Wall clock time and date at job start Wed Apr 1 2020 04:57:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.46888 * 2 1 4 4 N 1.46496 * 109.47212 * 240.00051 * 2 1 3 5 5 S 1.65600 * 120.00152 * 94.99935 * 4 2 1 6 6 O 1.42099 * 106.40315 * 311.45883 * 5 4 2 7 7 O 1.42103 * 106.40263 * 178.54092 * 5 4 2 8 8 N 1.65596 * 107.21673 * 65.00001 * 5 4 2 9 9 C 1.46500 * 120.00164 * 90.00269 * 8 5 4 10 10 C 1.46495 * 119.99960 * 269.99700 * 8 5 4 11 11 C 1.50704 * 109.47679 * 265.00214 * 10 8 5 12 12 H 1.08006 * 119.99534 * 359.97438 * 11 10 8 13 13 C 1.37871 * 120.00219 * 180.02562 * 11 10 8 14 14 N 1.31512 * 120.00329 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 119.99779 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.46865 * 90.00295 * 15 13 11 17 17 H 1.48500 * 109.46794 * 210.00007 * 15 13 11 18 18 H 1.48494 * 109.47134 * 329.99806 * 15 13 11 19 19 C 1.50693 * 109.46853 * 119.99808 * 2 1 3 20 20 O 1.21290 * 119.99844 * 112.50497 * 19 2 1 21 21 N 1.34773 * 120.00472 * 292.50215 * 19 2 1 22 22 C 1.46926 * 120.62719 * 5.78861 * 21 19 2 23 23 C 1.52768 * 109.00625 * 233.58215 * 22 21 19 24 24 C 1.53034 * 109.38330 * 305.58589 * 23 22 21 25 25 C 1.53040 * 109.53834 * 61.24519 * 24 23 22 26 26 C 1.46927 * 120.63464 * 186.06752 * 21 19 2 27 27 H 1.09002 * 109.58462 * 246.29818 * 26 21 19 28 28 C 1.52996 * 109.58553 * 6.57908 * 26 21 19 29 29 H 1.09005 * 109.47053 * 294.57370 * 1 2 3 30 30 H 1.09004 * 109.47311 * 54.57265 * 1 2 3 31 31 H 1.08997 * 109.47260 * 174.57137 * 1 2 3 32 32 H 0.96994 * 120.00095 * 275.00299 * 4 2 1 33 33 H 1.08995 * 109.47070 * 270.00243 * 9 8 5 34 34 H 1.08993 * 109.47445 * 149.99212 * 9 8 5 35 35 H 1.09004 * 109.47079 * 29.99803 * 9 8 5 36 36 H 1.08999 * 109.47213 * 25.00293 * 10 8 5 37 37 H 1.09007 * 109.47157 * 145.00213 * 10 8 5 38 38 H 0.96994 * 120.00431 * 179.97438 * 14 13 11 39 39 H 1.09001 * 109.58915 * 353.41172 * 22 21 19 40 40 H 1.08997 * 109.59008 * 113.84306 * 22 21 19 41 41 H 1.09001 * 109.56492 * 185.55126 * 23 22 21 42 42 H 1.09004 * 109.38590 * 65.51676 * 23 22 21 43 43 H 1.08991 * 109.46691 * 301.22157 * 24 23 22 44 44 H 1.09003 * 109.45820 * 181.25528 * 24 23 22 45 45 H 1.08996 * 109.49871 * 178.68263 * 25 24 23 46 46 H 1.08993 * 109.52644 * 58.59538 * 25 24 23 47 47 H 1.09007 * 109.47353 * 52.49100 * 28 26 21 48 48 H 1.09006 * 109.47058 * 172.48464 * 28 26 21 49 49 H 1.08997 * 109.47847 * 292.48933 * 28 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6906 -1.1961 5 16 2.4122 0.1772 -2.5505 6 8 1.3247 1.0593 -2.7922 7 8 2.8777 -0.7635 -3.5085 8 7 3.7097 1.1300 -2.1620 9 6 5.0719 0.6263 -2.3538 10 6 3.4953 2.4767 -1.6266 11 6 3.5531 3.4792 -2.7504 12 1 3.7320 3.1464 -3.7622 13 6 3.3785 4.8211 -2.4867 14 7 3.1621 5.2265 -1.2545 15 14 3.4508 6.0638 -3.8796 16 1 2.0910 6.2524 -4.4457 17 1 3.9551 7.3604 -3.3604 18 1 4.3638 5.5664 -4.9398 19 6 2.0323 -0.7103 1.2304 20 8 2.6135 -1.7696 1.1244 21 7 1.8358 -0.1687 2.4488 22 6 1.0255 1.0469 2.6056 23 6 1.8381 2.0914 3.3690 24 6 2.3295 1.4887 4.6870 25 6 3.2340 0.2891 4.3956 26 6 2.4327 -0.7789 3.6446 27 1 1.6440 -1.1674 4.2890 28 6 3.3631 -1.9198 3.2281 29 1 -0.3633 0.4274 0.9346 30 1 -0.3634 0.5957 -0.8374 31 1 -0.3633 -1.0230 -0.0972 32 1 2.1110 -1.6561 -1.1949 33 1 5.4034 0.1208 -1.4468 34 1 5.7403 1.4595 -2.5704 35 1 5.0856 -0.0764 -3.1870 36 1 2.5181 2.5254 -1.1462 37 1 4.2713 2.7050 -0.8959 38 1 3.0396 6.1706 -1.0689 39 1 0.7603 1.4386 1.6236 40 1 0.1197 0.8127 3.1647 41 1 1.2130 2.9598 3.5767 42 1 2.6941 2.3951 2.7662 43 1 1.4740 1.1631 5.2788 44 1 2.8906 2.2399 5.2429 45 1 3.6024 -0.1252 5.3340 46 1 4.0771 0.6089 3.7832 47 1 4.0726 -1.5570 2.4844 48 1 3.9056 -2.2833 4.1009 49 1 2.7740 -2.7321 2.8022 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000102411856.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:34 Heat of formation + Delta-G solvation = -99.056047 kcal Electronic energy + Delta-G solvation = -31502.376702 eV Core-core repulsion = 27398.845386 eV Total energy + Delta-G solvation = -4103.531316 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.76735 -37.65743 -36.66758 -35.65240 -35.42428 -35.14846 -33.09613 -32.68006 -32.46448 -29.52927 -27.79807 -27.70970 -25.12981 -25.05124 -23.81785 -22.34761 -22.20257 -20.84556 -19.45541 -18.91817 -17.54644 -16.87205 -16.54295 -16.44205 -16.13825 -15.82678 -15.26601 -14.92594 -14.62717 -14.39520 -14.31030 -13.83695 -13.65084 -13.51225 -13.40338 -13.27591 -12.97794 -12.64924 -12.34164 -12.24914 -12.18763 -11.98474 -11.79159 -11.71629 -11.57668 -11.49280 -11.26895 -11.16082 -11.15189 -11.10349 -11.06586 -10.77864 -10.72146 -10.62887 -10.56172 -10.07451 -9.78739 -9.56761 -8.97007 -8.65167 -8.47901 -8.09329 -6.11232 -4.14513 1.20249 2.57335 2.82749 3.30517 3.36345 3.40283 3.52913 4.10532 4.36168 4.42238 4.60775 4.66524 4.75986 4.89851 4.96750 5.01510 5.10206 5.11008 5.19604 5.24141 5.29591 5.40665 5.45989 5.52429 5.65486 5.68860 5.73376 5.78446 5.81568 5.90540 5.93785 6.00229 6.08165 6.10618 6.23488 6.26672 6.29455 6.35132 6.54098 6.61304 7.08051 7.19454 7.32413 7.37826 7.57921 7.87055 8.14193 8.15614 8.87791 9.50983 10.97291 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010792 B = 0.004469 C = 0.003641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2593.852055 B = 6264.509049 C = 7688.460923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.134 3.866 3 H 0.114 0.886 4 N -1.116 6.116 5 S 2.782 3.218 6 O -0.961 6.961 7 O -0.994 6.994 8 N -0.998 5.998 9 C 0.097 3.903 10 C 0.257 3.743 11 C -0.527 4.527 12 H 0.061 0.939 13 C 0.064 3.936 14 N -0.896 5.896 15 Si 0.896 3.104 16 H -0.278 1.278 17 H -0.286 1.286 18 H -0.273 1.273 19 C 0.519 3.481 20 O -0.527 6.527 21 N -0.607 5.607 22 C 0.096 3.904 23 C -0.140 4.140 24 C -0.119 4.119 25 C -0.133 4.133 26 C 0.145 3.855 27 H 0.069 0.931 28 C -0.139 4.139 29 H 0.075 0.925 30 H 0.087 0.913 31 H 0.065 0.935 32 H 0.416 0.584 33 H 0.039 0.961 34 H 0.077 0.923 35 H 0.066 0.934 36 H 0.035 0.965 37 H 0.034 0.966 38 H 0.263 0.737 39 H 0.098 0.902 40 H 0.072 0.928 41 H 0.079 0.921 42 H 0.076 0.924 43 H 0.061 0.939 44 H 0.066 0.934 45 H 0.072 0.928 46 H 0.069 0.931 47 H 0.067 0.933 48 H 0.042 0.958 49 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.204 -9.628 13.595 16.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.022 3.978 3 H 0.131 0.869 4 N -0.874 5.874 5 S 2.789 3.211 6 O -0.944 6.944 7 O -0.978 6.978 8 N -0.841 5.841 9 C -0.050 4.050 10 C 0.135 3.865 11 C -0.567 4.567 12 H 0.079 0.921 13 C -0.139 4.139 14 N -0.535 5.535 15 Si 0.724 3.276 16 H -0.204 1.204 17 H -0.212 1.212 18 H -0.198 1.198 19 C 0.306 3.694 20 O -0.403 6.403 21 N -0.341 5.341 22 C -0.027 4.027 23 C -0.178 4.178 24 C -0.156 4.156 25 C -0.171 4.171 26 C 0.042 3.958 27 H 0.087 0.913 28 C -0.196 4.196 29 H 0.094 0.906 30 H 0.106 0.894 31 H 0.084 0.916 32 H 0.251 0.749 33 H 0.058 0.942 34 H 0.096 0.904 35 H 0.084 0.916 36 H 0.052 0.948 37 H 0.052 0.948 38 H 0.073 0.927 39 H 0.116 0.884 40 H 0.090 0.910 41 H 0.098 0.902 42 H 0.095 0.905 43 H 0.080 0.920 44 H 0.084 0.916 45 H 0.090 0.910 46 H 0.088 0.912 47 H 0.086 0.914 48 H 0.061 0.939 49 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -3.370 -9.878 12.799 16.515 hybrid contribution 0.305 0.604 -0.189 0.702 sum -3.065 -9.275 12.611 15.951 Atomic orbital electron populations 1.22498 0.92920 1.03733 1.04329 1.20628 0.95957 0.97019 0.84156 0.86874 1.56174 1.82231 1.20056 1.28989 1.01991 0.73810 0.72491 0.72794 1.93627 1.52553 1.64861 1.83335 1.93542 1.82071 1.63987 1.58250 1.57619 1.18228 1.27287 1.80955 1.21333 0.83956 0.99801 0.99887 1.19078 0.97094 0.75713 0.94662 1.21478 1.49253 0.91445 0.94499 0.92113 1.24902 0.94817 0.98323 0.95814 1.69897 1.49038 1.15968 1.18607 0.86520 0.78560 0.80325 0.82200 1.20382 1.21172 1.19805 1.20737 0.78865 0.85501 0.84289 1.90706 1.41790 1.21915 1.85912 1.48114 1.51681 1.28004 1.06340 1.22000 0.93563 0.84600 1.02535 1.21889 1.01296 0.97917 0.96744 1.21510 0.99381 0.97455 0.97282 1.22029 0.98817 0.95896 1.00376 1.21270 0.95367 0.93408 0.85754 0.91276 1.22197 0.99563 0.97916 0.99915 0.90638 0.89366 0.91594 0.74900 0.94232 0.90392 0.91551 0.94750 0.94785 0.92710 0.88364 0.91021 0.90206 0.90545 0.91986 0.91551 0.90950 0.91180 0.91382 0.93931 0.90556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.21 9.03 37.16 0.34 -1.87 16 2 C 0.13 1.99 2.37 -69.09 -0.16 1.82 16 3 H 0.11 1.80 5.65 -51.93 -0.29 1.51 16 4 N -1.12 -18.03 5.37 -5.89 -0.03 -18.06 16 5 S 2.78 55.80 6.01 -107.50 -0.65 55.15 16 6 O -0.96 -22.11 16.47 -57.17 -0.94 -23.05 16 7 O -0.99 -21.36 16.74 -57.17 -0.96 -22.32 16 8 N -1.00 -20.76 3.23 -123.05 -0.40 -21.16 16 9 C 0.10 1.73 10.68 59.85 0.64 2.37 16 10 C 0.26 6.18 4.78 -5.19 -0.02 6.15 16 11 C -0.53 -14.42 9.38 -34.44 -0.32 -14.74 16 12 H 0.06 1.69 7.81 -52.48 -0.41 1.28 16 13 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 14 N -0.90 -24.90 13.29 55.43 0.74 -24.16 16 15 Si 0.90 21.36 29.54 -169.99 -5.02 16.34 16 16 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 17 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 18 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 19 C 0.52 7.36 6.90 -10.99 -0.08 7.29 16 20 O -0.53 -8.39 11.54 5.55 0.06 -8.32 16 21 N -0.61 -7.11 2.98 -165.48 -0.49 -7.61 16 22 C 0.10 0.95 5.04 -3.93 -0.02 0.93 16 23 C -0.14 -1.38 6.06 -26.83 -0.16 -1.54 16 24 C -0.12 -1.00 5.89 -26.69 -0.16 -1.16 16 25 C -0.13 -1.23 5.37 -26.61 -0.14 -1.37 16 26 C 0.14 1.51 3.49 -67.60 -0.24 1.27 16 27 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 28 C -0.14 -1.62 7.61 37.16 0.28 -1.34 16 29 H 0.07 0.75 5.30 -51.93 -0.28 0.48 16 30 H 0.09 1.24 7.74 -51.93 -0.40 0.84 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.42 6.23 8.13 -34.47 -0.28 5.95 16 33 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.08 1.39 8.07 -51.93 -0.42 0.97 16 35 H 0.07 1.14 7.02 -51.93 -0.36 0.77 16 36 H 0.03 0.85 6.20 -51.93 -0.32 0.53 16 37 H 0.03 0.84 8.11 -51.93 -0.42 0.42 16 38 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 39 H 0.10 1.04 4.50 -51.93 -0.23 0.80 16 40 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 44 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 46 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 47 H 0.07 0.95 6.84 -51.93 -0.36 0.59 16 48 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 49 H 0.08 1.00 6.66 -51.93 -0.35 0.65 16 LS Contribution 388.45 15.07 5.85 5.85 Total: -1.00 -32.85 388.45 -9.89 -42.73 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: -7.91 Total: 5.15 kcal Atomic # 6 Polarization: -0.39 SS G_CDS: -0.15 Total: -0.54 kcal Atomic # 7 Polarization: -70.81 SS G_CDS: -0.18 Total: -70.99 kcal Atomic # 8 Polarization: -51.86 SS G_CDS: -1.83 Total: -53.70 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: 55.80 SS G_CDS: -0.65 Total: 55.15 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -32.85 -9.89 -42.73 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000102411856.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.322 kcal (2) G-P(sol) polarization free energy of solvation -32.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds