.23566 -36.13234 -35.42605 -34.94260 -32.87106 -32.63188 -30.28538 -29.72308 -28.64440 -27.77224 -26.31211 -24.37034 -23.21447 -22.78560 -21.66442 -20.18406 -19.54812 -18.28471 -17.78007 -16.77105 -16.64098 -16.48152 -16.37660 -15.95257 -15.11742 -14.84552 -14.66473 -14.58476 -14.47609 -13.93341 -13.57165 -13.55579 -13.45478 -13.38413 -12.93556 -12.61338 -12.44076 -12.29480 -12.21243 -12.16591 -12.02951 -11.89802 -11.69358 -11.57436 -11.43373 -11.28075 -11.13403 -11.08127 -11.01897 -10.86168 -10.69602 -10.37607 -10.19859 -10.13200 -9.82396 -9.62816 -9.51330 -8.65515 -7.83763 -7.72551 -6.28230 -4.34938 0.06975 2.48662 3.16496 3.21526 3.24819 3.29509 3.58016 3.88342 3.99076 4.16819 4.25531 4.48876 4.63242 4.76189 4.81336 5.02716 5.05136 5.18397 5.27413 5.31781 5.42249 5.56413 5.59536 5.66308 5.78433 5.79461 5.90037 5.98019 6.03901 6.07536 6.08114 6.23895 6.27823 6.28460 6.37506 6.41006 6.57895 6.70040 6.79337 6.88338 7.02474 7.21908 7.35149 7.42082 7.66729 7.94708 8.20632 8.68296 8.89384 9.32134 10.78453 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.015821 B = 0.002926 C = 0.002838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.327334 B = 9567.064966 C = 9864.270546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.073 3.927 3 H 0.111 0.889 4 C 0.491 3.509 5 O -0.575 6.575 6 N -0.597 5.597 7 C 0.093 3.907 8 C 0.235 3.765 9 C -0.537 4.537 10 H 0.062 0.938 11 C 0.067 3.933 12 N -0.889 5.889 13 Si 0.895 3.105 14 H -0.280 1.280 15 H -0.284 1.284 16 H -0.271 1.271 17 N -0.511 5.511 18 C 0.024 3.976 19 C -0.113 4.113 20 C -0.136 4.136 21 C 0.161 3.839 22 H 0.089 0.911 23 N -1.114 6.114 24 S 2.615 3.385 25 C -0.674 4.674 26 O -0.964 6.964 27 O -0.956 6.956 28 C 0.040 3.960 29 H 0.049 0.951 30 H 0.098 0.902 31 H 0.065 0.935 32 H 0.046 0.954 33 H 0.058 0.942 34 H 0.064 0.936 35 H 0.036 0.964 36 H 0.039 0.961 37 H 0.266 0.734 38 H 0.082 0.918 39 H 0.075 0.925 40 H 0.067 0.933 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.076 0.924 44 H 0.418 0.582 45 H 0.131 0.869 46 H 0.127 0.873 47 H 0.130 0.870 48 H 0.076 0.924 49 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.492 -5.982 -11.145 14.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.038 4.038 3 H 0.128 0.872 4 C 0.278 3.722 5 O -0.457 6.457 6 N -0.327 5.327 7 C -0.050 4.050 8 C 0.115 3.885 9 C -0.575 4.575 10 H 0.080 0.920 11 C -0.136 4.136 12 N -0.527 5.527 13 Si 0.722 3.278 14 H -0.206 1.206 15 H -0.210 1.210 16 H -0.196 1.196 17 N -0.235 5.235 18 C -0.103 4.103 19 C -0.151 4.151 20 C -0.175 4.175 21 C 0.054 3.946 22 H 0.107 0.893 23 N -0.872 5.872 24 S 2.707 3.293 25 C -0.824 4.824 26 O -0.955 6.955 27 O -0.946 6.946 28 C -0.090 4.090 29 H 0.068 0.932 30 H 0.116 0.884 31 H 0.084 0.916 32 H 0.065 0.935 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.054 0.946 36 H 0.057 0.943 37 H 0.076 0.924 38 H 0.100 0.900 39 H 0.093 0.907 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.095 0.905 44 H 0.252 0.748 45 H 0.149 0.851 46 H 0.145 0.855 47 H 0.149 0.851 48 H 0.095 0.905 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.878 -6.675 -12.190 15.506 hybrid contribution -0.842 0.650 1.703 2.008 sum 6.036 -6.026 -10.487 13.517 Atomic orbital electron populations 1.21931 0.91603 1.02362 1.04355 1.21814 0.98063 0.98837 0.85089 0.87169 1.21708 0.77379 0.87365 0.85725 1.90489 1.55653 1.14925 1.84648 1.48339 1.59844 1.12639 1.11891 1.21434 0.97779 0.97286 0.88536 1.19523 0.96647 0.73893 0.98404 1.21425 0.95441 0.92445 1.48196 0.91954 1.24928 0.98188 0.95706 0.94806 1.69910 1.36095 0.98431 1.48225 0.86543 0.84541 0.77894 0.78836 1.20551 1.20961 1.19602 1.62443 1.05609 1.19323 1.36124 1.22618 0.99971 0.89771 0.97967 1.21556 0.94780 1.00549 0.98251 1.22091 0.96057 0.96345 1.03018 1.20722 0.77533 0.97392 0.98990 0.89313 1.55632 1.15572 1.87898 1.28132 1.04682 0.73443 0.77436 0.73747 1.30542 1.12517 1.27029 1.12337 1.93612 1.33792 1.85893 1.82154 1.93618 1.77074 1.61016 1.62844 1.22387 0.89236 1.01094 0.96279 0.93158 0.88381 0.91649 0.93505 0.92358 0.91750 0.94593 0.94328 0.92407 0.89978 0.90658 0.91454 0.91506 0.91518 0.90488 0.74777 0.85076 0.85491 0.85150 0.90525 0.92854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 8.53 37.16 0.32 -2.15 16 2 C 0.07 1.26 2.29 -68.87 -0.16 1.10 16 3 H 0.11 1.99 5.93 -51.93 -0.31 1.68 16 4 C 0.49 9.43 5.73 -10.99 -0.06 9.37 16 5 O -0.57 -11.73 12.31 5.55 0.07 -11.66 16 6 N -0.60 -11.83 2.87 -182.96 -0.52 -12.35 16 7 C 0.09 1.63 10.42 59.85 0.62 2.26 16 8 C 0.24 5.18 5.02 -5.19 -0.03 5.16 16 9 C -0.54 -12.95 7.30 -34.44 -0.25 -13.20 16 10 H 0.06 1.55 7.57 -52.49 -0.40 1.15 16 11 C 0.07 1.67 5.46 -17.81 -0.10 1.57 16 12 N -0.89 -23.11 13.29 55.43 0.74 -22.37 16 13 Si 0.89 19.51 29.54 -169.99 -5.02 14.49 16 14 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 15 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 16 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 17 N -0.51 -7.52 4.70 -228.08 -1.07 -8.60 16 18 C 0.02 0.34 4.64 -3.83 -0.02 0.33 16 19 C -0.11 -1.34 6.09 -26.65 -0.16 -1.50 16 20 C -0.14 -1.61 5.61 -26.61 -0.15 -1.75 16 21 C 0.16 1.76 2.72 -67.85 -0.18 1.58 16 22 H 0.09 0.84 7.15 -51.93 -0.37 0.47 16 23 N -1.11 -10.47 5.36 -4.82 -0.03 -10.50 16 24 S 2.62 24.19 6.02 -107.50 -0.65 23.54 16 25 C -0.67 -4.16 10.78 101.05 1.09 -3.07 16 26 O -0.96 -12.07 18.08 -57.54 -1.04 -13.11 16 27 O -0.96 -11.87 17.16 -57.54 -0.99 -12.86 16 28 C 0.04 0.53 4.51 -3.83 -0.02 0.51 16 29 H 0.05 0.83 6.56 -51.93 -0.34 0.49 16 30 H 0.10 1.92 5.63 -51.93 -0.29 1.63 16 31 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.06 0.97 7.56 -51.93 -0.39 0.58 16 34 H 0.06 1.02 7.83 -51.93 -0.41 0.62 16 35 H 0.04 0.84 7.82 -51.93 -0.41 0.43 16 36 H 0.04 0.87 5.90 -51.93 -0.31 0.57 16 37 H 0.27 6.63 8.31 -40.82 -0.34 6.29 16 38 H 0.08 1.40 5.33 -51.93 -0.28 1.12 16 39 H 0.08 1.08 6.00 -51.92 -0.31 0.77 16 40 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.08 0.91 7.48 -51.93 -0.39 0.53 16 44 H 0.42 3.62 8.80 -34.47 -0.30 3.32 16 45 H 0.13 0.69 8.14 -51.92 -0.42 0.27 16 46 H 0.13 0.60 8.14 -51.92 -0.42 0.18 16 47 H 0.13 0.71 7.44 -51.93 -0.39 0.32 16 48 H 0.08 0.96 8.12 -51.93 -0.42 0.54 16 49 H 0.05 0.81 6.55 -51.93 -0.34 0.47 16 LS Contribution 386.72 15.07 5.83 5.83 Total: -1.00 -31.38 386.72 -9.53 -40.90 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: -7.74 Total: 6.49 kcal Atomic # 6 Polarization: -0.71 SS G_CDS: 0.90 Total: 0.19 kcal Atomic # 7 Polarization: -52.93 SS G_CDS: -0.89 Total: -53.82 kcal Atomic # 8 Polarization: -35.66 SS G_CDS: -1.96 Total: -37.62 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -5.02 Total: 14.49 kcal Atomic # 16 Polarization: 24.19 SS G_CDS: -0.65 Total: 23.54 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -31.38 -9.53 -40.90 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052670520.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.934 kcal (2) G-P(sol) polarization free energy of solvation -31.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds