Wall clock time and date at job start Wed Apr 1 2020 05:45:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.46957 * 2 1 4 4 C 1.50704 * 109.47116 * 239.99668 * 2 1 3 5 5 O 1.21277 * 120.00094 * 270.56749 * 4 2 1 6 6 N 1.34771 * 119.99543 * 90.57400 * 4 2 1 7 7 C 1.46505 * 120.00359 * 354.75084 * 6 4 2 8 8 C 1.46499 * 119.99850 * 174.75145 * 6 4 2 9 9 C 1.50702 * 109.47081 * 89.99995 * 8 6 4 10 10 H 1.07999 * 119.99918 * 0.02562 * 9 8 6 11 11 C 1.37877 * 120.00196 * 180.02562 * 9 8 6 12 12 N 1.31513 * 120.00005 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 120.00116 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47530 * 59.99642 * 13 11 9 15 15 H 1.48497 * 109.47433 * 179.97438 * 13 11 9 16 16 H 1.48501 * 109.47305 * 299.99524 * 13 11 9 17 17 N 1.46908 * 109.47074 * 120.00029 * 2 1 3 18 18 C 1.46836 * 110.99888 * 177.83106 * 17 2 1 19 19 C 1.53040 * 109.52255 * 185.83766 * 18 17 2 20 20 C 1.53117 * 109.28037 * 300.81856 * 19 18 17 21 21 C 1.53123 * 109.15658 * 57.65361 * 20 19 18 22 22 H 1.08996 * 109.50592 * 62.29074 * 21 20 19 23 23 N 1.46505 * 109.49862 * 182.40911 * 21 20 19 24 24 S 1.65598 * 119.99600 * 264.79986 * 23 21 20 25 25 C 1.81401 * 104.44920 * 65.00332 * 24 23 21 26 26 O 1.42106 * 104.27498 * 181.07490 * 24 23 21 27 27 O 1.42101 * 104.27812 * 308.92989 * 24 23 21 28 28 C 1.46852 * 110.99709 * 302.03730 * 17 2 1 29 29 H 1.09005 * 109.46851 * 185.83283 * 1 2 3 30 30 H 1.08995 * 109.47406 * 305.83142 * 1 2 3 31 31 H 1.09004 * 109.47212 * 65.83833 * 1 2 3 32 32 H 1.09000 * 109.46618 * 94.50674 * 7 6 4 33 33 H 1.09001 * 109.46864 * 214.50833 * 7 6 4 34 34 H 1.08997 * 109.46874 * 334.50510 * 7 6 4 35 35 H 1.09001 * 109.47664 * 209.99495 * 8 6 4 36 36 H 1.09000 * 109.47253 * 330.00147 * 8 6 4 37 37 H 0.97003 * 120.00550 * 180.02562 * 12 11 9 38 38 H 1.09005 * 109.46728 * 305.84858 * 18 17 2 39 39 H 1.09003 * 109.46614 * 65.82131 * 18 17 2 40 40 H 1.08997 * 109.50244 * 60.76012 * 19 18 17 41 41 H 1.09008 * 109.50373 * 180.83566 * 19 18 17 42 42 H 1.08997 * 109.52658 * 177.55627 * 20 19 18 43 43 H 1.09000 * 109.52188 * 297.75222 * 20 19 18 44 44 H 0.96999 * 120.00249 * 84.80822 * 23 21 20 45 45 H 1.08996 * 109.46909 * 60.00209 * 25 24 23 46 46 H 1.09000 * 109.46844 * 179.97438 * 25 24 23 47 47 H 1.08993 * 109.46974 * 299.99577 * 25 24 23 48 48 H 1.08993 * 109.46363 * 294.18124 * 28 17 2 49 49 H 1.09000 * 109.46004 * 54.14663 * 28 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 8 2.2247 -1.9076 -1.2034 6 7 2.2679 -0.0154 -2.3608 7 6 1.9278 1.4079 -2.4300 8 6 2.8642 -0.6832 -3.5205 9 6 1.7716 -1.2452 -4.3932 10 1 0.7367 -1.1173 -4.1123 11 6 2.0933 -1.9226 -5.5502 12 7 3.3536 -2.0779 -5.8925 13 14 0.7391 -2.6198 -6.6315 14 1 -0.1418 -1.5175 -7.0944 15 1 1.3434 -3.2966 -7.8071 16 1 -0.0610 -3.5992 -5.8532 17 7 2.0197 -0.6925 1.1995 18 6 3.4866 -0.7572 1.2078 19 6 3.9543 -1.6079 2.3908 20 6 3.4450 -0.9856 3.6938 21 6 1.9180 -0.8851 3.6394 22 1 1.4902 -1.8845 3.5595 23 7 1.4268 -0.2379 4.8584 24 16 0.9207 -1.1588 6.1383 25 6 2.4171 -2.0185 6.6971 26 8 0.4994 -0.2094 7.1082 27 8 0.0012 -2.0788 5.5662 28 6 1.5094 -0.0553 2.4202 29 1 -0.3633 -1.0224 0.1044 30 1 -0.3634 0.6016 0.8331 31 1 -0.3634 0.4206 -0.9377 32 1 2.8058 2.0037 -2.1806 33 1 1.5965 1.6536 -3.4389 34 1 1.1281 1.6251 -1.7220 35 1 3.4516 0.0357 -4.0916 36 1 3.5105 -1.4926 -3.1811 37 1 3.5800 -2.5542 -6.7066 38 1 3.8357 -1.2056 0.2776 39 1 3.8940 0.2495 1.3008 40 1 3.5586 -2.6186 2.2912 41 1 5.0437 -1.6435 2.4053 42 1 3.7391 -1.6118 4.5360 43 1 3.8715 0.0104 3.8128 44 1 1.3979 0.7299 4.9158 45 1 3.1673 -1.2859 6.9945 46 1 2.1740 -2.6550 7.5480 47 1 2.8089 -2.6309 5.8851 48 1 1.9260 0.9481 2.5075 49 1 0.4222 0.0061 2.3705 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000249709048.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:45:34 Heat of formation + Delta-G solvation = -93.415941 kcal Electronic energy + Delta-G solvation = -30025.655964 eV Core-core repulsion = 25922.369221 eV Total energy + Delta-G solvation = -4103.286742 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.09972 -38.49562 -37.39696 -36.27610 -35.53673 -34.72397 -33.45178 -32.52915 -30.26680 -29.73474 -29.29111 -27.75514 -25.95421 -24.92009 -23.54188 -22.78520 -21.47844 -20.38779 -19.63430 -18.39820 -17.99589 -16.97104 -16.72702 -16.50500 -16.48102 -15.90359 -15.25897 -15.10521 -14.91369 -14.35232 -14.29265 -14.09610 -13.96724 -13.73098 -13.60235 -13.51538 -13.12108 -13.06289 -12.58704 -12.43527 -12.34258 -12.16616 -12.12564 -11.93992 -11.91246 -11.65392 -11.61954 -11.46086 -11.39214 -11.17843 -11.05813 -10.91636 -10.81001 -10.62595 -10.55381 -10.14405 -9.75846 -9.62912 -8.82425 -8.42491 -8.24555 -7.63589 -6.03555 -4.07929 -0.09283 2.30922 3.32694 3.34658 3.37469 3.41185 3.44578 3.62712 3.84626 4.11949 4.29984 4.41126 4.45612 4.52006 4.57403 4.73818 4.90142 4.98037 5.09646 5.17301 5.21685 5.24218 5.28796 5.31809 5.38007 5.45219 5.52274 5.58920 5.70161 5.74024 5.77645 5.83384 5.88560 5.90726 6.11077 6.16582 6.21069 6.35862 6.59567 6.89665 7.06769 7.11709 7.41632 7.54390 7.92859 8.23940 8.41701 8.91468 9.11956 9.57173 11.04513 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.022174 B = 0.002315 C = 0.002290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.418006 B =12093.427791 C =12223.015724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.067 3.933 3 H 0.056 0.944 4 C 0.509 3.491 5 O -0.517 6.517 6 N -0.605 5.605 7 C 0.081 3.919 8 C 0.248 3.752 9 C -0.524 4.524 10 H 0.057 0.943 11 C 0.061 3.939 12 N -0.896 5.896 13 Si 0.898 3.102 14 H -0.277 1.277 15 H -0.287 1.287 16 H -0.276 1.276 17 N -0.512 5.512 18 C 0.049 3.951 19 C -0.113 4.113 20 C -0.143 4.143 21 C 0.148 3.852 22 H 0.106 0.894 23 N -1.114 6.114 24 S 2.614 3.386 25 C -0.676 4.676 26 O -0.963 6.963 27 O -0.952 6.952 28 C 0.053 3.947 29 H 0.075 0.925 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.042 0.958 33 H 0.073 0.927 34 H 0.058 0.942 35 H 0.031 0.969 36 H 0.042 0.958 37 H 0.263 0.737 38 H 0.091 0.909 39 H 0.030 0.970 40 H 0.079 0.921 41 H 0.072 0.928 42 H 0.066 0.934 43 H 0.069 0.931 44 H 0.416 0.584 45 H 0.129 0.871 46 H 0.128 0.872 47 H 0.131 0.869 48 H 0.038 0.962 49 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.809 7.464 23.877 25.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.045 4.045 3 H 0.073 0.927 4 C 0.294 3.706 5 O -0.392 6.392 6 N -0.339 5.339 7 C -0.063 4.063 8 C 0.129 3.871 9 C -0.563 4.563 10 H 0.075 0.925 11 C -0.141 4.141 12 N -0.536 5.536 13 Si 0.726 3.274 14 H -0.203 1.203 15 H -0.212 1.212 16 H -0.201 1.201 17 N -0.238 5.238 18 C -0.078 4.078 19 C -0.151 4.151 20 C -0.183 4.183 21 C 0.041 3.959 22 H 0.124 0.876 23 N -0.872 5.872 24 S 2.706 3.294 25 C -0.825 4.825 26 O -0.953 6.953 27 O -0.942 6.942 28 C -0.077 4.077 29 H 0.094 0.906 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.061 0.939 33 H 0.092 0.908 34 H 0.077 0.923 35 H 0.049 0.951 36 H 0.060 0.940 37 H 0.073 0.927 38 H 0.109 0.891 39 H 0.048 0.952 40 H 0.097 0.903 41 H 0.091 0.909 42 H 0.085 0.915 43 H 0.088 0.912 44 H 0.251 0.749 45 H 0.148 0.852 46 H 0.147 0.853 47 H 0.150 0.850 48 H 0.056 0.944 49 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -0.009 6.000 24.040 24.777 hybrid contribution 0.399 0.856 -0.748 1.205 sum 0.391 6.856 23.292 24.283 Atomic orbital electron populations 1.21815 0.92291 1.03843 1.02069 1.21676 0.97278 0.95661 0.89886 0.92662 1.20017 0.79063 0.87725 0.83807 1.90684 1.50742 1.14018 1.83780 1.48192 1.61669 1.09480 1.14528 1.21673 0.99078 0.82596 1.02935 1.19254 0.93769 0.92912 0.81177 1.21383 0.93216 1.35487 1.06192 0.92520 1.24931 0.95616 0.95886 0.97685 1.69917 1.16489 1.42202 1.24953 0.86562 0.81881 0.79324 0.79673 1.20300 1.21219 1.20111 1.61557 1.09548 1.52646 1.00048 1.22210 0.86758 0.98297 1.00542 1.21521 1.00401 1.00534 0.92690 1.22278 0.95294 1.01917 0.98787 1.20872 0.93713 0.97880 0.83426 0.87620 1.55611 1.83290 1.19512 1.28803 1.04719 0.76355 0.74836 0.73513 1.30646 1.23415 1.15332 1.13137 1.93618 1.80394 1.60231 1.61077 1.93650 1.58369 1.65740 1.76397 1.22300 1.01504 0.95074 0.88784 0.90588 0.92013 0.91375 0.93943 0.90801 0.92343 0.95082 0.94046 0.92693 0.89106 0.95211 0.90267 0.90922 0.91534 0.91226 0.74939 0.85223 0.85339 0.85036 0.94381 0.89257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 8.44 37.16 0.31 -1.56 16 2 C 0.07 0.98 1.62 -68.86 -0.11 0.87 16 3 H 0.06 0.70 6.77 -51.93 -0.35 0.35 16 4 C 0.51 10.26 5.62 -10.99 -0.06 10.20 16 5 O -0.52 -12.77 15.27 5.56 0.08 -12.68 16 6 N -0.61 -12.52 2.86 -182.95 -0.52 -13.05 16 7 C 0.08 1.25 9.87 59.85 0.59 1.84 16 8 C 0.25 6.40 5.14 -5.19 -0.03 6.37 16 9 C -0.52 -14.79 9.39 -34.44 -0.32 -15.11 16 10 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 11 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 12 N -0.90 -26.54 13.29 55.43 0.74 -25.80 16 13 Si 0.90 21.92 29.54 -169.99 -5.02 16.90 16 14 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 15 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 16 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 17 N -0.51 -6.90 4.27 -228.08 -0.97 -7.88 16 18 C 0.05 0.64 5.14 -3.84 -0.02 0.62 16 19 C -0.11 -1.12 6.09 -26.65 -0.16 -1.28 16 20 C -0.14 -1.05 5.56 -26.61 -0.15 -1.20 16 21 C 0.15 1.26 2.85 -67.85 -0.19 1.07 16 22 H 0.11 1.03 7.48 -51.93 -0.39 0.64 16 23 N -1.11 -7.37 5.36 -4.82 -0.03 -7.40 16 24 S 2.61 19.73 6.08 -107.50 -0.65 19.08 16 25 C -0.68 -2.78 10.11 101.05 1.02 -1.76 16 26 O -0.96 -10.22 18.08 -57.54 -1.04 -11.26 16 27 O -0.95 -11.26 17.39 -57.54 -1.00 -12.26 16 28 C 0.05 0.53 4.71 -3.83 -0.02 0.51 16 29 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.06 0.63 6.58 -51.93 -0.34 0.29 16 31 H 0.07 0.90 7.22 -51.93 -0.37 0.52 16 32 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.07 1.18 8.11 -51.93 -0.42 0.76 16 34 H 0.06 0.74 5.40 -51.93 -0.28 0.46 16 35 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 36 H 0.04 1.20 7.50 -51.93 -0.39 0.81 16 37 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 38 H 0.09 1.50 6.18 -51.93 -0.32 1.18 16 39 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.07 0.63 8.14 -51.92 -0.42 0.20 16 42 H 0.07 0.35 5.86 -51.93 -0.30 0.04 16 43 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.42 2.08 8.80 -34.47 -0.30 1.78 16 45 H 0.13 0.33 8.14 -51.93 -0.42 -0.09 16 46 H 0.13 0.38 8.14 -51.92 -0.42 -0.04 16 47 H 0.13 0.47 6.75 -51.93 -0.35 0.12 16 48 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 49 H 0.09 0.89 6.08 -51.93 -0.32 0.58 16 LS Contribution 393.66 15.07 5.93 5.93 Total: -1.00 -38.22 393.66 -9.63 -47.85 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: -7.91 Total: -1.62 kcal Atomic # 6 Polarization: 1.44 SS G_CDS: 0.76 Total: 2.20 kcal Atomic # 7 Polarization: -53.34 SS G_CDS: -0.79 Total: -54.13 kcal Atomic # 8 Polarization: -34.25 SS G_CDS: -1.96 Total: -36.20 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Atomic # 16 Polarization: 19.73 SS G_CDS: -0.65 Total: 19.08 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -38.22 -9.63 -47.85 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000249709048.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.568 kcal (2) G-P(sol) polarization free energy of solvation -38.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds