Wall clock time and date at job start Wed Apr 1 2020 05:17:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 109.47211 * 2 1 4 4 C 1.50702 * 109.46958 * 240.00541 * 2 1 3 5 5 O 1.21289 * 119.99695 * 269.19231 * 4 2 1 6 6 N 1.34773 * 120.00250 * 89.19601 * 4 2 1 7 7 C 1.46497 * 120.00133 * 5.31393 * 6 4 2 8 8 C 1.46498 * 119.99908 * 185.31339 * 6 4 2 9 9 C 1.50706 * 109.47224 * 89.99962 * 8 6 4 10 10 H 1.08004 * 119.99648 * 0.02562 * 9 8 6 11 11 C 1.37871 * 120.00219 * 180.02562 * 9 8 6 12 12 N 1.31516 * 120.00096 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 120.00010 * 180.02562 * 11 9 8 14 14 H 1.48495 * 109.47328 * 59.99908 * 13 11 9 15 15 H 1.48501 * 109.47372 * 179.97438 * 13 11 9 16 16 H 1.48499 * 109.47234 * 300.00010 * 13 11 9 17 17 N 1.46894 * 109.47195 * 119.99941 * 2 1 3 18 18 C 1.46895 * 111.00011 * 178.11737 * 17 2 1 19 19 C 1.53244 * 109.34217 * 187.25522 * 18 17 2 20 20 N 1.47075 * 108.52190 * 306.17362 * 19 18 17 21 21 S 1.65602 * 120.88227 * 231.20804 * 20 19 18 22 22 C 1.81401 * 104.44851 * 258.35854 * 21 20 19 23 23 O 1.42094 * 104.27530 * 14.42902 * 21 20 19 24 24 O 1.42102 * 104.27936 * 142.29352 * 21 20 19 25 25 C 1.47080 * 118.23664 * 51.18195 * 20 19 18 26 26 H 1.09002 * 109.78924 * 68.62174 * 25 20 19 27 27 C 1.53009 * 109.62853 * 189.10775 * 25 20 19 28 28 C 1.46893 * 111.00481 * 302.42349 * 17 2 1 29 29 H 1.09001 * 109.46708 * 186.86381 * 1 2 3 30 30 H 1.08998 * 109.47136 * 306.86691 * 1 2 3 31 31 H 1.08995 * 109.46951 * 66.86736 * 1 2 3 32 32 H 1.09001 * 109.47377 * 91.98491 * 7 6 4 33 33 H 1.08998 * 109.47154 * 211.98471 * 7 6 4 34 34 H 1.09003 * 109.46812 * 331.98580 * 7 6 4 35 35 H 1.08996 * 109.47504 * 209.99562 * 8 6 4 36 36 H 1.08997 * 109.47435 * 330.00427 * 8 6 4 37 37 H 0.96997 * 119.99872 * 180.02562 * 12 11 9 38 38 H 1.08999 * 109.49898 * 307.21727 * 18 17 2 39 39 H 1.09004 * 109.49419 * 67.29876 * 18 17 2 40 40 H 1.08998 * 109.62829 * 186.46104 * 19 18 17 41 41 H 1.09001 * 109.62554 * 65.88143 * 19 18 17 42 42 H 1.09007 * 109.47134 * 59.99670 * 22 21 20 43 43 H 1.08996 * 109.47312 * 179.97438 * 22 21 20 44 44 H 1.09001 * 109.47092 * 300.00472 * 22 21 20 45 45 H 1.09000 * 109.46755 * 191.70633 * 27 25 20 46 46 H 1.08999 * 109.46966 * 311.70141 * 27 25 20 47 47 H 1.09002 * 109.47070 * 71.70306 * 27 25 20 48 48 H 1.09001 * 109.49127 * 292.70796 * 28 17 2 49 49 H 1.09008 * 109.49340 * 52.75466 * 28 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2306 5 8 2.2484 -1.9033 -1.1964 6 7 2.2415 -0.0199 -2.3690 7 6 2.0930 1.4374 -2.3797 8 6 2.6175 -0.7269 -3.5958 9 6 1.3738 -1.1118 -4.3550 10 1 0.4007 -0.8549 -3.9630 11 6 1.4782 -1.7916 -5.5499 12 7 2.6631 -2.1039 -6.0274 13 14 -0.0633 -2.2680 -6.4913 14 1 -0.8281 -1.0440 -6.8406 15 1 0.3176 -2.9847 -7.7348 16 1 -0.9051 -3.1534 -5.6471 17 7 2.0197 -0.6924 1.1994 18 6 3.4874 -0.7512 1.2110 19 6 3.9509 -1.6328 2.3756 20 7 3.3388 -1.1298 3.6147 21 16 4.2631 -0.8141 4.9521 22 6 3.9938 -2.2435 6.0361 23 8 5.5968 -0.8043 4.4619 24 8 3.6801 0.3540 5.5133 25 6 1.8841 -0.9140 3.6345 26 1 1.3681 -1.8729 3.5851 27 6 1.4901 -0.1840 4.9202 28 6 1.5020 -0.0607 2.4203 29 1 -0.3633 -1.0203 0.1228 30 1 -0.3633 0.6165 0.8221 31 1 -0.3633 0.4037 -0.9450 32 1 3.0568 1.9024 -2.1722 33 1 1.7376 1.7592 -3.3585 34 1 1.3742 1.7350 -1.6162 35 1 3.2346 -0.0765 -4.2155 36 1 3.1793 -1.6252 -3.3399 37 1 2.7366 -2.5819 -6.8682 38 1 3.8421 -1.1742 0.2711 39 1 3.8908 0.2541 1.3330 40 1 5.0368 -1.5880 2.4592 41 1 3.6363 -2.6621 2.2034 42 1 4.3135 -3.1520 5.5256 43 1 4.5718 -2.1191 6.9517 44 1 2.9345 -2.3186 6.2819 45 1 0.4064 -0.2084 5.0343 46 1 1.9565 -0.6750 5.7742 47 1 1.8268 0.8514 4.8678 48 1 1.9329 0.9350 2.5254 49 1 0.4166 0.0175 2.3572 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000245604173.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:17:20 Heat of formation + Delta-G solvation = -95.448019 kcal Electronic energy + Delta-G solvation = -30630.369125 eV Core-core repulsion = 26526.994265 eV Total energy + Delta-G solvation = -4103.374860 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.29974 -39.68312 -38.39143 -37.04390 -36.62330 -36.20771 -34.69891 -33.53613 -31.92851 -30.32986 -29.78297 -28.31929 -27.45949 -26.99629 -25.37035 -23.62713 -23.13397 -21.75527 -19.80621 -19.75209 -18.67268 -18.37140 -18.00117 -17.47660 -17.27939 -17.22479 -16.61000 -16.38716 -16.04701 -15.67592 -15.56969 -15.32040 -15.03889 -14.46812 -14.27519 -14.18424 -14.04406 -13.91277 -13.89863 -13.56075 -13.47761 -13.34445 -13.27709 -13.20410 -13.07307 -12.91586 -12.78967 -12.60560 -12.55030 -12.50157 -12.27481 -12.18881 -12.09387 -11.97085 -11.79930 -11.71005 -11.27645 -10.63572 -10.46447 -10.04638 -9.41117 -9.24117 -8.21435 -6.36818 -0.70347 1.37617 1.41927 1.49225 1.60305 1.82827 2.22117 2.41942 2.85528 2.95610 3.08035 3.19595 3.47246 3.61891 3.91098 4.00111 4.04739 4.05695 4.14647 4.18848 4.28638 4.31656 4.37754 4.40877 4.56978 4.65220 4.67348 4.69852 4.76683 4.82505 4.85533 4.90693 4.93069 4.96095 5.01432 5.08950 5.16500 5.23563 5.28002 5.55873 5.56863 5.61022 5.82224 5.93064 6.06521 6.09523 6.71151 6.80395 7.29369 7.51540 8.85557 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.022955 B = 0.002571 C = 0.002495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.487609 B =10886.852846 C =11219.857744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.074 3.926 3 H 0.077 0.923 4 C 0.504 3.496 5 O -0.575 6.575 6 N -0.613 5.613 7 C 0.077 3.923 8 C 0.262 3.738 9 C -0.542 4.542 10 H 0.056 0.944 11 C 0.006 3.994 12 N -0.930 5.930 13 Si 0.969 3.031 14 H -0.260 1.260 15 H -0.280 1.280 16 H -0.276 1.276 17 N -0.525 5.525 18 C 0.044 3.956 19 C 0.132 3.868 20 N -1.000 6.000 21 S 2.607 3.393 22 C -0.653 4.653 23 O -1.002 7.002 24 O -0.977 6.977 25 C 0.155 3.845 26 H 0.097 0.903 27 C -0.172 4.172 28 C 0.043 3.957 29 H 0.057 0.943 30 H 0.102 0.898 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.069 0.931 34 H 0.093 0.907 35 H 0.019 0.981 36 H -0.003 1.003 37 H 0.267 0.733 38 H 0.061 0.939 39 H 0.034 0.966 40 H 0.099 0.901 41 H 0.080 0.920 42 H 0.142 0.858 43 H 0.146 0.854 44 H 0.152 0.848 45 H 0.095 0.905 46 H 0.068 0.932 47 H 0.075 0.925 48 H 0.040 0.960 49 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.437 5.463 26.385 27.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.037 4.037 3 H 0.095 0.905 4 C 0.292 3.708 5 O -0.455 6.455 6 N -0.345 5.345 7 C -0.066 4.066 8 C 0.140 3.860 9 C -0.581 4.581 10 H 0.074 0.926 11 C -0.192 4.192 12 N -0.570 5.570 13 Si 0.793 3.207 14 H -0.184 1.184 15 H -0.205 1.205 16 H -0.201 1.201 17 N -0.251 5.251 18 C -0.086 4.086 19 C 0.006 3.994 20 N -0.838 5.838 21 S 2.706 3.294 22 C -0.806 4.806 23 O -0.993 6.993 24 O -0.967 6.967 25 C 0.049 3.951 26 H 0.115 0.885 27 C -0.230 4.230 28 C -0.085 4.085 29 H 0.076 0.924 30 H 0.121 0.879 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.112 0.888 35 H 0.037 0.963 36 H 0.015 0.985 37 H 0.076 0.924 38 H 0.079 0.921 39 H 0.052 0.948 40 H 0.117 0.883 41 H 0.099 0.901 42 H 0.161 0.839 43 H 0.164 0.836 44 H 0.170 0.830 45 H 0.114 0.886 46 H 0.087 0.913 47 H 0.094 0.906 48 H 0.058 0.942 49 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -2.839 5.084 26.348 26.983 hybrid contribution -0.045 -0.272 -1.172 1.204 sum -2.884 4.812 25.176 25.793 Atomic orbital electron populations 1.21774 0.90230 1.03449 1.03642 1.21649 0.98550 0.95841 0.87706 0.90505 1.21050 0.77440 0.87380 0.84979 1.90625 1.52624 1.17272 1.84930 1.48192 1.67644 1.08704 1.10007 1.21941 1.02134 0.78550 1.03926 1.18711 0.95009 0.91294 0.80970 1.21675 0.93305 1.37223 1.05863 0.92584 1.25887 0.99646 0.95311 0.98394 1.70056 1.24872 1.40798 1.21243 0.85452 0.78934 0.78848 0.77497 1.18405 1.20511 1.20095 1.61590 1.08609 1.53686 1.01228 1.22376 0.88072 0.98797 0.99353 1.21392 0.98222 0.97917 0.81820 1.57766 1.17847 1.82345 1.25830 1.04806 0.72188 0.77699 0.74705 1.30422 1.13991 1.19843 1.16369 1.93526 1.38069 1.88336 1.79368 1.93663 1.77119 1.46590 1.79343 1.21271 0.78617 0.99916 0.95256 0.88511 1.22591 1.03947 1.02362 0.94106 1.22741 1.02096 0.95605 0.88063 0.92375 0.87895 0.91775 0.91922 0.91243 0.88834 0.96282 0.98453 0.92423 0.92060 0.94761 0.88287 0.90129 0.83938 0.83568 0.83020 0.88623 0.91336 0.90604 0.94206 0.86969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.19 8.47 71.98 0.61 -2.58 16 2 C 0.07 2.15 1.66 44.17 0.07 2.22 16 3 H 0.08 1.90 6.40 -2.38 -0.02 1.89 16 4 C 0.50 21.08 5.66 87.66 0.50 21.58 16 5 O -0.58 -29.82 15.13 -3.06 -0.05 -29.87 16 6 N -0.61 -26.40 2.86 -851.14 -2.43 -28.83 16 7 C 0.08 2.36 10.03 127.77 1.28 3.64 16 8 C 0.26 14.33 5.21 85.64 0.45 14.78 16 9 C -0.54 -31.28 9.39 25.60 0.24 -31.04 16 10 H 0.06 3.16 7.81 -2.91 -0.02 3.14 16 11 C 0.01 0.37 5.46 84.65 0.46 0.84 16 12 N -0.93 -56.77 13.29 21.45 0.28 -56.48 16 13 Si 0.97 44.77 29.54 68.60 2.03 46.79 16 14 H -0.26 -11.20 7.11 99.48 0.71 -10.50 16 15 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 16 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 17 N -0.53 -14.32 4.23 -874.41 -3.70 -18.02 16 18 C 0.04 1.27 5.30 86.39 0.46 1.73 16 19 C 0.13 3.12 6.66 86.35 0.57 3.70 16 20 N -1.00 -18.54 3.25 -489.89 -1.59 -20.14 16 21 S 2.61 44.32 5.50 -56.49 -0.31 44.01 16 22 C -0.65 -4.57 10.74 113.37 1.22 -3.35 16 23 O -1.00 -25.43 16.34 -127.65 -2.09 -27.52 16 24 O -0.98 -20.44 13.51 -127.65 -1.72 -22.16 16 25 C 0.16 2.46 3.67 44.96 0.17 2.62 16 26 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 27 C -0.17 -2.11 7.64 71.99 0.55 -1.56 16 28 C 0.04 0.83 4.63 86.38 0.40 1.23 16 29 H 0.06 1.59 8.14 -2.39 -0.02 1.58 16 30 H 0.10 1.60 6.61 -2.39 -0.02 1.59 16 31 H 0.06 1.60 7.83 -2.39 -0.02 1.58 16 32 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.07 2.20 8.09 -2.39 -0.02 2.18 16 34 H 0.09 2.19 5.73 -2.39 -0.01 2.17 16 35 H 0.02 1.07 8.07 -2.39 -0.02 1.05 16 36 H 0.00 -0.17 7.36 -2.39 -0.02 -0.19 16 37 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 38 H 0.06 2.23 6.13 -2.39 -0.01 2.22 16 39 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.10 2.33 6.64 -2.39 -0.02 2.31 16 41 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 42 H 0.14 0.78 8.14 -2.39 -0.02 0.76 16 43 H 0.15 0.56 8.14 -2.39 -0.02 0.54 16 44 H 0.15 0.46 6.92 -2.39 -0.02 0.45 16 45 H 0.10 0.72 8.14 -2.39 -0.02 0.71 16 46 H 0.07 0.67 4.71 -2.39 -0.01 0.66 16 47 H 0.08 1.26 6.69 -2.39 -0.02 1.25 16 48 H 0.04 0.78 8.07 -2.39 -0.02 0.76 16 49 H 0.11 1.64 6.03 -2.38 -0.01 1.62 16 Total: -1.00 -84.48 386.01 -1.66 -86.15 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: 0.94 Total: 12.28 kcal Atomic # 6 Polarization: 6.82 SS G_CDS: 6.97 Total: 13.79 kcal Atomic # 7 Polarization: -116.03 SS G_CDS: -7.44 Total: -123.47 kcal Atomic # 8 Polarization: -75.69 SS G_CDS: -3.86 Total: -79.55 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.79 kcal Atomic # 16 Polarization: 44.32 SS G_CDS: -0.31 Total: 44.01 kcal Total: -84.48 -1.66 -86.15 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000245604173.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.302 kcal (2) G-P(sol) polarization free energy of solvation -84.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds