Wall clock time and date at job start Wed Apr 1 2020 05:45:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.46957 * 2 1 4 4 C 1.50704 * 109.47116 * 239.99668 * 2 1 3 5 5 O 1.21277 * 120.00094 * 270.56749 * 4 2 1 6 6 N 1.34771 * 119.99543 * 90.57400 * 4 2 1 7 7 C 1.46505 * 120.00359 * 354.75084 * 6 4 2 8 8 C 1.46499 * 119.99850 * 174.75145 * 6 4 2 9 9 C 1.50702 * 109.47081 * 89.99995 * 8 6 4 10 10 H 1.07999 * 119.99918 * 0.02562 * 9 8 6 11 11 C 1.37877 * 120.00196 * 180.02562 * 9 8 6 12 12 N 1.31513 * 120.00005 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 120.00116 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47530 * 59.99642 * 13 11 9 15 15 H 1.48497 * 109.47433 * 179.97438 * 13 11 9 16 16 H 1.48501 * 109.47305 * 299.99524 * 13 11 9 17 17 N 1.46908 * 109.47074 * 120.00029 * 2 1 3 18 18 C 1.46836 * 110.99888 * 177.83106 * 17 2 1 19 19 C 1.53040 * 109.52255 * 185.83766 * 18 17 2 20 20 C 1.53117 * 109.28037 * 300.81856 * 19 18 17 21 21 C 1.53123 * 109.15658 * 57.65361 * 20 19 18 22 22 H 1.08996 * 109.50592 * 62.29074 * 21 20 19 23 23 N 1.46505 * 109.49862 * 182.40911 * 21 20 19 24 24 S 1.65598 * 119.99600 * 264.79986 * 23 21 20 25 25 C 1.81401 * 104.44920 * 65.00332 * 24 23 21 26 26 O 1.42106 * 104.27498 * 181.07490 * 24 23 21 27 27 O 1.42101 * 104.27812 * 308.92989 * 24 23 21 28 28 C 1.46852 * 110.99709 * 302.03730 * 17 2 1 29 29 H 1.09005 * 109.46851 * 185.83283 * 1 2 3 30 30 H 1.08995 * 109.47406 * 305.83142 * 1 2 3 31 31 H 1.09004 * 109.47212 * 65.83833 * 1 2 3 32 32 H 1.09000 * 109.46618 * 94.50674 * 7 6 4 33 33 H 1.09001 * 109.46864 * 214.50833 * 7 6 4 34 34 H 1.08997 * 109.46874 * 334.50510 * 7 6 4 35 35 H 1.09001 * 109.47664 * 209.99495 * 8 6 4 36 36 H 1.09000 * 109.47253 * 330.00147 * 8 6 4 37 37 H 0.97003 * 120.00550 * 180.02562 * 12 11 9 38 38 H 1.09005 * 109.46728 * 305.84858 * 18 17 2 39 39 H 1.09003 * 109.46614 * 65.82131 * 18 17 2 40 40 H 1.08997 * 109.50244 * 60.76012 * 19 18 17 41 41 H 1.09008 * 109.50373 * 180.83566 * 19 18 17 42 42 H 1.08997 * 109.52658 * 177.55627 * 20 19 18 43 43 H 1.09000 * 109.52188 * 297.75222 * 20 19 18 44 44 H 0.96999 * 120.00249 * 84.80822 * 23 21 20 45 45 H 1.08996 * 109.46909 * 60.00209 * 25 24 23 46 46 H 1.09000 * 109.46844 * 179.97438 * 25 24 23 47 47 H 1.08993 * 109.46974 * 299.99577 * 25 24 23 48 48 H 1.08993 * 109.46363 * 294.18124 * 28 17 2 49 49 H 1.09000 * 109.46004 * 54.14663 * 28 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 8 2.2247 -1.9076 -1.2034 6 7 2.2679 -0.0154 -2.3608 7 6 1.9278 1.4079 -2.4300 8 6 2.8642 -0.6832 -3.5205 9 6 1.7716 -1.2452 -4.3932 10 1 0.7367 -1.1173 -4.1123 11 6 2.0933 -1.9226 -5.5502 12 7 3.3536 -2.0779 -5.8925 13 14 0.7391 -2.6198 -6.6315 14 1 -0.1418 -1.5175 -7.0944 15 1 1.3434 -3.2966 -7.8071 16 1 -0.0610 -3.5992 -5.8532 17 7 2.0197 -0.6925 1.1995 18 6 3.4866 -0.7572 1.2078 19 6 3.9543 -1.6079 2.3908 20 6 3.4450 -0.9856 3.6938 21 6 1.9180 -0.8851 3.6394 22 1 1.4902 -1.8845 3.5595 23 7 1.4268 -0.2379 4.8584 24 16 0.9207 -1.1588 6.1383 25 6 2.4171 -2.0185 6.6971 26 8 0.4994 -0.2094 7.1082 27 8 0.0012 -2.0788 5.5662 28 6 1.5094 -0.0553 2.4202 29 1 -0.3633 -1.0224 0.1044 30 1 -0.3634 0.6016 0.8331 31 1 -0.3634 0.4206 -0.9377 32 1 2.8058 2.0037 -2.1806 33 1 1.5965 1.6536 -3.4389 34 1 1.1281 1.6251 -1.7220 35 1 3.4516 0.0357 -4.0916 36 1 3.5105 -1.4926 -3.1811 37 1 3.5800 -2.5542 -6.7066 38 1 3.8357 -1.2056 0.2776 39 1 3.8940 0.2495 1.3008 40 1 3.5586 -2.6186 2.2912 41 1 5.0437 -1.6435 2.4053 42 1 3.7391 -1.6118 4.5360 43 1 3.8715 0.0104 3.8128 44 1 1.3979 0.7299 4.9158 45 1 3.1673 -1.2859 6.9945 46 1 2.1740 -2.6550 7.5480 47 1 2.8089 -2.6309 5.8851 48 1 1.9260 0.9481 2.5075 49 1 0.4222 0.0061 2.3705 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000249709048.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:45:33 Heat of formation + Delta-G solvation = -125.808908 kcal Electronic energy + Delta-G solvation = -30027.060628 eV Core-core repulsion = 25922.369221 eV Total energy + Delta-G solvation = -4104.691407 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.31681 -39.67441 -38.12076 -36.99634 -36.66058 -36.27176 -34.78657 -34.14242 -31.24573 -30.25562 -30.04684 -29.56564 -27.40378 -26.11979 -25.05397 -23.73506 -22.78303 -21.09952 -20.33769 -19.81849 -18.67458 -18.65618 -18.00887 -17.85847 -17.20468 -16.96279 -16.67984 -16.36534 -15.84635 -15.73218 -15.53382 -15.07078 -14.86486 -14.68342 -14.41635 -14.17895 -14.07528 -13.98649 -13.90627 -13.68132 -13.45818 -13.28521 -13.16906 -13.10261 -13.06836 -12.90353 -12.82593 -12.65568 -12.59938 -12.44799 -12.33780 -12.18642 -12.12115 -11.75648 -11.74695 -11.65705 -11.40418 -10.64020 -10.41167 -10.34857 -9.39960 -9.23296 -8.21972 -6.36270 -0.64090 1.36024 1.40532 1.47557 1.70897 1.86049 2.25373 2.42276 2.89325 2.95872 3.07403 3.31693 3.62718 3.68808 3.87361 3.95461 4.07785 4.09698 4.13489 4.20732 4.24809 4.36146 4.38496 4.44529 4.54121 4.67552 4.68565 4.73871 4.79232 4.85007 4.92605 4.96046 4.96519 5.00331 5.02560 5.15734 5.21792 5.22964 5.31050 5.46750 5.56724 5.83242 5.97106 6.07257 6.11511 6.22261 6.71158 6.82183 7.29759 7.54007 8.84693 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.022174 B = 0.002315 C = 0.002290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.418006 B =12093.427791 C =12223.015724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.079 3.921 3 H 0.086 0.914 4 C 0.502 3.498 5 O -0.576 6.576 6 N -0.614 5.614 7 C 0.076 3.924 8 C 0.263 3.737 9 C -0.540 4.540 10 H 0.051 0.949 11 C 0.008 3.992 12 N -0.929 5.929 13 Si 0.965 3.035 14 H -0.260 1.260 15 H -0.278 1.278 16 H -0.280 1.280 17 N -0.534 5.534 18 C 0.050 3.950 19 C -0.111 4.111 20 C -0.136 4.136 21 C 0.151 3.849 22 H 0.088 0.912 23 N -1.104 6.104 24 S 2.620 3.380 25 C -0.657 4.657 26 O -0.997 6.997 27 O -1.004 7.004 28 C 0.050 3.950 29 H 0.049 0.951 30 H 0.099 0.901 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.093 0.907 35 H 0.024 0.976 36 H -0.005 1.005 37 H 0.267 0.733 38 H 0.042 0.958 39 H 0.048 0.952 40 H 0.058 0.942 41 H 0.086 0.914 42 H 0.094 0.906 43 H 0.089 0.911 44 H 0.426 0.574 45 H 0.156 0.844 46 H 0.145 0.855 47 H 0.143 0.857 48 H 0.063 0.937 49 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.644 9.335 25.924 27.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.032 4.032 3 H 0.103 0.897 4 C 0.290 3.710 5 O -0.455 6.455 6 N -0.346 5.346 7 C -0.066 4.066 8 C 0.142 3.858 9 C -0.579 4.579 10 H 0.069 0.931 11 C -0.191 4.191 12 N -0.568 5.568 13 Si 0.789 3.211 14 H -0.184 1.184 15 H -0.203 1.203 16 H -0.205 1.205 17 N -0.261 5.261 18 C -0.077 4.077 19 C -0.150 4.150 20 C -0.175 4.175 21 C 0.043 3.957 22 H 0.106 0.894 23 N -0.864 5.864 24 S 2.717 3.283 25 C -0.811 4.811 26 O -0.988 6.988 27 O -0.994 6.994 28 C -0.078 4.078 29 H 0.069 0.931 30 H 0.118 0.882 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.111 0.889 35 H 0.042 0.958 36 H 0.014 0.986 37 H 0.076 0.924 38 H 0.060 0.940 39 H 0.066 0.934 40 H 0.077 0.923 41 H 0.105 0.895 42 H 0.112 0.888 43 H 0.108 0.892 44 H 0.262 0.738 45 H 0.175 0.825 46 H 0.163 0.837 47 H 0.161 0.839 48 H 0.081 0.919 49 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -0.224 7.958 26.097 27.284 hybrid contribution 0.537 0.253 -1.345 1.471 sum 0.313 8.211 24.752 26.080 Atomic orbital electron populations 1.21832 0.91024 1.03068 1.03728 1.21581 0.97982 0.96070 0.87613 0.89673 1.21087 0.77585 0.87318 0.85023 1.90643 1.53083 1.16907 1.84857 1.48215 1.61372 1.11632 1.13385 1.21959 1.01452 0.79474 1.03705 1.18699 0.92862 0.91721 0.82565 1.21657 0.93356 1.35986 1.06873 0.93100 1.25837 0.98054 0.96086 0.99159 1.70034 1.18437 1.42820 1.25549 0.85507 0.78959 0.78818 0.77770 1.18429 1.20265 1.20522 1.61480 1.09953 1.53848 1.00817 1.22151 0.86680 0.99335 0.99559 1.21505 1.01207 0.99124 0.93125 1.22258 0.94006 1.03351 0.97882 1.20739 0.94659 0.96952 0.83383 0.89390 1.55294 1.83135 1.19976 1.27954 1.04259 0.77157 0.74064 0.72862 1.30467 1.20730 1.15779 1.14078 1.93572 1.81942 1.61459 1.61778 1.93589 1.61726 1.66757 1.77316 1.22408 1.01532 0.96304 0.87588 0.93141 0.88210 0.91283 0.91285 0.91562 0.88862 0.95837 0.98641 0.92415 0.93978 0.93395 0.92305 0.89543 0.88801 0.89242 0.73798 0.82535 0.83672 0.83867 0.91860 0.89305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.45 8.44 71.98 0.61 -2.84 16 2 C 0.08 2.23 1.62 44.17 0.07 2.30 16 3 H 0.09 1.89 6.77 -2.39 -0.02 1.88 16 4 C 0.50 20.89 5.62 87.66 0.49 21.39 16 5 O -0.58 -30.40 15.27 -3.02 -0.05 -30.44 16 6 N -0.61 -25.99 2.86 -851.13 -2.43 -28.42 16 7 C 0.08 2.24 9.87 127.77 1.26 3.50 16 8 C 0.26 14.28 5.14 85.63 0.44 14.72 16 9 C -0.54 -31.53 9.39 25.60 0.24 -31.29 16 10 H 0.05 2.95 7.81 -2.91 -0.02 2.93 16 11 C 0.01 0.44 5.46 84.65 0.46 0.90 16 12 N -0.93 -56.60 13.29 21.45 0.28 -56.31 16 13 Si 0.97 45.54 29.54 68.60 2.03 47.57 16 14 H -0.26 -11.46 7.11 99.48 0.71 -10.76 16 15 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 16 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 17 N -0.53 -14.02 4.27 -875.50 -3.74 -17.76 16 18 C 0.05 1.29 5.14 86.33 0.44 1.73 16 19 C -0.11 -2.09 6.09 30.65 0.19 -1.90 16 20 C -0.14 -1.54 5.56 30.67 0.17 -1.37 16 21 C 0.15 2.22 2.85 45.04 0.13 2.35 16 22 H 0.09 1.65 7.48 -2.39 -0.02 1.63 16 23 N -1.10 -11.83 5.36 -169.16 -0.91 -12.74 16 24 S 2.62 35.32 6.08 -56.49 -0.34 34.98 16 25 C -0.66 -2.94 10.11 113.37 1.15 -1.79 16 26 O -1.00 -19.90 18.08 -127.65 -2.31 -22.20 16 27 O -1.00 -23.62 17.39 -127.65 -2.22 -25.84 16 28 C 0.05 0.88 4.71 86.32 0.41 1.29 16 29 H 0.05 1.51 8.14 -2.38 -0.02 1.49 16 30 H 0.10 1.72 6.58 -2.39 -0.02 1.70 16 31 H 0.07 1.69 7.22 -2.39 -0.02 1.67 16 32 H 0.07 1.67 8.14 -2.39 -0.02 1.66 16 33 H 0.07 2.05 8.11 -2.39 -0.02 2.04 16 34 H 0.09 2.07 5.40 -2.39 -0.01 2.06 16 35 H 0.02 1.29 8.07 -2.39 -0.02 1.27 16 36 H 0.00 -0.28 7.50 -2.39 -0.02 -0.30 16 37 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 38 H 0.04 1.48 6.18 -2.38 -0.01 1.47 16 39 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.09 1.36 8.14 -2.38 -0.02 1.35 16 42 H 0.09 0.57 5.86 -2.39 -0.01 0.56 16 43 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 44 H 0.43 2.98 8.80 -96.75 -0.85 2.13 16 45 H 0.16 -0.02 8.14 -2.39 -0.02 -0.04 16 46 H 0.14 0.32 8.14 -2.39 -0.02 0.30 16 47 H 0.14 0.44 6.75 -2.39 -0.02 0.42 16 48 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 49 H 0.09 1.56 6.08 -2.39 -0.01 1.55 16 Total: -1.00 -89.82 393.66 -3.52 -93.34 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: 0.11 Total: 8.84 kcal Atomic # 6 Polarization: 2.93 SS G_CDS: 6.06 Total: 8.99 kcal Atomic # 7 Polarization: -108.44 SS G_CDS: -6.79 Total: -115.23 kcal Atomic # 8 Polarization: -73.91 SS G_CDS: -4.57 Total: -78.49 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.57 kcal Atomic # 16 Polarization: 35.32 SS G_CDS: -0.34 Total: 34.98 kcal Total: -89.82 -3.52 -93.34 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000249709048.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.469 kcal (2) G-P(sol) polarization free energy of solvation -89.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds