Wall clock time and date at job start Wed Apr 1 2020 05:17:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.50727 * 2 1 4 4 C 1.53296 * 109.50651 * 120.09625 * 2 1 3 5 5 N 1.47144 * 108.38551 * 67.62848 * 4 2 1 6 6 S 1.65594 * 120.98246 * 230.50733 * 5 4 2 7 7 O 1.42104 * 106.40395 * 161.31422 * 6 5 4 8 8 O 1.42100 * 106.40449 * 28.39507 * 6 5 4 9 9 N 1.65607 * 107.21911 * 274.85215 * 6 5 4 10 10 C 1.47077 * 120.87952 * 85.21916 * 9 6 5 11 11 C 1.53238 * 108.51959 * 231.20714 * 10 9 6 12 12 N 1.46896 * 109.33858 * 306.16992 * 11 10 9 13 13 C 1.46903 * 110.99900 * 187.25724 * 12 11 10 14 14 C 1.50699 * 109.47251 * 170.00213 * 13 12 11 15 15 H 1.07997 * 119.99817 * 359.97438 * 14 13 12 16 16 C 1.37877 * 119.99891 * 179.97438 * 14 13 12 17 17 N 1.31518 * 120.00208 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 119.99921 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46836 * 60.00018 * 18 16 14 20 20 H 1.48499 * 109.47002 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.46878 * 299.99921 * 18 16 14 22 22 C 1.46892 * 111.27042 * 63.10528 * 12 11 10 23 23 C 1.47076 * 120.88093 * 265.23774 * 9 6 5 24 24 C 1.47152 * 118.03725 * 50.78160 * 5 4 2 25 25 C 1.53714 * 108.16143 * 309.16060 * 24 5 4 26 26 H 1.09007 * 109.69702 * 292.54447 * 25 24 5 27 27 C 1.52999 * 109.44447 * 172.37270 * 25 24 5 28 28 O 1.42956 * 109.14758 * 52.53671 * 25 24 5 29 29 H 1.08998 * 109.47725 * 306.04816 * 1 2 3 30 30 H 1.09004 * 109.46793 * 66.04620 * 1 2 3 31 31 H 1.09003 * 109.47069 * 186.03836 * 1 2 3 32 32 H 1.08994 * 109.68434 * 307.89899 * 4 2 1 33 33 H 1.09006 * 109.67353 * 187.34795 * 4 2 1 34 34 H 1.08999 * 109.62873 * 111.49434 * 10 9 6 35 35 H 1.09004 * 109.78929 * 351.01480 * 10 9 6 36 36 H 1.09008 * 109.49170 * 186.20965 * 11 10 9 37 37 H 1.08997 * 109.49643 * 66.13316 * 11 10 9 38 38 H 1.09003 * 109.46743 * 289.99888 * 13 12 11 39 39 H 1.08999 * 109.47482 * 49.99442 * 13 12 11 40 40 H 0.96994 * 120.00084 * 180.02562 * 17 16 14 41 41 H 1.09003 * 109.49243 * 56.85717 * 22 12 11 42 42 H 1.09003 * 109.49302 * 176.93324 * 22 12 11 43 43 H 1.08993 * 109.63318 * 248.50286 * 23 9 6 44 44 H 1.08999 * 109.62983 * 9.08602 * 23 9 6 45 45 H 1.09000 * 109.68474 * 68.93702 * 24 5 4 46 46 H 1.09002 * 109.68652 * 189.49054 * 24 5 4 47 47 H 1.08994 * 109.47379 * 300.39104 * 27 25 24 48 48 H 1.08999 * 109.47251 * 60.38866 * 27 25 24 49 49 H 1.09006 * 109.47344 * 180.38278 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0419 -0.7246 1.2502 5 7 1.6959 -2.1501 1.1347 6 16 0.9288 -2.9438 2.3691 7 8 0.3608 -4.1159 1.8008 8 8 0.1637 -1.9662 3.0606 9 7 2.0980 -3.4552 3.4246 10 6 2.6057 -2.5636 4.4784 11 6 4.1364 -2.5490 4.4077 12 7 4.6393 -3.9280 4.4651 13 6 6.1041 -3.9501 4.5733 14 6 6.5645 -5.3529 4.8753 15 1 5.8411 -6.1484 4.9771 16 6 7.9090 -5.6208 5.0216 17 7 8.7898 -4.6519 4.8981 18 14 8.4796 -7.3596 5.3967 19 1 8.0496 -8.2682 4.3036 20 1 9.9605 -7.3821 5.5047 21 1 7.8823 -7.8106 6.6792 22 6 4.1850 -4.7095 3.3072 23 6 2.6563 -4.8127 3.3328 24 6 2.0572 -2.8511 -0.1076 25 6 1.5397 -2.0216 -1.2937 26 1 0.4497 -2.0289 -1.2994 27 6 2.0616 -2.6214 -2.6009 28 8 2.0076 -0.6769 -1.1651 29 1 -0.3634 0.6047 0.8308 30 1 -0.3633 0.4173 -0.9392 31 1 -0.3633 -1.0220 0.1081 32 1 1.5703 -0.3030 2.1378 33 1 3.1240 -0.6140 1.3212 34 1 2.2877 -2.9315 5.4539 35 1 2.2224 -1.5549 4.3247 36 1 4.5340 -1.9814 5.2492 37 1 4.4530 -2.0849 3.4736 38 1 6.5430 -3.6184 3.6323 39 1 6.4193 -3.2835 5.3760 40 1 9.7357 -4.8404 5.0007 41 1 4.5010 -4.2154 2.3884 42 1 4.6179 -5.7089 3.3505 43 1 2.3432 -5.3968 4.1981 44 1 2.3063 -5.2915 2.4183 45 1 3.1408 -2.9511 -0.1710 46 1 1.5957 -3.8386 -0.1196 47 1 3.1515 -2.6155 -2.5938 48 1 1.7045 -3.6466 -2.6984 49 1 1.7005 -2.0294 -3.4420 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078518784.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:17:09 Heat of formation + Delta-G solvation = -128.057671 kcal Electronic energy + Delta-G solvation = -31174.327749 eV Core-core repulsion = 27069.538828 eV Total energy + Delta-G solvation = -4104.788921 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.76464 -39.81194 -38.59664 -37.10275 -36.03677 -35.90280 -34.43571 -34.28117 -32.14192 -31.05437 -29.66647 -28.15889 -26.82423 -26.21385 -24.71070 -23.78596 -23.59320 -21.63282 -20.98077 -19.86536 -19.19358 -18.59698 -18.47617 -17.81227 -17.21709 -16.74829 -16.50989 -16.22942 -15.96364 -15.83344 -15.73375 -15.47690 -15.32161 -15.31465 -14.95455 -14.14000 -14.09078 -13.74664 -13.65321 -13.63055 -13.49185 -13.32979 -13.29559 -13.19238 -12.93719 -12.87619 -12.74032 -12.70384 -12.57927 -12.49930 -12.31887 -12.26955 -12.14565 -12.06091 -11.63861 -11.36881 -11.28240 -11.18003 -10.60035 -10.20411 -9.83420 -9.00400 -8.19334 -6.29013 -0.63783 1.43278 1.45546 1.53287 1.64139 2.28230 2.41449 2.73035 3.05520 3.13359 3.25323 3.53309 3.63541 3.68153 3.93310 4.03919 4.05791 4.10172 4.20849 4.21908 4.30515 4.31216 4.35312 4.36698 4.44582 4.60299 4.68604 4.71423 4.71933 4.80235 4.84166 4.90727 4.97768 4.99346 5.03996 5.05360 5.08681 5.20274 5.21642 5.25875 5.30730 5.34209 5.57850 5.66084 6.05841 6.21239 6.31787 6.62664 6.87036 7.40917 8.91366 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.015477 B = 0.003160 C = 0.002988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1808.679934 B = 8859.086491 C = 9367.563932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.078 3.922 3 H 0.135 0.865 4 C 0.084 3.916 5 N -1.005 6.005 6 S 2.796 3.204 7 O -0.995 6.995 8 O -0.989 6.989 9 N -1.005 6.005 10 C 0.135 3.865 11 C 0.042 3.958 12 N -0.541 5.541 13 C 0.211 3.789 14 C -0.523 4.523 15 H 0.065 0.935 16 C 0.003 3.997 17 N -0.934 5.934 18 Si 0.966 3.034 19 H -0.267 1.267 20 H -0.286 1.286 21 H -0.269 1.269 22 C 0.056 3.944 23 C 0.133 3.867 24 C 0.086 3.914 25 C 0.073 3.927 26 H 0.067 0.933 27 C -0.143 4.143 28 O -0.382 6.382 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.041 0.959 32 H 0.106 0.894 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.104 0.896 36 H 0.081 0.919 37 H 0.027 0.973 38 H -0.038 1.038 39 H 0.006 0.994 40 H 0.264 0.736 41 H 0.021 0.979 42 H 0.078 0.922 43 H 0.080 0.920 44 H 0.101 0.899 45 H 0.078 0.922 46 H 0.103 0.897 47 H 0.063 0.937 48 H 0.088 0.912 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.665 8.206 -11.980 22.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.019 3.981 3 H 0.153 0.847 4 C -0.041 4.041 5 N -0.846 5.846 6 S 2.807 3.193 7 O -0.980 6.980 8 O -0.973 6.973 9 N -0.846 5.846 10 C 0.009 3.991 11 C -0.088 4.088 12 N -0.266 5.266 13 C 0.084 3.916 14 C -0.561 4.561 15 H 0.084 0.916 16 C -0.195 4.195 17 N -0.575 5.575 18 Si 0.791 3.209 19 H -0.191 1.191 20 H -0.212 1.212 21 H -0.195 1.195 22 C -0.074 4.074 23 C 0.007 3.993 24 C -0.040 4.040 25 C 0.014 3.986 26 H 0.085 0.915 27 C -0.200 4.200 28 O -0.301 6.301 29 H 0.099 0.901 30 H 0.093 0.907 31 H 0.060 0.940 32 H 0.124 0.876 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.123 0.877 36 H 0.099 0.901 37 H 0.046 0.954 38 H -0.021 1.021 39 H 0.024 0.976 40 H 0.072 0.928 41 H 0.039 0.961 42 H 0.097 0.903 43 H 0.099 0.901 44 H 0.119 0.881 45 H 0.096 0.904 46 H 0.121 0.879 47 H 0.082 0.918 48 H 0.107 0.893 49 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -17.521 7.963 -11.569 22.455 hybrid contribution 1.497 -0.410 -0.119 1.557 sum -16.024 7.553 -11.687 21.223 Atomic orbital electron populations 1.22399 0.95764 1.02031 1.03861 1.22641 0.94157 0.97160 0.84141 0.84731 1.22326 1.01943 0.79129 1.00690 1.58125 1.77257 1.19561 1.29678 1.01476 0.73305 0.72308 0.72191 1.93547 1.76374 1.49535 1.78506 1.93565 1.68002 1.62010 1.73748 1.58113 1.59060 1.21958 1.45437 1.21538 0.92545 0.93666 0.91323 1.22455 0.95408 0.90347 1.00547 1.61893 1.11974 1.11834 1.40851 1.19345 0.82413 0.96510 0.93287 1.21445 0.91998 0.94979 1.47714 0.91641 1.25870 0.96902 1.01488 0.95207 1.70071 1.02063 1.34111 1.51236 0.85481 0.76784 0.79486 0.79134 1.19141 1.21157 1.19452 1.22277 0.94763 0.99393 0.90939 1.21563 0.92254 0.81861 1.03583 1.22400 1.01829 0.96647 0.83105 1.22571 0.98517 0.82366 0.95155 0.91473 1.21768 1.02265 1.01462 0.94526 1.87997 1.72777 1.25643 1.43701 0.90125 0.90652 0.93976 0.87610 0.90097 0.90057 0.87747 0.90056 0.95444 1.02073 0.97600 0.92756 0.96064 0.90319 0.90134 0.88116 0.90396 0.87913 0.91774 0.89317 0.90914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.92 8.67 71.98 0.62 -2.30 16 2 C 0.08 1.28 3.93 30.69 0.12 1.40 16 3 H 0.14 1.62 8.14 -2.38 -0.02 1.60 16 4 C 0.08 1.54 6.07 86.36 0.52 2.07 16 5 N -1.01 -21.69 2.82 -510.87 -1.44 -23.13 16 6 S 2.80 72.80 6.15 -56.49 -0.35 72.45 16 7 O -1.00 -29.82 15.29 -128.00 -1.96 -31.78 16 8 O -0.99 -28.49 15.84 -128.00 -2.03 -30.52 16 9 N -1.01 -27.10 3.39 -512.18 -1.73 -28.84 16 10 C 0.13 3.53 6.51 86.35 0.56 4.09 16 11 C 0.04 1.36 5.62 86.38 0.49 1.85 16 12 N -0.54 -21.84 4.62 -899.82 -4.16 -26.00 16 13 C 0.21 10.75 4.72 85.56 0.40 11.15 16 14 C -0.52 -28.53 8.41 25.60 0.22 -28.32 16 15 H 0.07 3.47 7.13 -2.91 -0.02 3.45 16 16 C 0.00 0.19 5.46 84.65 0.46 0.65 16 17 N -0.93 -55.03 13.29 21.45 0.28 -54.74 16 18 Si 0.97 43.18 29.54 68.60 2.03 45.21 16 19 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 20 H -0.29 -12.60 7.11 99.48 0.71 -11.89 16 21 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 22 C 0.06 2.00 5.46 86.39 0.47 2.47 16 23 C 0.13 3.82 6.56 86.35 0.57 4.38 16 24 C 0.09 1.71 6.04 86.50 0.52 2.23 16 25 C 0.07 1.31 3.03 30.83 0.09 1.41 16 26 H 0.07 1.19 6.39 -2.38 -0.02 1.17 16 27 C -0.14 -2.01 9.57 71.98 0.69 -1.32 16 28 O -0.38 -7.53 10.22 -148.98 -1.52 -9.05 16 29 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 31 H 0.04 0.79 6.31 -2.39 -0.02 0.78 16 32 H 0.11 1.78 7.06 -2.39 -0.02 1.76 16 33 H 0.08 1.45 8.14 -2.38 -0.02 1.43 16 34 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 35 H 0.10 2.22 7.37 -2.38 -0.02 2.20 16 36 H 0.08 2.59 7.99 -2.38 -0.02 2.57 16 37 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 38 H -0.04 -2.14 8.12 -2.39 -0.02 -2.16 16 39 H 0.01 0.33 7.97 -2.39 -0.02 0.31 16 40 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 41 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 42 H 0.08 3.06 6.67 -2.39 -0.02 3.05 16 43 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 44 H 0.10 2.56 7.09 -2.39 -0.02 2.54 16 45 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 46 H 0.10 2.01 6.86 -2.39 -0.02 1.99 16 47 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 48 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 49 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 Total: -1.00 -68.86 387.47 -4.21 -73.07 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: 0.92 Total: 13.56 kcal Atomic # 6 Polarization: -5.97 SS G_CDS: 5.74 Total: -0.23 kcal Atomic # 7 Polarization: -125.67 SS G_CDS: -7.05 Total: -132.71 kcal Atomic # 8 Polarization: -65.84 SS G_CDS: -5.51 Total: -71.35 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Atomic # 16 Polarization: 72.80 SS G_CDS: -0.35 Total: 72.45 kcal Total: -68.86 -4.21 -73.07 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078518784.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.988 kcal (2) G-P(sol) polarization free energy of solvation -68.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds