Wall clock time and date at job start Wed Apr 1 2020 04:11:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47197 * 2 1 4 4 N 1.46506 * 109.47182 * 120.00044 * 2 1 3 5 5 C 1.34773 * 119.99969 * 84.72073 * 4 2 1 6 6 O 1.21281 * 120.00220 * 0.02562 * 5 4 2 7 7 C 1.50706 * 120.00080 * 180.02562 * 5 4 2 8 8 N 1.46889 * 109.47109 * 180.02562 * 7 5 4 9 9 C 1.46905 * 110.99928 * 294.29930 * 8 7 5 10 10 C 1.53241 * 109.33809 * 172.74808 * 9 8 7 11 11 N 1.47086 * 108.51937 * 53.83507 * 10 9 8 12 12 S 1.65603 * 120.88199 * 128.83704 * 11 10 9 13 13 O 1.42098 * 104.27462 * 26.04578 * 12 11 10 14 14 O 1.42100 * 104.27610 * 153.90063 * 12 11 10 15 15 C 1.81396 * 104.44617 * 269.97298 * 12 11 10 16 16 C 1.52999 * 109.46872 * 180.02562 * 15 12 11 17 17 C 1.50699 * 109.47329 * 179.97438 * 16 15 12 18 18 H 1.08000 * 119.99772 * 0.02562 * 17 16 15 19 19 C 1.37877 * 120.00558 * 179.97438 * 17 16 15 20 20 N 1.31519 * 119.99694 * 0.02562 * 19 17 16 21 21 Si 1.86789 * 120.00314 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47387 * 0.02562 * 21 19 17 23 23 H 1.48498 * 109.47328 * 120.00129 * 21 19 17 24 24 H 1.48509 * 109.47285 * 240.00179 * 21 19 17 25 25 C 1.47079 * 118.23440 * 308.80912 * 11 10 9 26 26 C 1.46904 * 110.99974 * 170.00183 * 8 7 5 27 27 H 1.09007 * 109.47360 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47379 * 300.00069 * 1 2 3 29 29 H 1.09002 * 109.47097 * 60.00557 * 1 2 3 30 30 H 1.09005 * 109.47189 * 239.99632 * 2 1 3 31 31 H 1.09005 * 109.47224 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.47121 * 299.99952 * 3 2 1 33 33 H 1.08997 * 109.47013 * 59.99707 * 3 2 1 34 34 H 0.97005 * 119.99811 * 265.00126 * 4 2 1 35 35 H 1.09004 * 109.46762 * 300.00389 * 7 5 4 36 36 H 1.08998 * 109.46924 * 59.99727 * 7 5 4 37 37 H 1.08997 * 109.49012 * 292.70693 * 9 8 7 38 38 H 1.08996 * 109.49247 * 52.79249 * 9 8 7 39 39 H 1.08997 * 109.63227 * 294.11912 * 10 9 8 40 40 H 1.09003 * 109.62558 * 173.53938 * 10 9 8 41 41 H 1.08998 * 109.47626 * 299.99903 * 15 12 11 42 42 H 1.09005 * 109.47127 * 60.00202 * 15 12 11 43 43 H 1.09003 * 109.47143 * 299.99896 * 16 15 12 44 44 H 1.08999 * 109.47505 * 60.00265 * 16 15 12 45 45 H 0.96992 * 120.00111 * 179.97438 * 20 19 17 46 46 H 1.09006 * 109.63047 * 291.47633 * 25 11 10 47 47 H 1.09005 * 109.62284 * 170.89994 * 25 11 10 48 48 H 1.09001 * 109.48876 * 307.21059 * 26 8 7 49 49 H 1.09003 * 109.49296 * 67.28810 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1417 -2.0327 1.1963 6 8 1.8489 -2.6687 0.2060 7 6 2.6435 -2.7432 2.4270 8 7 2.6873 -4.1895 2.1737 9 6 1.3359 -4.7304 1.9758 10 6 1.4348 -6.1954 1.5375 11 7 2.2580 -6.9214 2.5167 12 16 1.7195 -8.3293 3.2024 13 8 0.8128 -8.8605 2.2459 14 8 2.9078 -9.0261 3.5514 15 6 0.8329 -7.7966 4.6926 16 6 0.2814 -9.0225 5.4234 17 6 -0.4546 -8.5801 6.6618 18 1 -0.5226 -7.5296 6.9032 19 6 -1.0421 -9.5163 7.4861 20 7 -0.9597 -10.7955 7.1919 21 14 -1.9550 -8.9678 9.0207 22 1 -1.9037 -7.4874 9.1247 23 1 -3.3705 -9.4090 8.9388 24 1 -1.3170 -9.5711 10.2184 25 6 3.5724 -6.3640 2.8701 26 6 3.3893 -4.8924 3.2559 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9563 0.8899 34 1 2.2490 -0.1823 1.9895 35 1 3.6446 -2.3867 2.6695 36 1 1.9733 -2.5403 3.2623 37 1 0.7783 -4.6671 2.9103 38 1 0.8227 -4.1543 1.2058 39 1 1.9004 -6.2527 0.5536 40 1 0.4379 -6.6346 1.5001 41 1 1.5168 -7.2595 5.3498 42 1 0.0095 -7.1404 4.4105 43 1 -0.4024 -9.5600 4.7665 44 1 1.1050 -9.6783 5.7056 45 1 -1.3726 -11.4541 7.7719 46 1 4.2435 -6.4375 2.0143 47 1 3.9887 -6.9147 3.7137 48 1 4.3654 -4.4337 3.4143 49 1 2.8031 -4.8268 4.1726 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000111325698.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:11:53 Heat of formation + Delta-G solvation = -133.562026 kcal Electronic energy + Delta-G solvation = -29347.655340 eV Core-core repulsion = 25242.627732 eV Total energy + Delta-G solvation = -4105.027607 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.05371 -39.49872 -38.23893 -37.05145 -36.90517 -35.91195 -35.44096 -33.13726 -32.62314 -32.10490 -29.36921 -28.07589 -27.61222 -25.78017 -24.79353 -23.62538 -22.34796 -21.47603 -21.35318 -19.82884 -19.13288 -18.37224 -18.07601 -17.27806 -17.18484 -17.10725 -16.55364 -16.48824 -15.92105 -15.79064 -15.71202 -15.57391 -15.09943 -15.01180 -14.83477 -14.48906 -14.19841 -13.87807 -13.74788 -13.52929 -13.39921 -13.22243 -13.12709 -13.06260 -12.96451 -12.89317 -12.84431 -12.79623 -12.29432 -12.27512 -12.24880 -12.13959 -12.11311 -11.92867 -11.87649 -11.67692 -11.15947 -10.71076 -10.66728 -10.06854 -9.99199 -9.23049 -8.26906 -6.41145 -0.73182 1.39949 1.40899 1.53956 1.70104 1.73882 2.14647 2.37058 2.85359 2.98698 3.06330 3.14750 3.60204 3.81312 4.00394 4.01995 4.02699 4.13879 4.15589 4.19644 4.29085 4.34933 4.35731 4.44490 4.52945 4.54709 4.72467 4.75292 4.77238 4.78472 4.85923 4.94056 4.95732 5.03101 5.07251 5.12192 5.25507 5.25936 5.29081 5.34293 5.59229 5.64658 5.67142 5.96842 6.04795 6.05668 6.68787 6.72533 7.28970 7.39670 8.85585 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.013072 B = 0.002478 C = 0.002230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2141.387165 B =11297.177505 C =12555.619774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.135 3.865 3 C -0.152 4.152 4 N -0.718 5.718 5 C 0.509 3.491 6 O -0.566 6.566 7 C 0.037 3.963 8 N -0.534 5.534 9 C 0.044 3.956 10 C 0.128 3.872 11 N -0.999 5.999 12 S 2.613 3.387 13 O -0.996 6.996 14 O -0.990 6.990 15 C -0.583 4.583 16 C 0.021 3.979 17 C -0.536 4.536 18 H 0.076 0.924 19 C -0.006 4.006 20 N -0.934 5.934 21 Si 0.976 3.024 22 H -0.255 1.255 23 H -0.279 1.279 24 H -0.277 1.277 25 C 0.118 3.882 26 C 0.045 3.955 27 H 0.033 0.967 28 H 0.067 0.933 29 H 0.074 0.926 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.415 0.585 35 H 0.135 0.865 36 H 0.083 0.917 37 H 0.043 0.957 38 H 0.093 0.907 39 H 0.074 0.926 40 H 0.087 0.913 41 H 0.142 0.858 42 H 0.136 0.864 43 H 0.004 0.996 44 H 0.007 0.993 45 H 0.267 0.733 46 H 0.081 0.919 47 H 0.097 0.903 48 H 0.119 0.881 49 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.916 29.015 -9.796 31.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.030 3.970 3 C -0.209 4.209 4 N -0.372 5.372 5 C 0.296 3.704 6 O -0.444 6.444 7 C -0.093 4.093 8 N -0.259 5.259 9 C -0.086 4.086 10 C 0.003 3.997 11 N -0.838 5.838 12 S 2.711 3.289 13 O -0.987 6.987 14 O -0.981 6.981 15 C -0.715 4.715 16 C -0.018 4.018 17 C -0.575 4.575 18 H 0.094 0.906 19 C -0.205 4.205 20 N -0.574 5.574 21 Si 0.799 3.201 22 H -0.178 1.178 23 H -0.205 1.205 24 H -0.203 1.203 25 C -0.007 4.007 26 C -0.084 4.084 27 H 0.052 0.948 28 H 0.086 0.914 29 H 0.093 0.907 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.097 0.903 33 H 0.093 0.907 34 H 0.252 0.748 35 H 0.152 0.848 36 H 0.101 0.899 37 H 0.061 0.939 38 H 0.111 0.889 39 H 0.092 0.908 40 H 0.105 0.895 41 H 0.160 0.840 42 H 0.155 0.845 43 H 0.022 0.978 44 H 0.025 0.975 45 H 0.076 0.924 46 H 0.099 0.901 47 H 0.116 0.884 48 H 0.137 0.863 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 9.107 27.448 -11.281 31.042 hybrid contribution -1.227 0.194 1.915 2.282 sum 7.881 27.643 -9.367 30.232 Atomic orbital electron populations 1.22154 0.95429 1.01210 1.03094 1.20931 0.94023 0.93988 0.88053 1.22013 1.01808 0.93140 1.03973 1.46046 1.67335 1.06361 1.17457 1.20992 0.76929 0.82689 0.89811 1.90685 1.50561 1.66597 1.36539 1.22076 1.04879 0.87964 0.94406 1.61481 1.17917 1.02288 1.44217 1.22537 0.90046 0.94901 1.01080 1.21504 0.94959 0.91312 0.91946 1.57712 1.27239 1.43435 1.55384 1.04784 0.73967 0.73883 0.76262 1.93486 1.67533 1.77757 1.59884 1.93487 1.47065 1.71784 1.85737 1.30364 1.13782 1.09268 1.18096 1.18822 0.95796 0.91131 0.96053 1.21515 1.34233 0.94147 1.07582 0.90622 1.26152 0.97303 0.94878 1.02125 1.70114 1.45580 1.01867 1.39845 0.85240 0.77779 0.79173 0.77894 1.17815 1.20488 1.20287 1.21726 0.82855 0.94011 1.02077 1.22596 1.00833 0.93267 0.91730 0.94762 0.91377 0.90747 0.91947 0.91686 0.90318 0.90652 0.74844 0.84761 0.89878 0.93911 0.88863 0.90797 0.89497 0.83958 0.84541 0.97787 0.97461 0.92397 0.90117 0.88442 0.86325 0.93152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.90 9.48 71.98 0.68 -1.22 16 2 C 0.13 1.50 3.18 44.99 0.14 1.64 16 3 C -0.15 -0.76 9.38 71.98 0.68 -0.09 16 4 N -0.72 -7.26 5.08 -442.52 -2.25 -9.51 16 5 C 0.51 8.44 7.45 87.66 0.65 9.09 16 6 O -0.57 -14.84 14.00 -3.03 -0.04 -14.88 16 7 C 0.04 0.44 5.45 85.56 0.47 0.91 16 8 N -0.53 -9.88 4.37 -899.82 -3.93 -13.82 16 9 C 0.04 0.97 5.26 86.38 0.45 1.43 16 10 C 0.13 3.40 6.47 86.35 0.56 3.96 16 11 N -1.00 -28.12 3.26 -512.14 -1.67 -29.79 16 12 S 2.61 97.91 5.42 -56.49 -0.31 97.61 16 13 O -1.00 -43.88 16.79 -127.65 -2.14 -46.02 16 14 O -0.99 -42.14 16.79 -127.65 -2.14 -44.28 16 15 C -0.58 -22.28 6.12 71.98 0.44 -21.84 16 16 C 0.02 1.10 4.98 29.85 0.15 1.25 16 17 C -0.54 -29.66 9.11 25.60 0.23 -29.42 16 18 H 0.08 3.85 7.74 -2.91 -0.02 3.83 16 19 C -0.01 -0.36 5.46 84.65 0.46 0.10 16 20 N -0.93 -57.11 13.29 21.45 0.28 -56.82 16 21 Si 0.98 43.12 29.54 68.60 2.03 45.15 16 22 H -0.25 -10.41 7.11 99.48 0.71 -9.70 16 23 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 24 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 25 C 0.12 2.62 6.46 86.35 0.56 3.18 16 26 C 0.04 0.71 5.62 86.38 0.49 1.19 16 27 H 0.03 0.60 8.14 -2.38 -0.02 0.58 16 28 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.06 1.03 7.59 -2.38 -0.02 1.02 16 31 H 0.06 0.32 8.14 -2.38 -0.02 0.30 16 32 H 0.08 0.33 8.14 -2.39 -0.02 0.31 16 33 H 0.07 0.19 8.14 -2.39 -0.02 0.17 16 34 H 0.41 1.42 8.60 -92.70 -0.80 0.63 16 35 H 0.13 0.81 7.97 -2.39 -0.02 0.79 16 36 H 0.08 0.73 8.12 -2.39 -0.02 0.71 16 37 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.09 2.28 5.76 -2.39 -0.01 2.27 16 39 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 40 H 0.09 2.39 7.19 -2.39 -0.02 2.37 16 41 H 0.14 4.66 8.14 -2.39 -0.02 4.64 16 42 H 0.14 4.64 8.14 -2.39 -0.02 4.63 16 43 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 44 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 45 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 46 H 0.08 1.74 8.14 -2.38 -0.02 1.72 16 47 H 0.10 2.13 7.19 -2.38 -0.02 2.11 16 48 H 0.12 1.17 7.99 -2.39 -0.02 1.15 16 49 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 Total: -1.00 -83.33 404.72 -4.08 -87.41 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: 0.13 Total: 14.78 kcal Atomic # 6 Polarization: -35.78 SS G_CDS: 5.96 Total: -29.82 kcal Atomic # 7 Polarization: -102.37 SS G_CDS: -7.57 Total: -109.94 kcal Atomic # 8 Polarization: -100.86 SS G_CDS: -4.33 Total: -105.19 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Atomic # 16 Polarization: 97.91 SS G_CDS: -0.31 Total: 97.61 kcal Total: -83.33 -4.08 -87.41 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111325698.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.155 kcal (2) G-P(sol) polarization free energy of solvation -83.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds