Wall clock time and date at job start Wed Apr 1 2020 05:17:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.50727 * 2 1 4 4 C 1.53296 * 109.50651 * 120.09625 * 2 1 3 5 5 N 1.47144 * 108.38551 * 67.62848 * 4 2 1 6 6 S 1.65594 * 120.98246 * 230.50733 * 5 4 2 7 7 O 1.42104 * 106.40395 * 161.31422 * 6 5 4 8 8 O 1.42100 * 106.40449 * 28.39507 * 6 5 4 9 9 N 1.65607 * 107.21911 * 274.85215 * 6 5 4 10 10 C 1.47077 * 120.87952 * 85.21916 * 9 6 5 11 11 C 1.53238 * 108.51959 * 231.20714 * 10 9 6 12 12 N 1.46896 * 109.33858 * 306.16992 * 11 10 9 13 13 C 1.46903 * 110.99900 * 187.25724 * 12 11 10 14 14 C 1.50699 * 109.47251 * 170.00213 * 13 12 11 15 15 H 1.07997 * 119.99817 * 359.97438 * 14 13 12 16 16 C 1.37877 * 119.99891 * 179.97438 * 14 13 12 17 17 N 1.31518 * 120.00208 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 119.99921 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46836 * 60.00018 * 18 16 14 20 20 H 1.48499 * 109.47002 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.46878 * 299.99921 * 18 16 14 22 22 C 1.46892 * 111.27042 * 63.10528 * 12 11 10 23 23 C 1.47076 * 120.88093 * 265.23774 * 9 6 5 24 24 C 1.47152 * 118.03725 * 50.78160 * 5 4 2 25 25 C 1.53714 * 108.16143 * 309.16060 * 24 5 4 26 26 H 1.09007 * 109.69702 * 292.54447 * 25 24 5 27 27 C 1.52999 * 109.44447 * 172.37270 * 25 24 5 28 28 O 1.42956 * 109.14758 * 52.53671 * 25 24 5 29 29 H 1.08998 * 109.47725 * 306.04816 * 1 2 3 30 30 H 1.09004 * 109.46793 * 66.04620 * 1 2 3 31 31 H 1.09003 * 109.47069 * 186.03836 * 1 2 3 32 32 H 1.08994 * 109.68434 * 307.89899 * 4 2 1 33 33 H 1.09006 * 109.67353 * 187.34795 * 4 2 1 34 34 H 1.08999 * 109.62873 * 111.49434 * 10 9 6 35 35 H 1.09004 * 109.78929 * 351.01480 * 10 9 6 36 36 H 1.09008 * 109.49170 * 186.20965 * 11 10 9 37 37 H 1.08997 * 109.49643 * 66.13316 * 11 10 9 38 38 H 1.09003 * 109.46743 * 289.99888 * 13 12 11 39 39 H 1.08999 * 109.47482 * 49.99442 * 13 12 11 40 40 H 0.96994 * 120.00084 * 180.02562 * 17 16 14 41 41 H 1.09003 * 109.49243 * 56.85717 * 22 12 11 42 42 H 1.09003 * 109.49302 * 176.93324 * 22 12 11 43 43 H 1.08993 * 109.63318 * 248.50286 * 23 9 6 44 44 H 1.08999 * 109.62983 * 9.08602 * 23 9 6 45 45 H 1.09000 * 109.68474 * 68.93702 * 24 5 4 46 46 H 1.09002 * 109.68652 * 189.49054 * 24 5 4 47 47 H 1.08994 * 109.47379 * 300.39104 * 27 25 24 48 48 H 1.08999 * 109.47251 * 60.38866 * 27 25 24 49 49 H 1.09006 * 109.47344 * 180.38278 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0419 -0.7246 1.2502 5 7 1.6959 -2.1501 1.1347 6 16 0.9288 -2.9438 2.3691 7 8 0.3608 -4.1159 1.8008 8 8 0.1637 -1.9662 3.0606 9 7 2.0980 -3.4552 3.4246 10 6 2.6057 -2.5636 4.4784 11 6 4.1364 -2.5490 4.4077 12 7 4.6393 -3.9280 4.4651 13 6 6.1041 -3.9501 4.5733 14 6 6.5645 -5.3529 4.8753 15 1 5.8411 -6.1484 4.9771 16 6 7.9090 -5.6208 5.0216 17 7 8.7898 -4.6519 4.8981 18 14 8.4796 -7.3596 5.3967 19 1 8.0496 -8.2682 4.3036 20 1 9.9605 -7.3821 5.5047 21 1 7.8823 -7.8106 6.6792 22 6 4.1850 -4.7095 3.3072 23 6 2.6563 -4.8127 3.3328 24 6 2.0572 -2.8511 -0.1076 25 6 1.5397 -2.0216 -1.2937 26 1 0.4497 -2.0289 -1.2994 27 6 2.0616 -2.6214 -2.6009 28 8 2.0076 -0.6769 -1.1651 29 1 -0.3634 0.6047 0.8308 30 1 -0.3633 0.4173 -0.9392 31 1 -0.3633 -1.0220 0.1081 32 1 1.5703 -0.3030 2.1378 33 1 3.1240 -0.6140 1.3212 34 1 2.2877 -2.9315 5.4539 35 1 2.2224 -1.5549 4.3247 36 1 4.5340 -1.9814 5.2492 37 1 4.4530 -2.0849 3.4736 38 1 6.5430 -3.6184 3.6323 39 1 6.4193 -3.2835 5.3760 40 1 9.7357 -4.8404 5.0007 41 1 4.5010 -4.2154 2.3884 42 1 4.6179 -5.7089 3.3505 43 1 2.3432 -5.3968 4.1981 44 1 2.3063 -5.2915 2.4183 45 1 3.1408 -2.9511 -0.1710 46 1 1.5957 -3.8386 -0.1196 47 1 3.1515 -2.6155 -2.5938 48 1 1.7045 -3.6466 -2.6984 49 1 1.7005 -2.0294 -3.4420 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078518784.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:17:10 Heat of formation + Delta-G solvation = -104.065381 kcal Electronic energy + Delta-G solvation = -31173.287365 eV Core-core repulsion = 27069.538828 eV Total energy + Delta-G solvation = -4103.748537 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.99193 -38.40952 -37.43687 -35.93600 -35.04324 -34.43986 -33.71664 -32.35052 -30.83734 -30.32892 -27.87551 -27.41200 -25.44214 -25.09240 -23.37802 -23.02840 -21.82762 -20.38779 -20.06759 -18.79595 -18.14644 -17.45628 -16.98669 -16.43769 -16.22660 -15.69222 -15.31410 -14.97393 -14.87499 -14.67574 -14.47950 -14.23984 -14.14110 -13.80562 -13.52983 -13.36184 -12.76139 -12.69647 -12.59668 -12.51558 -12.36772 -12.24843 -12.21169 -12.06740 -11.86245 -11.80532 -11.79830 -11.43430 -11.30201 -11.10316 -10.86558 -10.81309 -10.64631 -10.60270 -10.46646 -10.35863 -9.91391 -9.37517 -9.04533 -8.85830 -8.49069 -7.34715 -6.08764 -4.10769 0.45264 2.68459 3.29674 3.34270 3.35606 3.37015 3.43115 4.11003 4.36559 4.38703 4.46183 4.64938 4.70237 4.77049 4.81486 4.89579 4.99428 4.99982 5.06625 5.26317 5.29011 5.33970 5.39668 5.44863 5.47621 5.51646 5.57913 5.59605 5.66188 5.69959 5.74546 5.79205 5.90778 5.94484 5.95931 6.11484 6.23103 6.27434 6.42766 6.47228 6.73316 6.94192 7.19353 7.24746 7.71895 7.99245 8.10007 8.45491 8.96386 9.53968 11.01953 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.015477 B = 0.003160 C = 0.002988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1808.679934 B = 8859.086491 C = 9367.563932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.080 3.920 3 H 0.114 0.886 4 C 0.090 3.910 5 N -1.008 6.008 6 S 2.782 3.218 7 O -0.977 6.977 8 O -0.976 6.976 9 N -1.003 6.003 10 C 0.130 3.870 11 C 0.043 3.957 12 N -0.533 5.533 13 C 0.195 3.805 14 C -0.511 4.511 15 H 0.063 0.937 16 C 0.056 3.944 17 N -0.898 5.898 18 Si 0.899 3.101 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.276 1.276 22 C 0.053 3.947 23 C 0.125 3.875 24 C 0.090 3.910 25 C 0.074 3.926 26 H 0.066 0.934 27 C -0.145 4.145 28 O -0.370 6.370 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.056 0.944 32 H 0.099 0.901 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.025 0.975 38 H -0.010 1.010 39 H 0.031 0.969 40 H 0.262 0.738 41 H 0.023 0.977 42 H 0.096 0.904 43 H 0.078 0.922 44 H 0.083 0.917 45 H 0.079 0.921 46 H 0.102 0.898 47 H 0.067 0.933 48 H 0.075 0.925 49 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.521 8.343 -11.434 21.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.021 3.979 3 H 0.132 0.868 4 C -0.036 4.036 5 N -0.848 5.848 6 S 2.792 3.208 7 O -0.961 6.961 8 O -0.960 6.960 9 N -0.844 5.844 10 C 0.004 3.996 11 C -0.088 4.088 12 N -0.258 5.258 13 C 0.070 3.930 14 C -0.549 4.549 15 H 0.082 0.918 16 C -0.145 4.145 17 N -0.537 5.537 18 Si 0.726 3.274 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.201 1.201 22 C -0.077 4.077 23 C -0.001 4.001 24 C -0.036 4.036 25 C 0.015 3.985 26 H 0.084 0.916 27 C -0.203 4.203 28 O -0.289 6.289 29 H 0.091 0.909 30 H 0.085 0.915 31 H 0.075 0.925 32 H 0.117 0.883 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.096 0.904 36 H 0.098 0.902 37 H 0.044 0.956 38 H 0.008 0.992 39 H 0.049 0.951 40 H 0.072 0.928 41 H 0.041 0.959 42 H 0.114 0.886 43 H 0.096 0.904 44 H 0.101 0.899 45 H 0.097 0.903 46 H 0.120 0.880 47 H 0.086 0.914 48 H 0.093 0.907 49 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -16.346 8.098 -11.025 21.315 hybrid contribution 1.165 -0.534 -0.251 1.305 sum -15.181 7.564 -11.276 20.367 Atomic orbital electron populations 1.22402 0.95975 1.02778 1.03039 1.22477 0.93954 0.96411 0.85061 0.86833 1.22133 1.01629 0.80039 0.99760 1.58291 1.77467 1.18926 1.30088 1.01997 0.73548 0.72846 0.72370 1.93576 1.75776 1.48506 1.78230 1.93587 1.67432 1.61808 1.73147 1.58086 1.59170 1.22177 1.44952 1.21528 0.94710 0.92224 0.91112 1.22373 0.93576 0.92455 1.00363 1.61987 1.15075 1.09283 1.39465 1.19716 0.79428 0.98033 0.95825 1.21105 0.91634 0.94037 1.48138 0.91840 1.24988 0.96724 0.97352 0.95450 1.69943 1.01770 1.31900 1.50131 0.86554 0.77366 0.84449 0.78989 1.20252 1.21379 1.20135 1.22309 0.92668 1.00798 0.91918 1.21675 0.94707 0.81185 1.02508 1.22271 1.01820 0.96352 0.83173 1.22486 0.98405 0.82723 0.94867 0.91588 1.21751 1.02547 1.00666 0.95312 1.88004 1.72458 1.25256 1.43136 0.90857 0.91525 0.92494 0.88303 0.90314 0.90343 0.90370 0.90188 0.95634 0.99174 0.95093 0.92813 0.95851 0.88588 0.90376 0.89862 0.90291 0.88030 0.91375 0.90662 0.91512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.64 8.67 37.16 0.32 -1.32 16 2 C 0.08 0.73 3.93 -26.58 -0.10 0.63 16 3 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16 4 C 0.09 0.90 6.07 -3.54 -0.02 0.88 16 5 N -1.01 -11.60 2.82 -112.83 -0.32 -11.92 16 6 S 2.78 38.41 6.15 -107.50 -0.66 37.75 16 7 O -0.98 -15.34 15.29 -57.17 -0.87 -16.22 16 8 O -0.98 -14.97 15.84 -57.17 -0.91 -15.87 16 9 N -1.00 -14.28 3.39 -113.24 -0.38 -14.67 16 10 C 0.13 1.81 6.51 -3.60 -0.02 1.79 16 11 C 0.04 0.70 5.62 -3.70 -0.02 0.68 16 12 N -0.53 -10.70 4.62 -235.76 -1.09 -11.79 16 13 C 0.19 4.83 4.72 -4.98 -0.02 4.80 16 14 C -0.51 -13.73 8.41 -34.44 -0.29 -14.02 16 15 H 0.06 1.68 7.13 -52.49 -0.37 1.30 16 16 C 0.06 1.55 5.46 -17.82 -0.10 1.46 16 17 N -0.90 -25.98 13.29 55.43 0.74 -25.24 16 18 Si 0.90 21.06 29.54 -169.99 -5.02 16.04 16 19 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 20 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 21 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 22 C 0.05 0.95 5.46 -3.70 -0.02 0.93 16 23 C 0.12 1.86 6.56 -3.60 -0.02 1.84 16 24 C 0.09 0.95 6.04 -3.31 -0.02 0.93 16 25 C 0.07 0.72 3.03 -26.36 -0.08 0.64 16 26 H 0.07 0.63 6.39 -51.93 -0.33 0.30 16 27 C -0.15 -1.13 9.57 37.16 0.36 -0.77 16 28 O -0.37 -3.94 10.22 -35.23 -0.36 -4.30 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.58 6.31 -51.93 -0.33 0.25 16 32 H 0.10 0.93 7.06 -51.93 -0.37 0.57 16 33 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 35 H 0.08 0.92 7.37 -51.93 -0.38 0.54 16 36 H 0.08 1.28 7.99 -51.92 -0.41 0.86 16 37 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 38 H -0.01 -0.26 8.12 -51.93 -0.42 -0.68 16 39 H 0.03 0.82 7.97 -51.93 -0.41 0.41 16 40 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 41 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 42 H 0.10 1.85 6.67 -51.93 -0.35 1.51 16 43 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 44 H 0.08 1.12 7.09 -51.93 -0.37 0.75 16 45 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 46 H 0.10 1.05 6.86 -51.93 -0.36 0.70 16 47 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 48 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 49 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 387.47 15.07 5.84 5.84 Total: -1.00 -32.34 387.47 -11.40 -43.74 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: -8.31 Total: -1.82 kcal Atomic # 6 Polarization: -1.50 SS G_CDS: -0.05 Total: -1.54 kcal Atomic # 7 Polarization: -62.56 SS G_CDS: -1.05 Total: -63.61 kcal Atomic # 8 Polarization: -34.25 SS G_CDS: -2.14 Total: -36.39 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Atomic # 16 Polarization: 38.41 SS G_CDS: -0.66 Total: 37.75 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -32.34 -11.40 -43.74 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078518784.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.326 kcal (2) G-P(sol) polarization free energy of solvation -32.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds