Wall clock time and date at job start Wed Apr 1 2020 05:39:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08993 * 109.47462 * 2 1 4 4 C 1.53004 * 109.47106 * 239.99432 * 2 1 3 5 5 N 1.46497 * 109.46901 * 185.00015 * 4 2 1 6 6 S 1.65608 * 119.99590 * 165.00529 * 5 4 2 7 7 O 1.42105 * 106.39936 * 311.45624 * 6 5 4 8 8 O 1.42103 * 106.39990 * 178.54185 * 6 5 4 9 9 N 1.65591 * 107.21947 * 65.00148 * 6 5 4 10 10 C 1.46506 * 120.00063 * 269.99815 * 9 6 5 11 11 C 1.46499 * 120.00485 * 90.00027 * 9 6 5 12 12 H 1.09007 * 109.46342 * 359.97438 * 11 9 6 13 13 C 1.52998 * 109.47185 * 119.99872 * 11 9 6 14 14 C 1.50701 * 109.47260 * 240.00359 * 11 9 6 15 15 H 1.08002 * 119.99761 * 359.97438 * 14 11 9 16 16 C 1.37871 * 119.99694 * 180.27562 * 14 11 9 17 17 N 1.31514 * 120.00482 * 359.71466 * 16 14 11 18 18 Si 1.86801 * 119.99746 * 179.72062 * 16 14 11 19 19 H 1.48504 * 109.47209 * 89.99886 * 18 16 14 20 20 H 1.48501 * 109.47358 * 209.99377 * 18 16 14 21 21 H 1.48496 * 109.47341 * 329.99989 * 18 16 14 22 22 N 1.46509 * 109.46928 * 119.99941 * 2 1 3 23 23 C 1.45748 * 117.94553 * 239.99538 * 22 2 1 24 24 C 1.52923 * 110.48715 * 160.92397 * 23 22 2 25 25 C 1.53344 * 108.67308 * 50.75708 * 24 23 22 26 26 C 1.53076 * 108.42378 * 292.46982 * 25 24 23 27 27 C 1.33350 * 117.94218 * 59.73596 * 22 2 1 28 28 O 1.21275 * 118.25330 * 2.22463 * 27 22 2 29 29 H 1.09003 * 109.46951 * 59.99863 * 1 2 3 30 30 H 1.08993 * 109.47462 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47116 * 300.00541 * 1 2 3 32 32 H 1.09001 * 109.46663 * 65.00539 * 4 2 1 33 33 H 1.09000 * 109.47390 * 305.00573 * 4 2 1 34 34 H 0.96998 * 120.00771 * 345.00565 * 5 4 2 35 35 H 1.09002 * 109.47497 * 270.00582 * 10 9 6 36 36 H 1.09004 * 109.46702 * 30.00025 * 10 9 6 37 37 H 1.08998 * 109.47259 * 149.99604 * 10 9 6 38 38 H 1.08998 * 109.47156 * 60.00179 * 13 11 9 39 39 H 1.09004 * 109.46783 * 180.02562 * 13 11 9 40 40 H 1.09005 * 109.46870 * 300.00240 * 13 11 9 41 41 H 0.96995 * 120.00207 * 179.97438 * 17 16 14 42 42 H 1.09000 * 109.30541 * 281.24341 * 23 22 2 43 43 H 1.09010 * 109.29889 * 40.61420 * 23 22 2 44 44 H 1.08996 * 109.60090 * 170.51287 * 24 23 22 45 45 H 1.09000 * 109.60024 * 290.99883 * 24 23 22 46 46 H 1.08996 * 109.67418 * 52.20114 * 25 24 23 47 47 H 1.08990 * 109.67483 * 172.73619 * 25 24 23 48 48 H 1.08991 * 109.40263 * 169.02859 * 26 25 24 49 49 H 1.09000 * 109.39712 * 288.85572 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 7 3.5000 -0.8265 -1.1905 6 16 4.2963 -1.8691 -2.2011 7 8 3.6198 -3.1151 -2.1062 8 8 5.6819 -1.7142 -1.9266 9 7 4.0627 -1.3267 -3.7481 10 6 2.9125 -1.7978 -4.5237 11 6 5.0060 -0.3756 -4.3413 12 1 5.7892 -0.1430 -3.6198 13 6 5.6322 -0.9923 -5.5937 14 6 4.2763 0.8889 -4.7150 15 1 3.2158 0.9753 -4.5296 16 6 4.9614 1.9330 -5.2993 17 7 6.2527 1.8277 -5.5254 18 14 4.0554 3.4974 -5.7697 19 1 4.0807 4.4465 -4.6278 20 1 4.7178 4.1189 -6.9446 21 1 2.6475 3.1707 -6.1106 22 7 2.0183 -0.6906 1.1963 23 6 2.8530 0.0603 2.1256 24 6 2.8767 -0.6212 3.4943 25 6 3.2230 -2.1023 3.2994 26 6 2.0606 -2.7788 2.5683 27 6 1.6668 -1.9653 1.3691 28 8 0.9972 -2.4978 0.5095 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.7516 -0.1584 -2.1369 33 1 1.6053 -1.7199 -1.2951 34 1 4.0003 -0.2855 -0.5597 35 1 3.1895 -2.6964 -5.0750 36 1 2.0878 -2.0257 -3.8484 37 1 2.6044 -1.0220 -5.2245 38 1 4.8487 -1.2246 -6.3149 39 1 6.3344 -0.2848 -6.0347 40 1 6.1600 -1.9069 -5.3232 41 1 6.7345 2.5621 -5.9367 42 1 3.8684 0.1164 1.7333 43 1 2.4551 1.0695 2.2325 44 1 3.6303 -0.1494 4.1247 45 1 1.8968 -0.5334 3.9636 46 1 4.1321 -2.1914 2.7047 47 1 3.3711 -2.5754 4.2701 48 1 2.3647 -3.7755 2.2489 49 1 1.2072 -2.8590 3.2416 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330426097.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:39:43 Heat of formation + Delta-G solvation = -136.739824 kcal Electronic energy + Delta-G solvation = -31377.627978 eV Core-core repulsion = 27272.462571 eV Total energy + Delta-G solvation = -4105.165407 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.73659 -38.36877 -37.92009 -37.52405 -37.14013 -36.92982 -34.51508 -34.42427 -31.67203 -30.93756 -30.39831 -27.27465 -27.05623 -26.65307 -25.30499 -24.23034 -22.63615 -22.01144 -20.38091 -19.45200 -18.76519 -18.41572 -18.25518 -17.88231 -17.58668 -17.00299 -16.64189 -16.37648 -15.78363 -15.39596 -15.17887 -15.11212 -14.97848 -14.84660 -14.51864 -14.20942 -14.11410 -13.95119 -13.75059 -13.53409 -13.43540 -13.23625 -13.16975 -12.98840 -12.97847 -12.80865 -12.75215 -12.70357 -12.46725 -12.40895 -12.18163 -12.13207 -11.90658 -11.83145 -11.77660 -11.68342 -11.21238 -10.66302 -10.48198 -10.14877 -9.71329 -9.60887 -8.07494 -6.22724 -0.30645 1.47032 1.49294 1.58450 1.71380 1.96690 2.09212 2.47374 2.60442 3.20870 3.40897 3.58236 3.84007 3.89054 3.93216 3.95597 4.04107 4.16359 4.30672 4.47875 4.51592 4.57827 4.61066 4.66477 4.69986 4.75862 4.79727 4.91798 4.92382 4.95831 4.95883 4.99170 5.05404 5.10425 5.13174 5.13420 5.22942 5.33986 5.37540 5.60135 5.63972 5.67458 5.83190 6.05282 6.17004 6.29258 6.58575 6.86202 7.27643 7.46955 8.97294 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.013805 B = 0.003883 C = 0.003558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2027.724061 B = 7209.335610 C = 7868.328563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.137 3.863 3 H 0.116 0.884 4 C 0.101 3.899 5 N -1.110 6.110 6 S 2.796 3.204 7 O -1.010 7.010 8 O -1.019 7.019 9 N -0.995 5.995 10 C 0.101 3.899 11 C 0.273 3.727 12 H 0.025 0.975 13 C -0.139 4.139 14 C -0.528 4.528 15 H 0.071 0.929 16 C 0.016 3.984 17 N -0.919 5.919 18 Si 0.962 3.038 19 H -0.276 1.276 20 H -0.290 1.290 21 H -0.264 1.264 22 N -0.594 5.594 23 C 0.098 3.902 24 C -0.127 4.127 25 C -0.124 4.124 26 C -0.136 4.136 27 C 0.503 3.497 28 O -0.584 6.584 29 H 0.077 0.923 30 H 0.059 0.941 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.416 0.584 35 H 0.049 0.951 36 H 0.068 0.932 37 H 0.081 0.919 38 H 0.043 0.957 39 H 0.072 0.928 40 H 0.016 0.984 41 H 0.263 0.737 42 H 0.064 0.936 43 H 0.100 0.900 44 H 0.106 0.894 45 H 0.082 0.918 46 H 0.057 0.943 47 H 0.098 0.902 48 H 0.087 0.913 49 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.349 -0.607 18.225 20.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.032 3.968 3 H 0.134 0.866 4 C -0.026 4.026 5 N -0.872 5.872 6 S 2.805 3.195 7 O -0.994 6.994 8 O -1.003 7.003 9 N -0.837 5.837 10 C -0.045 4.045 11 C 0.169 3.831 12 H 0.042 0.958 13 C -0.199 4.199 14 C -0.567 4.567 15 H 0.089 0.911 16 C -0.183 4.183 17 N -0.558 5.558 18 Si 0.787 3.213 19 H -0.202 1.202 20 H -0.216 1.216 21 H -0.189 1.189 22 N -0.327 5.327 23 C -0.024 4.024 24 C -0.164 4.164 25 C -0.162 4.162 26 C -0.175 4.175 27 C 0.293 3.707 28 O -0.465 6.465 29 H 0.096 0.904 30 H 0.078 0.922 31 H 0.092 0.908 32 H 0.094 0.906 33 H 0.097 0.903 34 H 0.251 0.749 35 H 0.068 0.932 36 H 0.086 0.914 37 H 0.100 0.900 38 H 0.062 0.938 39 H 0.090 0.910 40 H 0.035 0.965 41 H 0.072 0.928 42 H 0.082 0.918 43 H 0.118 0.882 44 H 0.124 0.876 45 H 0.100 0.900 46 H 0.076 0.924 47 H 0.117 0.883 48 H 0.105 0.895 49 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -10.140 -1.691 17.867 20.613 hybrid contribution 0.115 1.155 -0.569 1.293 sum -10.025 -0.536 17.298 20.000 Atomic orbital electron populations 1.22070 0.93104 1.03338 1.03308 1.21379 0.95768 0.96599 0.83033 0.86587 1.21861 0.78169 1.03007 0.99571 1.55511 1.15970 1.61793 1.53955 1.01192 0.71943 0.73434 0.72961 1.93540 1.76416 1.42555 1.86848 1.93527 1.34078 1.87360 1.85368 1.57588 1.36451 1.59460 1.30220 1.21371 0.86588 0.99556 0.96947 1.18418 0.86781 0.86100 0.91802 0.95768 1.21956 1.00411 0.98135 0.99423 1.21604 0.95943 0.98849 1.40345 0.91093 1.25703 0.95496 1.01617 0.95511 1.70023 1.08733 1.33155 1.43911 0.85508 0.78868 0.79367 0.77531 1.20178 1.21585 1.18877 1.47461 1.50690 1.11238 1.23279 1.21806 0.94605 0.96436 0.89545 1.21873 1.04267 0.94842 0.95463 1.21695 0.96553 0.96314 1.01625 1.21719 1.01701 0.99144 0.94972 1.20714 0.79269 0.82104 0.88617 1.90641 1.41332 1.70165 1.44378 0.90395 0.92224 0.90838 0.90598 0.90315 0.74939 0.93235 0.91384 0.90030 0.93763 0.90972 0.96531 0.92762 0.91759 0.88223 0.87558 0.89974 0.92438 0.88332 0.89474 0.86688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.20 9.08 71.98 0.65 -2.55 16 2 C 0.14 2.99 2.73 44.99 0.12 3.11 16 3 H 0.12 2.01 7.79 -2.39 -0.02 1.99 16 4 C 0.10 2.95 5.42 86.38 0.47 3.42 16 5 N -1.11 -36.43 5.80 -187.49 -1.09 -37.52 16 6 S 2.80 116.54 6.09 -56.49 -0.34 116.19 16 7 O -1.01 -45.40 16.68 -128.00 -2.14 -47.54 16 8 O -1.02 -48.96 16.70 -128.00 -2.14 -51.10 16 9 N -1.00 -42.57 3.12 -520.42 -1.62 -44.20 16 10 C 0.10 3.70 9.28 127.77 1.19 4.89 16 11 C 0.27 13.63 2.63 44.24 0.12 13.74 16 12 H 0.02 1.38 6.91 -2.38 -0.02 1.36 16 13 C -0.14 -6.86 8.97 71.98 0.65 -6.21 16 14 C -0.53 -26.65 7.99 25.60 0.20 -26.45 16 15 H 0.07 3.40 7.33 -2.91 -0.02 3.38 16 16 C 0.02 0.84 5.30 84.65 0.45 1.29 16 17 N -0.92 -50.73 11.31 21.45 0.24 -50.49 16 18 Si 0.96 40.62 29.54 68.60 2.03 42.65 16 19 H -0.28 -11.36 7.11 99.48 0.71 -10.66 16 20 H -0.29 -12.33 7.11 99.48 0.71 -11.63 16 21 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 22 N -0.59 -12.22 2.45 -802.64 -1.96 -14.18 16 23 C 0.10 1.30 6.25 86.50 0.54 1.84 16 24 C -0.13 -1.18 6.02 30.68 0.18 -0.99 16 25 C -0.12 -1.59 6.04 30.74 0.19 -1.40 16 26 C -0.14 -2.48 6.03 29.71 0.18 -2.30 16 27 C 0.50 12.81 6.88 87.71 0.60 13.41 16 28 O -0.58 -19.77 12.52 -3.02 -0.04 -19.81 16 29 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.06 1.53 5.98 -2.39 -0.01 1.52 16 31 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.08 2.75 5.62 -2.39 -0.01 2.73 16 34 H 0.42 12.00 8.32 -96.75 -0.80 11.19 16 35 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.07 2.23 7.79 -2.39 -0.02 2.21 16 37 H 0.08 2.95 7.02 -2.39 -0.02 2.93 16 38 H 0.04 2.01 7.67 -2.39 -0.02 1.99 16 39 H 0.07 3.85 6.06 -2.38 -0.01 3.84 16 40 H 0.02 0.74 8.14 -2.38 -0.02 0.73 16 41 H 0.26 13.85 8.31 -92.71 -0.77 13.08 16 42 H 0.06 0.91 7.88 -2.39 -0.02 0.89 16 43 H 0.10 0.90 8.03 -2.38 -0.02 0.88 16 44 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 45 H 0.08 0.64 8.12 -2.39 -0.02 0.62 16 46 H 0.06 0.92 8.13 -2.39 -0.02 0.90 16 47 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 48 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 49 H 0.12 1.61 8.14 -2.39 -0.02 1.59 16 Total: -1.00 -73.70 392.39 -1.38 -75.08 By element: Atomic # 1 Polarization: 28.97 SS G_CDS: 0.14 Total: 29.11 kcal Atomic # 6 Polarization: -3.73 SS G_CDS: 5.54 Total: 1.81 kcal Atomic # 7 Polarization: -141.96 SS G_CDS: -4.43 Total: -146.39 kcal Atomic # 8 Polarization: -114.14 SS G_CDS: -4.31 Total: -118.45 kcal Atomic # 14 Polarization: 40.62 SS G_CDS: 2.03 Total: 42.65 kcal Atomic # 16 Polarization: 116.54 SS G_CDS: -0.34 Total: 116.19 kcal Total: -73.70 -1.38 -75.08 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330426097.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.657 kcal (2) G-P(sol) polarization free energy of solvation -73.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds