Wall clock time and date at job start Wed Apr 1 2020 04:11:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47197 * 2 1 4 4 N 1.46506 * 109.47182 * 120.00044 * 2 1 3 5 5 C 1.34773 * 119.99969 * 84.72073 * 4 2 1 6 6 O 1.21281 * 120.00220 * 0.02562 * 5 4 2 7 7 C 1.50706 * 120.00080 * 180.02562 * 5 4 2 8 8 N 1.46889 * 109.47109 * 180.02562 * 7 5 4 9 9 C 1.46905 * 110.99928 * 294.29930 * 8 7 5 10 10 C 1.53241 * 109.33809 * 172.74808 * 9 8 7 11 11 N 1.47086 * 108.51937 * 53.83507 * 10 9 8 12 12 S 1.65603 * 120.88199 * 128.83704 * 11 10 9 13 13 O 1.42098 * 104.27462 * 26.04578 * 12 11 10 14 14 O 1.42100 * 104.27610 * 153.90063 * 12 11 10 15 15 C 1.81396 * 104.44617 * 269.97298 * 12 11 10 16 16 C 1.52999 * 109.46872 * 180.02562 * 15 12 11 17 17 C 1.50699 * 109.47329 * 179.97438 * 16 15 12 18 18 H 1.08000 * 119.99772 * 0.02562 * 17 16 15 19 19 C 1.37877 * 120.00558 * 179.97438 * 17 16 15 20 20 N 1.31519 * 119.99694 * 0.02562 * 19 17 16 21 21 Si 1.86789 * 120.00314 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47387 * 0.02562 * 21 19 17 23 23 H 1.48498 * 109.47328 * 120.00129 * 21 19 17 24 24 H 1.48509 * 109.47285 * 240.00179 * 21 19 17 25 25 C 1.47079 * 118.23440 * 308.80912 * 11 10 9 26 26 C 1.46904 * 110.99974 * 170.00183 * 8 7 5 27 27 H 1.09007 * 109.47360 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47379 * 300.00069 * 1 2 3 29 29 H 1.09002 * 109.47097 * 60.00557 * 1 2 3 30 30 H 1.09005 * 109.47189 * 239.99632 * 2 1 3 31 31 H 1.09005 * 109.47224 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.47121 * 299.99952 * 3 2 1 33 33 H 1.08997 * 109.47013 * 59.99707 * 3 2 1 34 34 H 0.97005 * 119.99811 * 265.00126 * 4 2 1 35 35 H 1.09004 * 109.46762 * 300.00389 * 7 5 4 36 36 H 1.08998 * 109.46924 * 59.99727 * 7 5 4 37 37 H 1.08997 * 109.49012 * 292.70693 * 9 8 7 38 38 H 1.08996 * 109.49247 * 52.79249 * 9 8 7 39 39 H 1.08997 * 109.63227 * 294.11912 * 10 9 8 40 40 H 1.09003 * 109.62558 * 173.53938 * 10 9 8 41 41 H 1.08998 * 109.47626 * 299.99903 * 15 12 11 42 42 H 1.09005 * 109.47127 * 60.00202 * 15 12 11 43 43 H 1.09003 * 109.47143 * 299.99896 * 16 15 12 44 44 H 1.08999 * 109.47505 * 60.00265 * 16 15 12 45 45 H 0.96992 * 120.00111 * 179.97438 * 20 19 17 46 46 H 1.09006 * 109.63047 * 291.47633 * 25 11 10 47 47 H 1.09005 * 109.62284 * 170.89994 * 25 11 10 48 48 H 1.09001 * 109.48876 * 307.21059 * 26 8 7 49 49 H 1.09003 * 109.49296 * 67.28810 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1417 -2.0327 1.1963 6 8 1.8489 -2.6687 0.2060 7 6 2.6435 -2.7432 2.4270 8 7 2.6873 -4.1895 2.1737 9 6 1.3359 -4.7304 1.9758 10 6 1.4348 -6.1954 1.5375 11 7 2.2580 -6.9214 2.5167 12 16 1.7195 -8.3293 3.2024 13 8 0.8128 -8.8605 2.2459 14 8 2.9078 -9.0261 3.5514 15 6 0.8329 -7.7966 4.6926 16 6 0.2814 -9.0225 5.4234 17 6 -0.4546 -8.5801 6.6618 18 1 -0.5226 -7.5296 6.9032 19 6 -1.0421 -9.5163 7.4861 20 7 -0.9597 -10.7955 7.1919 21 14 -1.9550 -8.9678 9.0207 22 1 -1.9037 -7.4874 9.1247 23 1 -3.3705 -9.4090 8.9388 24 1 -1.3170 -9.5711 10.2184 25 6 3.5724 -6.3640 2.8701 26 6 3.3893 -4.8924 3.2559 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9563 0.8899 34 1 2.2490 -0.1823 1.9895 35 1 3.6446 -2.3867 2.6695 36 1 1.9733 -2.5403 3.2623 37 1 0.7783 -4.6671 2.9103 38 1 0.8227 -4.1543 1.2058 39 1 1.9004 -6.2527 0.5536 40 1 0.4379 -6.6346 1.5001 41 1 1.5168 -7.2595 5.3498 42 1 0.0095 -7.1404 4.4105 43 1 -0.4024 -9.5600 4.7665 44 1 1.1050 -9.6783 5.7056 45 1 -1.3726 -11.4541 7.7719 46 1 4.2435 -6.4375 2.0143 47 1 3.9887 -6.9147 3.7137 48 1 4.3654 -4.4337 3.4143 49 1 2.8031 -4.8268 4.1726 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000111325698.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:11:54 Heat of formation + Delta-G solvation = -103.670629 kcal Electronic energy + Delta-G solvation = -29346.359151 eV Core-core repulsion = 25242.627732 eV Total energy + Delta-G solvation = -4103.731419 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.35806 -38.65282 -36.62169 -36.30419 -35.41526 -34.50243 -33.88617 -32.04533 -31.17659 -31.15570 -28.60620 -27.67242 -25.62126 -24.89244 -23.86616 -21.90864 -21.64470 -20.76644 -20.39161 -18.49316 -17.60766 -17.41584 -16.67678 -16.44463 -15.98853 -15.72934 -15.47477 -15.15791 -14.95338 -14.82193 -14.56124 -14.48667 -14.39311 -13.91779 -13.48979 -13.37470 -13.26527 -12.80669 -12.70575 -12.54680 -12.34839 -12.21217 -12.07512 -11.82834 -11.75291 -11.61679 -11.53925 -11.41104 -11.30571 -11.16281 -11.10522 -10.96375 -10.78216 -10.39610 -10.39253 -10.00912 -9.74475 -9.45058 -9.31609 -8.84114 -8.51600 -8.43590 -6.13306 -4.18823 0.78714 2.38431 2.68712 3.05132 3.23729 3.30872 3.33994 3.70264 4.30819 4.31506 4.40212 4.51827 4.58581 4.60236 4.62799 4.79408 4.83471 4.91439 5.00745 5.11560 5.19404 5.21770 5.23504 5.24911 5.32284 5.33579 5.39050 5.47564 5.52836 5.62769 5.65440 5.71231 5.77701 5.84591 5.90007 6.07963 6.09559 6.16654 6.49124 6.68929 6.71014 6.82950 7.18435 7.30137 7.36363 7.79619 7.97697 8.17039 8.84644 9.45780 10.97754 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.013072 B = 0.002478 C = 0.002230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2141.387165 B =11297.177505 C =12555.619774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.137 3.863 3 C -0.160 4.160 4 N -0.733 5.733 5 C 0.514 3.486 6 O -0.517 6.517 7 C 0.035 3.965 8 N -0.518 5.518 9 C 0.035 3.965 10 C 0.132 3.868 11 N -1.009 6.009 12 S 2.592 3.408 13 O -0.963 6.963 14 O -0.964 6.964 15 C -0.590 4.590 16 C 0.028 3.972 17 C -0.519 4.519 18 H 0.061 0.939 19 C 0.057 3.943 20 N -0.890 5.890 21 Si 0.900 3.100 22 H -0.273 1.273 23 H -0.282 1.282 24 H -0.282 1.282 25 C 0.130 3.870 26 C 0.040 3.960 27 H 0.061 0.939 28 H 0.055 0.945 29 H 0.064 0.936 30 H 0.088 0.912 31 H 0.061 0.939 32 H 0.072 0.928 33 H 0.060 0.940 34 H 0.398 0.602 35 H 0.104 0.896 36 H 0.064 0.936 37 H 0.037 0.963 38 H 0.101 0.899 39 H 0.078 0.922 40 H 0.093 0.907 41 H 0.116 0.884 42 H 0.116 0.884 43 H 0.033 0.967 44 H 0.033 0.967 45 H 0.264 0.736 46 H 0.076 0.924 47 H 0.095 0.905 48 H 0.086 0.914 49 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.282 25.315 -11.313 28.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.033 3.967 3 C -0.218 4.218 4 N -0.386 5.386 5 C 0.300 3.700 6 O -0.391 6.391 7 C -0.096 4.096 8 N -0.243 5.243 9 C -0.094 4.094 10 C 0.006 3.994 11 N -0.846 5.846 12 S 2.690 3.310 13 O -0.953 6.953 14 O -0.954 6.954 15 C -0.723 4.723 16 C -0.011 4.011 17 C -0.558 4.558 18 H 0.079 0.921 19 C -0.146 4.146 20 N -0.528 5.528 21 Si 0.727 3.273 22 H -0.197 1.197 23 H -0.208 1.208 24 H -0.208 1.208 25 C 0.004 3.996 26 C -0.089 4.089 27 H 0.081 0.919 28 H 0.075 0.925 29 H 0.083 0.917 30 H 0.106 0.894 31 H 0.080 0.920 32 H 0.091 0.909 33 H 0.079 0.921 34 H 0.232 0.768 35 H 0.122 0.878 36 H 0.082 0.918 37 H 0.055 0.945 38 H 0.119 0.881 39 H 0.096 0.904 40 H 0.111 0.889 41 H 0.135 0.865 42 H 0.135 0.865 43 H 0.051 0.949 44 H 0.051 0.949 45 H 0.074 0.926 46 H 0.095 0.905 47 H 0.113 0.887 48 H 0.105 0.895 49 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 8.459 23.697 -12.827 28.242 hybrid contribution -1.087 1.287 2.489 3.006 sum 7.372 24.984 -10.338 28.025 Atomic orbital electron populations 1.22193 0.95259 1.02793 1.02042 1.20914 0.94171 0.92717 0.88928 1.22076 1.01696 0.95090 1.02938 1.46141 1.68599 1.07053 1.16847 1.20605 0.77531 0.81985 0.89903 1.90697 1.48224 1.65455 1.34723 1.21970 1.02752 0.90030 0.94883 1.61556 1.18873 1.00532 1.43343 1.22710 0.88884 0.96617 1.01170 1.21393 0.95494 0.90071 0.92401 1.58080 1.26200 1.44442 1.55867 1.05696 0.74973 0.73387 0.76925 1.93536 1.66492 1.76290 1.58999 1.93531 1.46226 1.70292 1.85374 1.30507 1.12529 1.11615 1.17641 1.18962 0.97088 0.89021 0.96039 1.21026 1.34398 0.93343 1.07049 0.92124 1.25079 0.96283 0.94911 0.98308 1.69965 1.44249 1.00376 1.38181 0.86417 0.79515 0.78731 0.82619 1.19725 1.20788 1.20783 1.21402 0.84399 0.92121 1.01690 1.22575 0.99131 0.95173 0.92064 0.91950 0.92541 0.91663 0.89403 0.91973 0.90941 0.92086 0.76794 0.87768 0.91786 0.94503 0.88055 0.90405 0.88882 0.86514 0.86509 0.94865 0.94857 0.92574 0.90522 0.88673 0.89544 0.93799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.04 9.48 37.16 0.35 -0.69 16 2 C 0.14 0.84 3.18 -67.93 -0.22 0.63 16 3 C -0.16 -0.59 9.38 37.16 0.35 -0.24 16 4 N -0.73 -4.45 5.08 -53.80 -0.27 -4.72 16 5 C 0.51 4.68 7.45 -10.98 -0.08 4.59 16 6 O -0.52 -6.78 14.00 5.56 0.08 -6.70 16 7 C 0.03 0.27 5.45 -4.98 -0.03 0.24 16 8 N -0.52 -5.44 4.37 -235.76 -1.03 -6.47 16 9 C 0.04 0.41 5.26 -3.70 -0.02 0.39 16 10 C 0.13 1.77 6.47 -3.60 -0.02 1.75 16 11 N -1.01 -14.59 3.26 -113.23 -0.37 -14.96 16 12 S 2.59 48.03 5.42 -107.50 -0.58 47.45 16 13 O -0.96 -20.56 16.79 -57.54 -0.97 -21.53 16 14 O -0.96 -20.21 16.79 -57.54 -0.97 -21.18 16 15 C -0.59 -11.41 6.12 37.16 0.23 -11.18 16 16 C 0.03 0.72 4.98 -27.88 -0.14 0.58 16 17 C -0.52 -14.36 9.11 -34.44 -0.31 -14.68 16 18 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 19 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 20 N -0.89 -26.55 13.29 55.43 0.74 -25.81 16 21 Si 0.90 21.20 29.54 -169.99 -5.02 16.18 16 22 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 25 C 0.13 1.56 6.46 -3.60 -0.02 1.53 16 26 C 0.04 0.38 5.62 -3.70 -0.02 0.36 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.09 0.72 7.59 -51.93 -0.39 0.32 16 31 H 0.06 0.23 8.14 -51.93 -0.42 -0.20 16 32 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 33 H 0.06 0.18 8.14 -51.93 -0.42 -0.25 16 34 H 0.40 1.32 8.60 -40.82 -0.35 0.97 16 35 H 0.10 0.56 7.97 -51.93 -0.41 0.14 16 36 H 0.06 0.42 8.12 -51.93 -0.42 -0.01 16 37 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.10 1.25 5.76 -51.93 -0.30 0.95 16 39 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.09 1.25 7.19 -51.93 -0.37 0.88 16 41 H 0.12 2.02 8.14 -51.92 -0.42 1.60 16 42 H 0.12 2.06 8.14 -51.92 -0.42 1.64 16 43 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 45 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 46 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 47 H 0.10 1.12 7.19 -51.93 -0.37 0.75 16 48 H 0.09 0.62 7.99 -51.93 -0.41 0.21 16 49 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 404.72 15.07 6.10 6.10 Total: -1.00 -37.17 404.72 -10.83 -48.00 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -8.50 Total: -1.13 kcal Atomic # 6 Polarization: -15.18 SS G_CDS: -0.03 Total: -15.21 kcal Atomic # 7 Polarization: -51.03 SS G_CDS: -0.94 Total: -51.97 kcal Atomic # 8 Polarization: -47.55 SS G_CDS: -1.85 Total: -49.41 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: 48.03 SS G_CDS: -0.58 Total: 47.45 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -37.17 -10.83 -48.00 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111325698.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.674 kcal (2) G-P(sol) polarization free energy of solvation -37.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds