Wall clock time and date at job start Wed Apr 1 2020 04:09:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46907 * 2 1 4 4 N 1.46497 * 109.47167 * 180.02562 * 3 2 1 5 5 C 1.46501 * 119.99635 * 274.99591 * 4 3 2 6 6 C 1.53001 * 109.47328 * 279.86997 * 5 4 3 7 7 C 1.53006 * 109.47254 * 184.45861 * 6 5 4 8 8 S 1.65592 * 120.00497 * 94.99739 * 4 3 2 9 9 O 1.42096 * 106.40171 * 328.55721 * 8 4 3 10 10 O 1.42104 * 106.40477 * 195.64228 * 8 4 3 11 11 N 1.65602 * 107.22158 * 82.09950 * 8 4 3 12 12 C 1.46957 * 120.59522 * 95.47489 * 11 8 4 13 13 C 1.53371 * 108.63847 * 235.20686 * 12 11 8 14 14 N 1.46963 * 108.63566 * 310.57935 * 13 12 11 15 15 C 1.34770 * 120.59752 * 235.20419 * 14 13 12 16 16 O 1.21691 * 119.99681 * 5.14014 * 15 14 13 17 17 C 1.46372 * 120.00425 * 185.13997 * 15 14 13 18 18 H 1.07995 * 119.99837 * 354.93975 * 17 15 14 19 19 C 1.40048 * 120.00234 * 174.93579 * 17 15 14 20 20 N 1.30680 * 119.99851 * 0.02562 * 19 17 15 21 21 Si 1.86797 * 120.00358 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47362 * 270.00130 * 21 19 17 23 23 H 1.48504 * 109.46659 * 29.99994 * 21 19 17 24 24 H 1.48497 * 109.47409 * 149.99445 * 21 19 17 25 25 C 1.46969 * 118.81243 * 55.47087 * 14 13 12 26 26 C 1.46959 * 120.58907 * 275.45927 * 11 8 4 27 27 H 1.09004 * 109.47454 * 299.99798 * 1 2 3 28 28 H 1.08993 * 109.47542 * 60.00231 * 1 2 3 29 29 H 1.09005 * 109.46898 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.46900 * 240.00134 * 2 1 3 31 31 H 1.08998 * 109.47226 * 119.99443 * 2 1 3 32 32 H 1.08998 * 109.47536 * 59.99641 * 3 2 1 33 33 H 1.09004 * 109.47151 * 299.99842 * 3 2 1 34 34 H 1.09005 * 109.46863 * 39.87052 * 5 4 3 35 35 H 1.09003 * 109.47475 * 159.86576 * 5 4 3 36 36 H 1.08990 * 109.47001 * 304.46097 * 6 5 4 37 37 H 1.09005 * 109.47146 * 64.46403 * 6 5 4 38 38 H 1.08993 * 109.47062 * 180.02562 * 7 6 5 39 39 H 1.08998 * 109.47239 * 300.00390 * 7 6 5 40 40 H 1.09005 * 109.46602 * 60.00209 * 7 6 5 41 41 H 1.09000 * 109.60849 * 115.46395 * 12 11 8 42 42 H 1.09005 * 109.75518 * 355.03744 * 12 11 8 43 43 H 1.08995 * 109.61335 * 190.82798 * 13 12 11 44 44 H 1.09004 * 109.60809 * 70.31865 * 13 12 11 45 45 H 0.96998 * 119.99471 * 179.97438 * 20 19 17 46 46 H 1.09003 * 109.60822 * 64.26883 * 25 14 13 47 47 H 1.08998 * 109.61352 * 184.77798 * 25 14 13 48 48 H 1.09005 * 109.60976 * 244.53617 * 26 11 8 49 49 H 1.08995 * 109.61693 * 5.04363 * 26 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4426 -0.0006 5 6 4.2379 1.3319 1.2630 6 6 4.2790 2.6983 1.9502 7 6 5.1379 2.6085 3.2132 8 16 4.3324 1.5677 -1.4295 9 8 3.5256 0.9404 -2.4167 10 8 5.6700 1.1747 -1.1544 11 7 4.3891 3.1751 -1.8241 12 6 5.5569 3.9923 -1.4664 13 6 5.0785 5.2014 -0.6530 14 7 3.9619 5.8359 -1.3674 15 6 4.0079 7.1440 -1.6886 16 8 5.0168 7.7887 -1.4712 17 6 2.8444 7.7892 -2.2989 18 1 1.9794 7.2008 -2.5669 19 6 2.8529 9.1696 -2.5352 20 7 3.8997 9.8815 -2.2113 21 14 1.3678 9.9931 -3.3133 22 1 1.5177 9.9904 -4.7907 23 1 0.1374 9.2504 -2.9393 24 1 1.2674 11.3931 -2.8285 25 6 2.7916 5.0199 -1.7202 26 6 3.2725 3.8095 -2.5385 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5137 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5137 0.8900 32 1 1.6766 1.9564 0.8899 33 1 1.6766 1.9563 -0.8900 34 1 3.7367 0.6137 1.9120 35 1 5.2551 0.9942 1.0647 36 1 4.7084 3.4341 1.2703 37 1 3.2668 3.0000 2.2199 38 1 5.1667 3.5817 3.7029 39 1 4.7084 1.8726 3.8931 40 1 6.1500 2.3068 2.9435 41 1 6.0548 4.3355 -2.3733 42 1 6.2513 3.4013 -0.8692 43 1 5.8952 5.9147 -0.5432 44 1 4.7432 4.8712 0.3302 45 1 3.9057 10.8375 -2.3753 46 1 2.2972 4.6771 -0.8112 47 1 2.0977 5.6135 -2.3153 48 1 3.6077 4.1397 -3.5218 49 1 2.4558 3.0962 -2.6483 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331148003.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:09:21 Heat of formation + Delta-G solvation = -136.862916 kcal Electronic energy + Delta-G solvation = -31260.750412 eV Core-core repulsion = 27155.579667 eV Total energy + Delta-G solvation = -4105.170745 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.25140 -38.55976 -38.47711 -37.89677 -37.02164 -34.98453 -34.73068 -34.29172 -32.75368 -32.32349 -28.86569 -27.79610 -27.30683 -25.71658 -24.76570 -23.25212 -22.79812 -22.02745 -21.05342 -19.88515 -19.11967 -18.73335 -17.99171 -17.57946 -17.44546 -16.48954 -16.21235 -16.00129 -15.90434 -15.63878 -15.55211 -15.32327 -15.17572 -14.94341 -14.44317 -14.24960 -13.82015 -13.76644 -13.63390 -13.47214 -13.38359 -13.21089 -13.11776 -12.99971 -12.97962 -12.75710 -12.72648 -12.62569 -12.40186 -12.33178 -12.21612 -12.03728 -11.98824 -11.93975 -11.82461 -11.57034 -11.31573 -10.91686 -10.46467 -10.00301 -9.75344 -8.97170 -8.26572 -6.80381 -0.54396 1.42939 1.43496 1.58336 1.72707 2.25334 2.36673 2.49462 2.85386 3.16863 3.54232 3.61679 3.75824 3.99121 4.06503 4.08375 4.17371 4.24038 4.25267 4.33058 4.36033 4.41004 4.49050 4.51385 4.65354 4.70117 4.75029 4.78301 4.84171 4.87727 4.89911 4.98664 5.02262 5.07339 5.18504 5.23735 5.24695 5.32399 5.36804 5.41636 5.43171 5.51193 5.52488 5.75237 5.77415 6.16047 6.40997 6.91531 7.44374 8.49762 8.70050 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.012990 B = 0.003592 C = 0.003355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2154.971055 B = 7792.977990 C = 8343.036039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.143 4.143 3 C 0.119 3.881 4 N -0.998 5.998 5 C 0.115 3.885 6 C -0.148 4.148 7 C -0.149 4.149 8 S 2.794 3.206 9 O -0.995 6.995 10 O -1.001 7.001 11 N -1.001 6.001 12 C 0.118 3.882 13 C 0.107 3.893 14 N -0.639 5.639 15 C 0.542 3.458 16 O -0.632 6.632 17 C -0.566 4.566 18 H 0.098 0.902 19 C 0.030 3.970 20 N -0.823 5.823 21 Si 0.992 3.008 22 H -0.265 1.265 23 H -0.244 1.244 24 H -0.278 1.278 25 C 0.109 3.891 26 C 0.110 3.890 27 H 0.067 0.933 28 H 0.055 0.945 29 H 0.060 0.940 30 H 0.050 0.950 31 H 0.074 0.926 32 H 0.100 0.900 33 H 0.077 0.923 34 H 0.104 0.896 35 H 0.083 0.917 36 H 0.052 0.948 37 H 0.073 0.927 38 H 0.053 0.947 39 H 0.070 0.930 40 H 0.055 0.945 41 H 0.059 0.941 42 H 0.108 0.892 43 H 0.063 0.937 44 H 0.074 0.926 45 H 0.272 0.728 46 H 0.073 0.927 47 H 0.098 0.902 48 H 0.065 0.935 49 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.397 -19.059 7.792 21.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.183 4.183 3 C -0.006 4.006 4 N -0.838 5.838 5 C -0.010 4.010 6 C -0.187 4.187 7 C -0.207 4.207 8 S 2.804 3.196 9 O -0.979 6.979 10 O -0.985 6.985 11 N -0.840 5.840 12 C -0.009 4.009 13 C -0.018 4.018 14 N -0.376 5.376 15 C 0.349 3.651 16 O -0.519 6.519 17 C -0.603 4.603 18 H 0.116 0.884 19 C -0.185 4.185 20 N -0.453 5.453 21 Si 0.812 3.188 22 H -0.190 1.190 23 H -0.166 1.166 24 H -0.203 1.203 25 C -0.016 4.016 26 C -0.017 4.017 27 H 0.086 0.914 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.069 0.931 31 H 0.093 0.907 32 H 0.118 0.882 33 H 0.095 0.905 34 H 0.122 0.878 35 H 0.102 0.898 36 H 0.071 0.929 37 H 0.092 0.908 38 H 0.072 0.928 39 H 0.089 0.911 40 H 0.074 0.926 41 H 0.077 0.923 42 H 0.126 0.874 43 H 0.081 0.919 44 H 0.092 0.908 45 H 0.082 0.918 46 H 0.092 0.908 47 H 0.116 0.884 48 H 0.083 0.917 49 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -6.378 -19.295 7.408 21.630 hybrid contribution -0.147 1.097 -0.274 1.141 sum -6.525 -18.198 7.134 20.606 Atomic orbital electron populations 1.21691 0.93990 1.02410 1.02527 1.21954 0.97213 0.96729 1.02372 1.21544 0.77025 0.97769 1.04282 1.57810 1.15768 1.88054 1.22140 1.21586 0.97112 0.98193 0.84088 1.22066 1.01528 0.97244 0.97885 1.21687 0.99792 1.02288 0.96894 1.01545 0.72440 0.72457 0.73197 1.93568 1.70980 1.74125 1.59192 1.93532 1.37496 1.81792 1.85721 1.57935 1.26361 1.28638 1.71091 1.21697 0.86742 0.92498 0.99944 1.21664 0.91281 0.93805 0.95014 1.47902 1.18985 1.09212 1.61502 1.18657 0.88418 0.79882 0.78176 1.90552 1.35826 1.64423 1.61069 1.21505 1.01927 0.93742 1.43093 0.88415 1.26946 0.99674 0.98167 0.93685 1.70196 1.30565 1.07365 1.37193 0.85099 0.77859 0.77355 0.78526 1.19021 1.16646 1.20285 1.22073 0.88417 0.91570 0.99535 1.22001 0.88464 0.95815 0.95372 0.91400 0.92609 0.92093 0.93104 0.90699 0.88177 0.90505 0.87832 0.89837 0.92944 0.90834 0.92773 0.91096 0.92595 0.92303 0.87417 0.91870 0.90820 0.91789 0.90849 0.88446 0.91658 0.86875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 9.91 71.98 0.71 -1.08 16 2 C -0.14 -2.15 6.26 30.59 0.19 -1.96 16 3 C 0.12 1.87 5.32 86.38 0.46 2.33 16 4 N -1.00 -19.40 2.85 -515.78 -1.47 -20.88 16 5 C 0.12 1.90 5.70 86.38 0.49 2.39 16 6 C -0.15 -2.53 6.21 30.60 0.19 -2.34 16 7 C -0.15 -2.22 9.91 71.98 0.71 -1.51 16 8 S 2.79 74.53 6.01 -56.49 -0.34 74.19 16 9 O -0.99 -30.28 16.06 -128.00 -2.06 -32.34 16 10 O -1.00 -31.16 15.07 -128.00 -1.93 -33.09 16 11 N -1.00 -28.15 3.32 -511.46 -1.70 -29.85 16 12 C 0.12 3.67 6.57 86.42 0.57 4.24 16 13 C 0.11 3.92 6.59 86.42 0.57 4.49 16 14 N -0.64 -27.04 2.94 -822.24 -2.42 -29.46 16 15 C 0.54 30.08 7.62 86.36 0.66 30.74 16 16 O -0.63 -41.14 14.45 -4.32 -0.06 -41.21 16 17 C -0.57 -30.25 8.87 24.83 0.22 -30.03 16 18 H 0.10 4.54 5.66 -2.91 -0.02 4.53 16 19 C 0.03 1.63 5.50 85.30 0.47 2.10 16 20 N -0.82 -49.33 11.84 21.84 0.26 -49.08 16 21 Si 0.99 39.32 29.56 68.60 2.03 41.35 16 22 H -0.27 -10.17 7.11 99.48 0.71 -9.47 16 23 H -0.24 -8.74 7.11 99.48 0.71 -8.03 16 24 H -0.28 -10.82 7.11 99.48 0.71 -10.11 16 25 C 0.11 3.47 6.51 86.56 0.56 4.03 16 26 C 0.11 3.04 6.54 86.57 0.57 3.61 16 27 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16 28 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 30 H 0.05 0.98 7.92 -2.39 -0.02 0.96 16 31 H 0.07 0.96 8.11 -2.39 -0.02 0.94 16 32 H 0.10 1.20 7.81 -2.39 -0.02 1.19 16 33 H 0.08 1.24 7.20 -2.39 -0.02 1.22 16 34 H 0.10 1.20 8.10 -2.38 -0.02 1.18 16 35 H 0.08 1.56 6.77 -2.39 -0.02 1.55 16 36 H 0.05 1.11 5.56 -2.39 -0.01 1.10 16 37 H 0.07 1.16 7.84 -2.38 -0.02 1.14 16 38 H 0.05 0.86 8.14 -2.39 -0.02 0.85 16 39 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16 41 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 42 H 0.11 2.95 6.96 -2.38 -0.02 2.93 16 43 H 0.06 2.72 6.99 -2.39 -0.02 2.70 16 44 H 0.07 2.33 5.58 -2.38 -0.01 2.32 16 45 H 0.27 14.87 8.29 -92.71 -0.77 14.11 16 46 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 47 H 0.10 3.24 5.34 -2.39 -0.01 3.23 16 48 H 0.06 1.97 8.14 -2.38 -0.02 1.95 16 49 H 0.11 2.50 6.63 -2.39 -0.02 2.48 16 Total: -1.00 -78.68 392.95 -0.37 -79.05 By element: Atomic # 1 Polarization: 23.36 SS G_CDS: 0.94 Total: 24.30 kcal Atomic # 6 Polarization: 10.62 SS G_CDS: 6.37 Total: 17.00 kcal Atomic # 7 Polarization: -123.93 SS G_CDS: -5.33 Total: -129.26 kcal Atomic # 8 Polarization: -102.58 SS G_CDS: -4.05 Total: -106.63 kcal Atomic # 14 Polarization: 39.32 SS G_CDS: 2.03 Total: 41.35 kcal Atomic # 16 Polarization: 74.53 SS G_CDS: -0.34 Total: 74.19 kcal Total: -78.68 -0.37 -79.05 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331148003.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.809 kcal (2) G-P(sol) polarization free energy of solvation -78.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds