Wall clock time and date at job start Wed Apr 1 2020 05:39:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08993 * 109.47462 * 2 1 4 4 C 1.53004 * 109.47106 * 239.99432 * 2 1 3 5 5 N 1.46497 * 109.46901 * 185.00015 * 4 2 1 6 6 S 1.65608 * 119.99590 * 165.00529 * 5 4 2 7 7 O 1.42105 * 106.39936 * 311.45624 * 6 5 4 8 8 O 1.42103 * 106.39990 * 178.54185 * 6 5 4 9 9 N 1.65591 * 107.21947 * 65.00148 * 6 5 4 10 10 C 1.46506 * 120.00063 * 269.99815 * 9 6 5 11 11 C 1.46499 * 120.00485 * 90.00027 * 9 6 5 12 12 H 1.09007 * 109.46342 * 359.97438 * 11 9 6 13 13 C 1.52998 * 109.47185 * 119.99872 * 11 9 6 14 14 C 1.50701 * 109.47260 * 240.00359 * 11 9 6 15 15 H 1.08002 * 119.99761 * 359.97438 * 14 11 9 16 16 C 1.37871 * 119.99694 * 180.27562 * 14 11 9 17 17 N 1.31514 * 120.00482 * 359.71466 * 16 14 11 18 18 Si 1.86801 * 119.99746 * 179.72062 * 16 14 11 19 19 H 1.48504 * 109.47209 * 89.99886 * 18 16 14 20 20 H 1.48501 * 109.47358 * 209.99377 * 18 16 14 21 21 H 1.48496 * 109.47341 * 329.99989 * 18 16 14 22 22 N 1.46509 * 109.46928 * 119.99941 * 2 1 3 23 23 C 1.45748 * 117.94553 * 239.99538 * 22 2 1 24 24 C 1.52923 * 110.48715 * 160.92397 * 23 22 2 25 25 C 1.53344 * 108.67308 * 50.75708 * 24 23 22 26 26 C 1.53076 * 108.42378 * 292.46982 * 25 24 23 27 27 C 1.33350 * 117.94218 * 59.73596 * 22 2 1 28 28 O 1.21275 * 118.25330 * 2.22463 * 27 22 2 29 29 H 1.09003 * 109.46951 * 59.99863 * 1 2 3 30 30 H 1.08993 * 109.47462 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47116 * 300.00541 * 1 2 3 32 32 H 1.09001 * 109.46663 * 65.00539 * 4 2 1 33 33 H 1.09000 * 109.47390 * 305.00573 * 4 2 1 34 34 H 0.96998 * 120.00771 * 345.00565 * 5 4 2 35 35 H 1.09002 * 109.47497 * 270.00582 * 10 9 6 36 36 H 1.09004 * 109.46702 * 30.00025 * 10 9 6 37 37 H 1.08998 * 109.47259 * 149.99604 * 10 9 6 38 38 H 1.08998 * 109.47156 * 60.00179 * 13 11 9 39 39 H 1.09004 * 109.46783 * 180.02562 * 13 11 9 40 40 H 1.09005 * 109.46870 * 300.00240 * 13 11 9 41 41 H 0.96995 * 120.00207 * 179.97438 * 17 16 14 42 42 H 1.09000 * 109.30541 * 281.24341 * 23 22 2 43 43 H 1.09010 * 109.29889 * 40.61420 * 23 22 2 44 44 H 1.08996 * 109.60090 * 170.51287 * 24 23 22 45 45 H 1.09000 * 109.60024 * 290.99883 * 24 23 22 46 46 H 1.08996 * 109.67418 * 52.20114 * 25 24 23 47 47 H 1.08990 * 109.67483 * 172.73619 * 25 24 23 48 48 H 1.08991 * 109.40263 * 169.02859 * 26 25 24 49 49 H 1.09000 * 109.39712 * 288.85572 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 7 3.5000 -0.8265 -1.1905 6 16 4.2963 -1.8691 -2.2011 7 8 3.6198 -3.1151 -2.1062 8 8 5.6819 -1.7142 -1.9266 9 7 4.0627 -1.3267 -3.7481 10 6 2.9125 -1.7978 -4.5237 11 6 5.0060 -0.3756 -4.3413 12 1 5.7892 -0.1430 -3.6198 13 6 5.6322 -0.9923 -5.5937 14 6 4.2763 0.8889 -4.7150 15 1 3.2158 0.9753 -4.5296 16 6 4.9614 1.9330 -5.2993 17 7 6.2527 1.8277 -5.5254 18 14 4.0554 3.4974 -5.7697 19 1 4.0807 4.4465 -4.6278 20 1 4.7178 4.1189 -6.9446 21 1 2.6475 3.1707 -6.1106 22 7 2.0183 -0.6906 1.1963 23 6 2.8530 0.0603 2.1256 24 6 2.8767 -0.6212 3.4943 25 6 3.2230 -2.1023 3.2994 26 6 2.0606 -2.7788 2.5683 27 6 1.6668 -1.9653 1.3691 28 8 0.9972 -2.4978 0.5095 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.7516 -0.1584 -2.1369 33 1 1.6053 -1.7199 -1.2951 34 1 4.0003 -0.2855 -0.5597 35 1 3.1895 -2.6964 -5.0750 36 1 2.0878 -2.0257 -3.8484 37 1 2.6044 -1.0220 -5.2245 38 1 4.8487 -1.2246 -6.3149 39 1 6.3344 -0.2848 -6.0347 40 1 6.1600 -1.9069 -5.3232 41 1 6.7345 2.5621 -5.9367 42 1 3.8684 0.1164 1.7333 43 1 2.4551 1.0695 2.2325 44 1 3.6303 -0.1494 4.1247 45 1 1.8968 -0.5334 3.9636 46 1 4.1321 -2.1914 2.7047 47 1 3.3711 -2.5754 4.2701 48 1 2.3647 -3.7755 2.2489 49 1 1.2072 -2.8590 3.2416 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330426097.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:39:44 Heat of formation + Delta-G solvation = -112.521177 kcal Electronic energy + Delta-G solvation = -31376.577779 eV Core-core repulsion = 27272.462571 eV Total energy + Delta-G solvation = -4104.115208 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.83580 -36.64086 -36.56105 -36.23959 -36.03642 -35.15057 -33.32752 -32.58234 -30.80307 -29.65485 -29.04652 -25.67171 -25.37118 -25.16749 -24.59673 -23.36536 -21.22309 -20.72597 -18.88099 -18.45780 -17.20289 -16.95405 -16.85136 -16.38145 -16.21947 -15.82026 -15.36119 -14.89688 -14.56582 -14.40804 -14.28998 -14.12332 -13.47779 -13.42775 -13.20768 -13.09373 -12.83020 -12.73114 -12.34467 -12.18594 -11.93436 -11.91032 -11.72539 -11.65693 -11.41979 -11.33240 -11.28972 -11.24484 -11.17987 -11.11271 -10.95713 -10.89383 -10.80463 -10.39728 -10.19323 -10.05934 -9.57473 -9.27429 -8.91151 -8.73086 -8.47961 -7.92013 -6.09198 -4.17580 1.35522 2.66573 2.88201 3.22926 3.30787 3.32476 3.60482 4.23222 4.34841 4.36764 4.44985 4.47798 4.57261 4.81832 4.99411 5.09329 5.13956 5.20988 5.21274 5.23602 5.29965 5.46404 5.50339 5.60399 5.63759 5.67304 5.67955 5.73463 5.81002 5.90987 5.99276 6.17130 6.23553 6.27647 6.42458 6.53642 6.70389 6.90679 6.91237 7.14255 7.30635 7.45532 7.57524 7.65254 7.80056 8.06780 8.20876 8.27365 8.85424 9.48431 10.95787 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.013805 B = 0.003883 C = 0.003558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2027.724061 B = 7209.335610 C = 7868.328563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.138 3.862 3 H 0.093 0.907 4 C 0.104 3.896 5 N -1.123 6.123 6 S 2.782 3.218 7 O -0.993 6.993 8 O -0.987 6.987 9 N -0.990 5.990 10 C 0.106 3.894 11 C 0.268 3.732 12 H 0.057 0.943 13 C -0.145 4.145 14 C -0.524 4.524 15 H 0.063 0.937 16 C 0.064 3.936 17 N -0.887 5.887 18 Si 0.897 3.103 19 H -0.281 1.281 20 H -0.286 1.286 21 H -0.274 1.274 22 N -0.598 5.598 23 C 0.109 3.891 24 C -0.134 4.134 25 C -0.127 4.127 26 C -0.136 4.136 27 C 0.516 3.484 28 O -0.538 6.538 29 H 0.068 0.932 30 H 0.083 0.917 31 H 0.054 0.946 32 H 0.071 0.929 33 H 0.101 0.899 34 H 0.406 0.594 35 H 0.042 0.958 36 H 0.050 0.950 37 H 0.079 0.921 38 H 0.032 0.968 39 H 0.092 0.908 40 H 0.012 0.988 41 H 0.263 0.737 42 H 0.067 0.933 43 H 0.076 0.924 44 H 0.084 0.916 45 H 0.071 0.929 46 H 0.073 0.927 47 H 0.075 0.925 48 H 0.100 0.900 49 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.923 -2.280 16.709 19.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.033 3.967 3 H 0.111 0.889 4 C -0.023 4.023 5 N -0.882 5.882 6 S 2.791 3.209 7 O -0.977 6.977 8 O -0.971 6.971 9 N -0.833 5.833 10 C -0.041 4.041 11 C 0.165 3.835 12 H 0.075 0.925 13 C -0.204 4.204 14 C -0.563 4.563 15 H 0.081 0.919 16 C -0.139 4.139 17 N -0.525 5.525 18 Si 0.725 3.275 19 H -0.208 1.208 20 H -0.212 1.212 21 H -0.199 1.199 22 N -0.332 5.332 23 C -0.014 4.014 24 C -0.172 4.172 25 C -0.164 4.164 26 C -0.176 4.176 27 C 0.305 3.695 28 O -0.416 6.416 29 H 0.087 0.913 30 H 0.102 0.898 31 H 0.073 0.927 32 H 0.089 0.911 33 H 0.119 0.881 34 H 0.238 0.762 35 H 0.061 0.939 36 H 0.068 0.932 37 H 0.097 0.903 38 H 0.051 0.949 39 H 0.111 0.889 40 H 0.031 0.969 41 H 0.073 0.927 42 H 0.086 0.914 43 H 0.095 0.905 44 H 0.102 0.898 45 H 0.090 0.910 46 H 0.092 0.908 47 H 0.094 0.906 48 H 0.118 0.882 49 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -8.720 -3.369 16.325 18.812 hybrid contribution -0.323 1.720 -0.130 1.755 sum -9.043 -1.649 16.194 18.621 Atomic orbital electron populations 1.22155 0.93987 1.04541 1.01955 1.21319 0.95097 0.96072 0.84176 0.88911 1.21736 0.79736 1.03598 0.97264 1.55894 1.15116 1.62331 1.54819 1.01801 0.72748 0.73435 0.72946 1.93563 1.76300 1.41190 1.86601 1.93578 1.31712 1.86885 1.84903 1.57703 1.36085 1.59941 1.29580 1.21204 0.86983 0.99289 0.96598 1.18704 0.86867 0.85330 0.92587 0.92493 1.22052 1.00510 0.98589 0.99294 1.21381 0.95594 0.98619 1.40733 0.91925 1.24926 0.94875 0.98573 0.95508 1.69883 1.07267 1.32258 1.43125 0.86533 0.79780 0.83187 0.78045 1.20755 1.21227 1.19929 1.47348 1.51067 1.11546 1.23190 1.21491 0.95218 0.95442 0.89237 1.21868 1.02949 0.96076 0.96284 1.21680 0.98377 0.95190 1.01181 1.21680 1.00013 1.00179 0.95707 1.20057 0.79833 0.81450 0.88169 1.90658 1.39213 1.69090 1.42646 0.91322 0.89785 0.92671 0.91073 0.88065 0.76158 0.93944 0.93161 0.90251 0.94870 0.88932 0.96939 0.92681 0.91444 0.90532 0.89755 0.91029 0.90849 0.90598 0.88162 0.88636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.82 9.08 37.16 0.34 -1.48 16 2 C 0.14 1.62 2.73 -67.93 -0.19 1.44 16 3 H 0.09 0.94 7.79 -51.93 -0.40 0.54 16 4 C 0.10 1.56 5.42 -4.04 -0.02 1.54 16 5 N -1.12 -18.61 5.80 -10.61 -0.06 -18.67 16 6 S 2.78 57.39 6.09 -107.50 -0.66 56.73 16 7 O -0.99 -22.05 16.68 -57.17 -0.95 -23.01 16 8 O -0.99 -23.19 16.70 -57.17 -0.95 -24.14 16 9 N -0.99 -21.20 3.12 -115.84 -0.36 -21.56 16 10 C 0.11 1.98 9.28 59.85 0.56 2.54 16 11 C 0.27 6.63 2.63 -69.08 -0.18 6.45 16 12 H 0.06 1.56 6.91 -51.93 -0.36 1.20 16 13 C -0.14 -3.52 8.97 37.16 0.33 -3.19 16 14 C -0.52 -13.38 7.99 -34.44 -0.28 -13.65 16 15 H 0.06 1.55 7.33 -52.49 -0.38 1.16 16 16 C 0.06 1.67 5.30 -17.82 -0.09 1.57 16 17 N -0.89 -24.33 11.31 55.43 0.63 -23.70 16 18 Si 0.90 20.19 29.54 -169.99 -5.02 15.17 16 19 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 20 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 21 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 22 N -0.60 -6.60 2.45 -167.38 -0.41 -7.01 16 23 C 0.11 0.87 6.25 -4.49 -0.03 0.84 16 24 C -0.13 -0.83 6.02 -26.59 -0.16 -0.99 16 25 C -0.13 -0.93 6.04 -26.51 -0.16 -1.09 16 26 C -0.14 -1.30 6.03 -28.10 -0.17 -1.47 16 27 C 0.52 6.68 6.88 -11.88 -0.08 6.60 16 28 O -0.54 -8.92 12.52 5.56 0.07 -8.85 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.08 1.09 5.98 -51.93 -0.31 0.78 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.10 1.74 5.62 -51.93 -0.29 1.45 16 34 H 0.41 5.99 8.32 -34.47 -0.29 5.70 16 35 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.05 0.84 7.79 -51.93 -0.40 0.44 16 37 H 0.08 1.48 7.02 -51.93 -0.36 1.12 16 38 H 0.03 0.75 7.67 -51.93 -0.40 0.35 16 39 H 0.09 2.43 6.06 -51.93 -0.31 2.11 16 40 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 41 H 0.26 6.88 8.31 -40.82 -0.34 6.55 16 42 H 0.07 0.55 7.88 -51.93 -0.41 0.14 16 43 H 0.08 0.49 8.03 -51.92 -0.42 0.07 16 44 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.07 0.41 8.12 -51.93 -0.42 -0.01 16 46 H 0.07 0.62 8.13 -51.93 -0.42 0.20 16 47 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 48 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 49 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 392.39 15.07 5.91 5.91 Total: -1.00 -33.76 392.39 -10.07 -43.83 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: -8.13 Total: 6.20 kcal Atomic # 6 Polarization: -0.77 SS G_CDS: -0.13 Total: -0.90 kcal Atomic # 7 Polarization: -70.74 SS G_CDS: -0.21 Total: -70.94 kcal Atomic # 8 Polarization: -54.16 SS G_CDS: -1.84 Total: -56.00 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Atomic # 16 Polarization: 57.39 SS G_CDS: -0.66 Total: 56.73 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -33.76 -10.07 -43.83 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330426097.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.689 kcal (2) G-P(sol) polarization free energy of solvation -33.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds